FC869137 | Citrus Genome Database

Overview


Name	FC869137
Unique Name	FC869137
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	671

Libraries


Library Name	Type
AbioticL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig9462	contig	Ccv1_Contig9462:1..671.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC869137 vs. ExPASy Swiss-Prot
Match: RCBT2_PONAB (RCC1 and BTB domain-containing protein 2 OS=Pongo abelii GN=RCBTB2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.508e-14
Identity = 46/150 (30.67%), Postives = 77/150 (51.33%), Query Frame = 3

Query:  126 RKVIAIAAGEA-HTLALTGDGRVFSWGRGMFGRLGNGSESDELFPVRVNFGDSEQLKFVGVAAGAYHSLALADDGSVWCWGYNSYGQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWG 572
            +K+  ++ G   H +  T +G VF+WG   + +LGNG+ +  L P  ++   S + + + VA G+YHSL L  DG V+ WGYN+ GQ+G SGS            T+  P          +K    + ++  G M  +A+ + G +++WG
Sbjct:   98 KKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK-QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVG-SGS------------TVNQPIPRRVTGCLQNKV---VVTIACGQMCCMAVVDTGEVYVWG 230

HSP 2 Score: 79.7221 bits (195), Expect = 1.508e-14
Identity = 52/156 (33.33%), Postives = 73/156 (46.79%), Query Frame = 3

Query:  111 SGNLPRK-VIAIAAGEAHTLALTGDGRVFSWGRGMFGRLGNGSESDELFPVRVNFGDSEQLKFVGVAAGAYHSLALADDGSVWCWGYNSYGQLGFSGS-NSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWG 572
            S NL  K VI +A G  H+L LT DG VF+WG    G++G+GS  ++  P RV  G  +    V +A G    +A+ D G V+ WGYN  GQLG   S N   PC +                       I++  V  G   +L + + G ++ WG
Sbjct:  146 STNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVT-GCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQPTPCRVAAL------------------QGIRVQRVACGYAHTLVLTDEGQVYAWG 282

HSP 3 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 53/169 (31.36%), Postives = 77/169 (45.56%), Query Frame = 3

Query:   84 MDSPASSPDSGNLPRKVIA-IAAGEAHTLALTGDGRVFSWGRGMFGRLGNGSESDELFPVRVNFGDSEQLKFVGVAAGAYHSLALADDGSVWCWGYNSYGQLGFSG-SNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKA--GGMMSLAIDNAGALWMWGNC 578
            ++ P     +G L  KV+  IA G+   +A+   G V+ WG    G+LG G+  ++  P RV     + ++   VA G  H+L L D+G V+ WG NSYGQLG    SN   P           P ++E D         +I  + A      S A    G ++MWG C
Sbjct:  190 VNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQPTPCRV--AALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYP----------TPVTVEKD---------RIIEIAACHSTHTSAAKTQGGHVYMWGQC 337

[Close]

BLAST of FC869137 vs. ExPASy Swiss-Prot
Match: RCBT2_HUMAN (RCC1 and BTB domain-containing protein 2 OS=Homo sapiens GN=RCBTB2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.508e-14
Identity = 46/150 (30.67%), Postives = 77/150 (51.33%), Query Frame = 3

Query:  126 RKVIAIAAGEA-HTLALTGDGRVFSWGRGMFGRLGNGSESDELFPVRVNFGDSEQLKFVGVAAGAYHSLALADDGSVWCWGYNSYGQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWG 572
            +K+  ++ G   H +  T +G VF+WG   + +LGNG+ +  L P  ++   S + + + VA G+YHSL L  DG V+ WGYN+ GQ+G SGS            T+  P          +K    + ++  G M  +A+ + G +++WG
Sbjct:   98 KKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNK-QVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVG-SGS------------TVNQPIPRRVTGCLQNKV---VVTIACGQMCCMAVVDTGEVYVWG 230

HSP 2 Score: 79.7221 bits (195), Expect = 1.508e-14
Identity = 52/156 (33.33%), Postives = 73/156 (46.79%), Query Frame = 3

Query:  111 SGNLPRK-VIAIAAGEAHTLALTGDGRVFSWGRGMFGRLGNGSESDELFPVRVNFGDSEQLKFVGVAAGAYHSLALADDGSVWCWGYNSYGQLGFSGS-NSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWG 572
            S NL  K VI +A G  H+L LT DG VF+WG    G++G+GS  ++  P RV  G  +    V +A G    +A+ D G V+ WGYN  GQLG   S N   PC +                       I++  V  G   +L + + G ++ WG
Sbjct:  146 STNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVT-GCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQPTPCRVAAL------------------QGIRVQRVACGYAHTLVLTDEGQVYAWG 282

HSP 3 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 53/169 (31.36%), Postives = 77/169 (45.56%), Query Frame = 3

Query:   84 MDSPASSPDSGNLPRKVIA-IAAGEAHTLALTGDGRVFSWGRGMFGRLGNGSESDELFPVRVNFGDSEQLKFVGVAAGAYHSLALADDGSVWCWGYNSYGQLGFSG-SNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKA--GGMMSLAIDNAGALWMWGNC 578
            ++ P     +G L  KV+  IA G+   +A+   G V+ WG    G+LG G+  ++  P RV     + ++   VA G  H+L L D+G V+ WG NSYGQLG    SN   P           P ++E D         +I  + A      S A    G ++MWG C
Sbjct:  190 VNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQPTPCRV--AALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYP----------TPVTVEKD---------RIIEIAACHSTHTSAAKTQGGHVYMWGQC 337

[Close]

BLAST of FC869137 vs. ExPASy Swiss-Prot
Match: RCBT1_HUMAN (RCC1 and BTB domain-containing protein 1 OS=Homo sapiens GN=RCBTB1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 48/152 (31.58%), Postives = 78/152 (51.32%), Query Frame = 3

Query:  120 LPRKVIAIAAGEAHTLALTGDGRVFSWGRGMFGRLGNGSESDELFPVRVNFGDSEQLKFVGVAAGAYHSLALADDGSVWCWGYNSYGQLGF-SGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWG 572
            L ++V+ +A G  H++AL  DG VF+WG    G++G+GS +++  P +V        + VG+A G   S+A+ D+G V+ WGYN  GQLG  +  N L P      + + A  S            + +  +  G   +LA+ + G L+ WG
Sbjct:  126 LIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPRKVT-NCLHIKRVVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTP------VRVAALHS------------VCVNQIVCGYAHTLALTDEGLLYAWG 258

HSP 2 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 49/150 (32.67%), Postives = 80/150 (53.33%), Query Frame = 3

Query:  126 RKVIAIAAGEA-HTLALTGDGRVFSWGRGMFGRLGNGSESDELFPVRVNFGDSEQLKFVGVAAGAYHSLALADDGSVWCWGYNSYGQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWG 572
            +K+ +++ G   H L  T DG V++WG   + +LGNG+ +  + PV+V   +    + V VA G++HS+ALA DG V+ WGYN+ GQ+G SGS +  P           P  +     TN     ++  +  G   S+A+ + G ++ WG
Sbjct:   74 KKIKSLSYGSGPHVLLSTEDGVVYAWGHNGYSQLGNGTTNQGIAPVQV-CTNLLIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVG-SGSTANQP----------TPRKV-----TNCLHIKRVVGIACGQTSSMAVLDNGEVYGWG 206

HSP 3 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 46/151 (30.46%), Postives = 74/151 (49.01%), Query Frame = 3

Query:  126 RKVIAIAAGEAHTLALTGDGRVFSWGRGMFGRLGNGSESDELFPVRVNFGDSEQLKFVGVAAGAYHSLALADDGSVWCWGYNSYGQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWGNC 578
            ++V+ IA G+  ++A+  +G V+ WG    G+LG G+  ++L PVRV    S  +    +  G  H+LAL D+G ++ WG N+YGQLG    N+L+           +P  +  + +      I  C        S A    G ++MWG C
Sbjct:  181 KRVVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSVCVN--QIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLL-----------SPAHIMVEKE--RVVEIAACH---SAHTSAAKTQGGHVYMWGQC 313

[Close]

BLAST of FC869137 vs. ExPASy Swiss-Prot
Match: HERC6_HUMAN (Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-14
Identity = 51/162 (31.48%), Postives = 76/162 (46.91%), Query Frame = 3

Query:  114 GNLPRKVIA--------IAAGEAHTLALTGDGRVFSWGRGMFGRLGNGSESDELFPVRVNFGDSEQLKFVGVAAGAYHSLALADDGSVWCWGYNSYGQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWGN 575
            G LP  + A        ++ G+ H+LA+   GRVF+WG G  G+LG G   +  F  +        +K + V+ G YHSLAL+ D  V+ WG NS+GQLG            ++F +  +P       +      I +  V AGG  S A+   G  + WG+
Sbjct:   63 GELPEPIQALETLIVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPK-KIMTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLGLG----------KEFPSQASP------QRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGS 207

HSP 2 Score: 75.485 bits (184), Expect = 2.843e-13
Identity = 47/112 (41.96%), Postives = 64/112 (57.14%), Query Frame = 3

Query:  129 KVIAIAAGEAHTLALTGDGRVFSWGRGMFGRLGNGSE-SDELFPVRVNFGDSEQLKFVGVAAGAYHSLALADDGSVWCWGYNSYGQLGFSGSNSLVPCVIEQFLTIGAPDSL 461
            K+I ++ G  H+LAL+ D +VFSWG+   G+LG G E   +  P RV     E +    VAAG  HS AL+  G+ + WG NS GQL  SG N  VP    + L++GA  +L
Sbjct:  129 KIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVR--SLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSGRN--VPVQSNKPLSVGALKNL 236

[Close]

BLAST of FC869137 vs. ExPASy Swiss-Prot
Match: RCBT1_MOUSE (RCC1 and BTB domain-containing protein 1 OS=Mus musculus GN=Rcbtb1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.850e-13
Identity = 47/150 (31.33%), Postives = 82/150 (54.67%), Query Frame = 3

Query:  126 RKVIAIAAGEA-HTLALTGDGRVFSWGRGMFGRLGNGSESDELFPVRVNFGDSEQLKFVGVAAGAYHSLALADDGSVWCWGYNSYGQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWG 572
            +K+ +++ G   H L  T DG V++WG   + +LGNG+ +  + PV+V   +    + + VA G++HS+ALA DG ++ WGYN+ GQ+G SGS +  P           P  +     TN     ++ ++  G   S+A+ ++G ++ WG
Sbjct:   74 KKIKSLSYGSGPHVLLTTEDGVVYAWGHNGYSQLGNGTTNQGIAPVQV-CTNLLIKQVIEVACGSHHSMALAADGELFAWGYNNCGQVG-SGSTANQP----------TPRKV-----TNCLHTKRVVNIACGQTSSMAVLDSGEVYGWG 206

HSP 2 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 3

Query:  120 LPRKVIAIAAGEAHTLALTGDGRVFSWGRGMFGRLGNGSESDELFPVRVNFGDSEQLKFVGVAAGAYHSLALADDGSVWCWGYNSYGQLGF-SGSNSLVP 416
            L ++VI +A G  H++AL  DG +F+WG    G++G+GS +++  P +V        + V +A G   S+A+ D G V+ WGYN  GQLG  +  N L P
Sbjct:  126 LIKQVIEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTANQPTPRKVT-NCLHTKRVVNIACGQTSSMAVLDSGEVYGWGYNGNGQLGLGNNGNQLTP 224

HSP 3 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 48/156 (30.77%), Postives = 73/156 (46.79%), Query Frame = 3

Query:  126 RKVIAIAAGEAHTLALTGDGRVFSWGRGMFGRLGNGSESDELFPVRVNFGDSEQLKFVGVAAGAYHSLALADDGSVWCWGYNSYGQLGFSGSNSLV-PCVI----EQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWGNC 578
            ++V+ IA G+  ++A+   G V+ WG    G+LG G+  ++L PVRV       +    +  G  H+LAL D+G ++ WG N+YGQLG    N+L+ P  I    E+ + I A  S                        S A    G ++MWG C
Sbjct:  181 KRVVNIACGQTSSMAVLDSGEVYGWGYNGNGQLGLGNNGNQLTPVRV--AALHGMCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGSKNNLLSPTQIMVEKERVIEIAACHSTH---------------------TSAAKTQGGHVYMWGQC 313

[Close]

BLAST of FC869137 vs. ExPASy Swiss-Prot
Match: RPGRH_CAEEL (X-linked retinitis pigmentosa GTPase regulator homolog OS=Caenorhabditis elegans GN=glo-4 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 31/90 (34.44%), Postives = 59/90 (65.56%), Query Frame = 3

Query:  120 LPRKVIAIAAGEAHTLALTGDGRVFSWGRGMFGRLGNGSESDELFPVRVNFGDSEQLKFVGVAAGAYHSLALADDGSVWCWGYNSYGQLG 389
            L   ++++A G +H+  +T +G +++WG+G+  +LG+G++++ + P +V   +    K+V V+ G  H++A  DDGSV+ WG N +GQ G
Sbjct: 1020 LDGNIVSVACGLSHSALITSEGTLYTWGKGLDYQLGHGNKNERMEPHQV--FEPNGAKWVNVSLGNNHTIASTDDGSVFAWGKNDFGQCG 1107

[Close]

BLAST of FC869137 vs. ExPASy Swiss-Prot
Match: SPKUL_DICDI (Bifunctional serine/threonine-protein kinase/NEDD4-like E3 ubiquitin-protein ligase OS=Dictyostelium discoideum GN=DDB_G0276527 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 51/164 (31.10%), Postives = 78/164 (47.56%), Query Frame = 3

Query:   90 SPASSPDSGNLPRKVIAIAAGEAHTLALTGDGRVFSWGRGMFGRLGNGSESDELFPVRVNFGDSEQLKF-VGVAAGAYHSLALADDGSVWCWGYNSYGQLGFS--GSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWG 572
            S + +  S N   K++ ++ G   +  +T  G +F++GRG  GRLG G +S  L         S Q  F + +++G  HSL L + G V+ +G N  GQLG     +   +P  I+ F T          S+   + PI I  V AGG  S+AI +    + WG
Sbjct:  326 SLSQNSSSNNNKIKIVKLSCGTNRSAVITDKGLLFTFGRGDHGRLGLGEQS-LLMQSTPKLVQSLQGHFIIDMSSGGGHSLVLTNKGLVFSFGRNDQGQLGIGCFSNQQTIPKQIQWFQT----------SQQQQQQPINIIKVSAGGYHSIAISDNNDTYAWG 478

HSP 2 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 48/158 (30.38%), Postives = 82/158 (51.90%), Query Frame = 3

Query:  132 VIAIAAGEAHTLALTGDGRVFSWGRGMFGRLGNGSESDE-LFPVRVNFGDSEQ------LKFVGVAAGAYHSLALADDGSVWCWGYNSYGQLGFS----GSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWG 572
            +I +++G  H+L LT  G VFS+GR   G+LG G  S++   P ++ +  + Q      +  + V+AG YHS+A++D+   + WG + YG LG S    G  +L P +I         +S+  D+       +K   V +G   ++A+   G+L+ WG
Sbjct:  394 IIDMSSGGGHSLVLTNKGLVFSFGRNDQGQLGIGCFSNQQTIPKQIQWFQTSQQQQQQPINIIKVSAGGYHSIAISDNNDTYAWGRSDYGVLGTSIDVQGDRNL-PVLINS-------NSVVVDN-------VKFIDVSSGFQHNVAMSIDGSLYSWG 536

HSP 3 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 35/103 (33.98%), Postives = 61/103 (59.22%), Query Frame = 3

Query:  123 PRKVIAIAAGEAHTLALTGDGRVFSWGRGMFGRLGNGSE--SDELFPVRVNFGDS--EQLKFVGVAAGAYHSLALADDGSVWCWGYNSYGQLGF-SGSNSLVP 416
            P  +I ++AG  H++A++ +   ++WGR  +G LG   +   D   PV +N      + +KF+ V++G  H++A++ DGS++ WG N+  +LGF S  N L P
Sbjct:  452 PINIIKVSAGGYHSIAISDNNDTYAWGRSDYGVLGTSIDVQGDRNLPVLINSNSVVVDNVKFIDVSSGFQHNVAMSIDGSLYSWGCNAGQRLGFKSDENQLTP 554

[Close]

BLAST of FC869137 vs. ExPASy Swiss-Prot
Match: HERC5_HUMAN (Probable E3 ubiquitin-protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 3

Query:  141 IAAGEAHTLALTGDGRVFSWGRGMFGRLGNGSESDELFPVRVNFGDSEQLKFVGVAAGAYHSLALADDGSVWCWGYNSYGQLGF-SGSNSLVPCVIEQFL 437
            I+AGEAH++AL+  G ++SWG+   G+LG G    +  P  +   D+++++F  VA G  HS  L  DG ++ +G   +GQLG  S  N L PC++ + +
Sbjct:  196 ISAGEAHSMALSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQKVEF--VACGGSHSALLTQDGLLFTFGAGKHGQLGHNSTQNELRPCLVAELV 293

HSP 2 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 48/152 (31.58%), Postives = 72/152 (47.37%), Query Frame = 3

Query:  126 RKVIAIAAGEAHTLALTGDGRVFSWGRGMFGRLGNGSESDELFPVRVNFGDSEQLKFVGVA---AGAYHSLALADDGSVWCWGYNSYGQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWG 572
            +K+I I  G+ H+LAL+  G +F+WG+ + G+LG G +    FP        E L  V +A   AG  HS+AL+  G+++ WG N  GQLG                 +G  +S +D S        K+  V  GG  S  +   G L+ +G
Sbjct:  138 KKIIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRK----FPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKNECGQLG-----------------LGHTESKDDPSLIEGLDNQKVEFVACGGSHSALLTQDGLLFTFG 268

[Close]

BLAST of FC869137 vs. ExPASy Swiss-Prot
Match: TIRA_DICDI (Protein tirA OS=Dictyostelium discoideum GN=tirA PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11
Identity = 47/143 (32.87%), Postives = 78/143 (54.55%), Query Frame = 3

Query:  117 NLPRKVIAIAAGEAHTLALTGDGRVFSWGRGMFGRLGNG-SESDELFPVR-VNFG---DSEQLKFVG-VAAGAYHSLALADDGS------VWCWGYNSYGQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICS 509
            N  +KV+ ++ G+   + LT +G+VFSWG+   G+LG G S+S E + ++ VNF    DS   KF+  ++ G  HS+A+  + S      ++ WG NS GQ+G   S+  VP +I+           +D    N K+P+ +C+
Sbjct:  442 NFLKKVLMVSCGKDFNVLLTNEGQVFSWGKNDQGQLGLGNSDSKENYEIKLVNFDDPYDSNSNKFISFISCGGNHSIAIESNSSTDGNCRLYGWGSNSQGQIGEKYSS--VPILIKN----------QDQKSFNWKSPLVLCT 572

[Close]

BLAST of FC869137 vs. ExPASy Swiss-Prot
Match: RCC2_XENLA (Protein RCC2 homolog OS=Xenopus laevis GN=rcc2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 53/156 (33.97%), Postives = 75/156 (48.08%), Query Frame = 3

Query:  129 KVIAIAAGE--AHTLALTGDGRVFSWGRGMFGRLGNGSESDELFPVRVNFGDSEQLK---FVGVAAGAYHSLALADDGSVWCWGYNSYGQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWGNCP 581
            +V ++A+G   AH+L +T +G+++SWGR   G+LG+G       P  +     E LK   FV  A G  H+LAL ++GSV+ +G N  GQLG       VP    Q L  G P                I  V  G   S+ +D  G L+ +G CP
Sbjct:  140 QVRSVASGSCAAHSLLITVEGKLWSWGRNDKGQLGHGDIKRIDVPKLI-----ESLKGEVFVHAACGRNHTLALTENGSVYAFGENKMGQLGLGNKTDAVPSP-AQILYNGQP----------------ITKVACGAEFSMIMDCKGNLYSFG-CP 272

The following BLAST results are available for this feature:

BLAST of FC869137 vs. ExPASy Swiss-Prot

BLAST of FC869137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20


Match Name	E-value	Identity	Description
RCBT2_PONAB	1.508e-14	30.67	RCC1 and BTB domain-containing protein 2 OS=Pongo ...	[more]
RCBT2_HUMAN	1.508e-14	30.67	RCC1 and BTB domain-containing protein 2 OS=Homo s...	[more]
RCBT1_HUMAN	4.386e-14	31.58	RCC1 and BTB domain-containing protein 1 OS=Homo s...	[more]
HERC6_HUMAN	5.729e-14	31.48	Probable E3 ubiquitin-protein ligase HERC6 OS=Homo...	[more]
RCBT1_MOUSE	4.850e-13	31.33	RCC1 and BTB domain-containing protein 1 OS=Mus mu...	[more]
RPGRH_CAEEL	3.143e-12	34.44	X-linked retinitis pigmentosa GTPase regulator hom...	[more]
SPKUL_DICDI	9.146e-12	31.10	Bifunctional serine/threonine-protein kinase/NEDD4...	[more]
HERC5_HUMAN	9.146e-12	37.00	Probable E3 ubiquitin-protein ligase HERC5 OS=Homo...	[more]
TIRA_DICDI	3.475e-11	32.87	Protein tirA OS=Dictyostelium discoideum GN=tirA P...	[more]
RCC2_XENLA	5.928e-11	33.97	Protein RCC2 homolog OS=Xenopus laevis GN=rcc2 PE=...	[more]

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Properties


Property Name	Value
Genbank description	C31008H08EF AbioticL1 Citrus clementina cDNA clone C31008H08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC869137 ID=FC869137; Name=FC869137; organism=Citrus clementina; type=EST; length=671bp
GGGAACATAAACTGCTGAAGTCCTGATAGATCATTCTGGTGAACTGTAAA
CAGTGTACCATTAAACTAAGATACAAATTGGTAATGGATTCGCCGGCATC
GTCGCCAGATTCCGGCAATTTACCCCGAAAAGTCATTGCCATTGCTGCCG
GCGAAGCTCATACTCTTGCTCTCACTGGGGATGGGCGCGTGTTCTCGTGG
GGAAGAGGAATGTTTGGTCGACTCGGTAACGGTTCTGAATCAGATGAGCT
GTTTCCGGTTCGGGTCAATTTTGGTGATTCTGAGCAGCTCAAGTTTGTGG
GAGTTGCTGCTGGTGCTTATCATAGCCTTGCTCTTGCAGATGATGGCTCA
GTCTGGTGCTGGGGTTACAACAGCTATGGCCAACTTGGTTTTAGCGGAAG
CAATTCCTTGGTACCTTGTGTGATTGAACAGTTCCTTACAATAGGTGCTC
CTGATTCTTTGGAAGATGATTCAAAAACTAACCATAAAGCACCAATAAAG
ATTTGTTCTGTCAAAGCTGGAGGAATGATGTCTCTGGCAATTGATAACGC
TGGAGCTTTGTGGATGTGGGGCAATTGCCCTCTGCTGGACAGCAGCACTG
AAGGTGGTTTCTCTCTTGTAAGCAGTTTCACTCCTAGTCCAGTCTGGGAT
TTTCATGGTCACACTGTTGTT