FC869141

Overview
NameFC869141
Unique NameFC869141
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869141 vs. ExPASy Swiss-Prot
Match: RS3A_CAEBR (40S ribosomal protein S3a OS=Caenorhabditis briggsae GN=rps-1 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.172e-54
Identity = 109/175 (62.29%), Postives = 131/175 (74.86%), Query Frame = 1
Query:  151 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKRTS 675
            +WYDIKAP+ F  R VGKTL+ RTQGTKIASEGLK RVFEVSLGDL N  E  +RK +L AEDVQGKNVLTNF  M+ T DKL S+V+KWHTLIEA   VKTTD +TLR+F I FTK+  NQVK+T Y +TS+IR+IR +M   +  +   CDLK +V K I + IG++IEK  S
Sbjct:   27 EWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL-NNSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSANQVKKTSYTKTSKIRKIRSEMISCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCS 200          
BLAST of FC869141 vs. ExPASy Swiss-Prot
Match: RS3A2_DEBHA (40S ribosomal protein S1-B OS=Debaryomyces hansenii GN=RPS1B PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.172e-54
Identity = 102/176 (57.95%), Postives = 136/176 (77.27%), Query Frame = 1
Query:  151 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKRTSS 678
            +W+DIKAPS F  R VGKTL+ R+ G K A++GLK RV EV L DL   E+H+ RK++LR ++VQGKN+LTNF G++FTTDKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR  NQ+++T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK T +
Sbjct:   28 EWFDIKAPSTFENRAVGKTLINRSTGLKNAADGLKGRVVEVCLADLQGSEDHSSRKVKLRVDEVQGKNLLTNFHGIDFTTDKLRSLVRKWQSLVEANVTVKTSDDYVLRIFAIAFTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQT 203          
BLAST of FC869141 vs. ExPASy Swiss-Prot
Match: RS3A1_DEBHA (40S ribosomal protein S1-A OS=Debaryomyces hansenii GN=RPS1A PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.172e-54
Identity = 102/176 (57.95%), Postives = 136/176 (77.27%), Query Frame = 1
Query:  151 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKRTSS 678
            +W+DIKAPS F  R VGKTL+ R+ G K A++GLK RV EV L DL   E+H+ RK++LR ++VQGKN+LTNF G++FTTDKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR  NQ+++T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK T +
Sbjct:   28 EWFDIKAPSTFENRAVGKTLINRSTGLKNAADGLKGRVVEVCLADLQGSEDHSSRKVKLRVDEVQGKNLLTNFHGIDFTTDKLRSLVRKWQSLVEANVTVKTSDDYVLRIFAIAFTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQT 203          
BLAST of FC869141 vs. ExPASy Swiss-Prot
Match: RS3A_USTMA (40S ribosomal protein S1 OS=Ustilago maydis GN=RPS1 PE=3 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.531e-54
Identity = 104/174 (59.77%), Postives = 131/174 (75.29%), Query Frame = 1
Query:  151 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKRT 672
            DWYDIKAP+ F  RNVGKT V R+QG K A + LK R+ E SL DL  ++E AYRK +L+ + +QG+  LTNF+GM+FT+DKLRSLVRKW +LIEA+ DVKTTD + LR+F I FTK+  NQVK+  YA++S IR IR+KM EI+  +A SCDL+  V K I EVIGRE+EK T
Sbjct:   27 DWYDIKAPTFFENRNVGKTFVNRSQGLKNADDSLKGRIVEASLADLNKDDEQAYRKFKLKVDGIQGRTCLTNFYGMDFTSDKLRSLVRKWQSLIEAHQDVKTTDGYLLRVFVIAFTKKRANQVKKNTYAKSSHIRAIRQKMFEIVQREANSCDLREFVAKLIPEVIGREVEKAT 200          
BLAST of FC869141 vs. ExPASy Swiss-Prot
Match: RS3A1_SCHPO (40S ribosomal protein S1-A OS=Schizosaccharomyces pombe GN=rps101 PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.999e-54
Identity = 104/176 (59.09%), Postives = 133/176 (75.57%), Query Frame = 1
Query:  151 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKRTSS 678
            DWYDIKAP+ F V+NVGKTLV RT G K A++ LK R+ EVSL DL  +EEH++RK++LR ED+QGK+ LT+F G + T+DKLRSLVRKW + IEA   +KTTD +  R+F IGFT R  NQVK+T YAQ+SQIR I +KM +++  QA  C +K LV+K I EVIGR IEK T++
Sbjct:   28 DWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEEHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNN 203          
BLAST of FC869141 vs. ExPASy Swiss-Prot
Match: RS3A_CAEEL (40S ribosomal protein S3a OS=Caenorhabditis elegans GN=rps-1 PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.611e-54
Identity = 109/175 (62.29%), Postives = 131/175 (74.86%), Query Frame = 1
Query:  151 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKRTS 675
            +WYDIKAP+ F  R VGKTL+ RTQGTKIASEGLK RVFEVSLGDL N  E  +RK +L AEDVQGKNVLTNF  M+ T DKL S+V+KWHTLIEA   VKTTD +TLR+F I FTK+  NQVK+T Y +TS+IR+IR +M   +  +   CDLK +V K I + IG++IEK  S
Sbjct:   27 EWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL-NNSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCS 200          
BLAST of FC869141 vs. ExPASy Swiss-Prot
Match: RS3A_BRUMA (40S ribosomal protein S3a OS=Brugia malayi GN=Bm1_27225 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.611e-54
Identity = 108/175 (61.71%), Postives = 132/175 (75.43%), Query Frame = 1
Query:  151 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKRTS 675
            +WYDIKAPS F V+++GKTLV RTQGTKIASEGLK RV+EVSLGDL N  E  +RK+RL  EDVQG+  LTNF GM  T DKL S+V+KWHTLIEA V VKT+D + LRLFCIGFTK+   Q+K+T YA++S+IRQIR KM E M  +    DLK +  K + + IG++IEK  S
Sbjct:   26 EWYDIKAPSMFNVQHIGKTLVNRTQGTKIASEGLKGRVYEVSLGDL-NNAESEFRKMRLICEDVQGRTCLTNFHGMRLTRDKLCSIVKKWHTLIEANVAVKTSDGYLLRLFCIGFTKKNARQLKKTSYAKSSKIRQIRAKMVEYMQKEVQGSDLKDVCHKLVPDSIGKDIEKACS 199          
BLAST of FC869141 vs. ExPASy Swiss-Prot
Match: RS3A_LYSTE (40S ribosomal protein S3a OS=Lysiphlebus testaceipes PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.454e-54
Identity = 106/174 (60.92%), Postives = 130/174 (74.71%), Query Frame = 1
Query:  151 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEK 666
            DWYDIKAPS F  R VGKTLV RTQGTKIASEGLK RV EVSL DL ++   E ++RK RL  EDVQ ++VL NF GM+ TTDKLRS+V+KW TLIEA+VDVKTTD + LR+FCIGFT++     ++T YAQ SQ+R IRRKM  I+  +   CDLK +V K + + I ++IEK
Sbjct:   29 DWYDIKAPSMFTTRQVGKTLVNRTQGTKIASEGLKGRVVEVSLADLQSDADAERSFRKFRLIVEDVQNRSVLCNFHGMDLTTDKLRSMVKKWQTLIEAHVDVKTTDGYLLRIFCIGFTQKDQMSTRKTSYAQHSQVRNIRRKMVSIVTDEITKCDLKGVVTKLVPDAIAKDIEK 202          
BLAST of FC869141 vs. ExPASy Swiss-Prot
Match: RS3A_ARTSF (40S ribosomal protein S3a OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.454e-54
Identity = 107/178 (60.11%), Postives = 134/178 (75.28%), Query Frame = 1
Query:  151 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEE--HAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKRTSS 678
            DWYD+KAPS F  R++GKTLV RT GTKIAS+ LK RVFEVSL DL  E E   ++RK RL AE+VQG+ +LTNF GM+FTTDKLRSLV+KW TLIE  VDVKTTD++ LR+FCIGFT++     ++TCYAQ +Q+R IR+KM EI+  + +S DLK  V K I + I ++IEK   S
Sbjct:   29 DWYDVKAPSLFTNRDIGKTLVNRTAGTKIASDSLKGRVFEVSLADLQGESEAERSFRKFRLIAEEVQGRYLLTNFHGMDFTTDKLRSLVKKWQTLIECSVDVKTTDSYLLRVFCIGFTQKDQRSQRKTCYAQHTQVRAIRKKMTEIITKEISSGDLKEAVSKLIPDSIAKDIEKSCHS 206          
BLAST of FC869141 vs. ExPASy Swiss-Prot
Match: RS3A_PICPG (40S ribosomal protein S1 OS=Pichia pastoris (strain GS115) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.296e-53
Identity = 101/172 (58.72%), Postives = 132/172 (76.74%), Query Frame = 1
Query:  151 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEK 666
            +WYDIKAP+ F  RNVGKTL+ ++ G K A +GLK RV EVSL DL   E+H+++KI+LR ++VQGKN+LTNF G +FT+DK+RSLVRKW +L+EA V VKT D++ LR+FCI FT+R  NQ+K+T YAQ+SQ+  IR+KM EIM  + ++  L  L  K I EVIGREIEK
Sbjct:   28 EWYDIKAPTTFENRNVGKTLINKSTGLKNAVDGLKGRVVEVSLADLQGSEDHSFKKIKLRVDEVQGKNLLTNFHGFDFTSDKVRSLVRKWQSLVEANVTVKTADDYVLRIFCIAFTRRHQNQIKKTTYAQSSQLSAIRKKMVEIMQREVSNVTLAQLTSKLIPEVIGREIEK 199          
The following BLAST results are available for this feature:
BLAST of FC869141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
RS3A_CAEBR1.172e-5462.2940S ribosomal protein S3a OS=Caenorhabditis briggs... [more]
RS3A2_DEBHA1.172e-5457.9540S ribosomal protein S1-B OS=Debaryomyces hanseni... [more]
RS3A1_DEBHA1.172e-5457.9540S ribosomal protein S1-A OS=Debaryomyces hanseni... [more]
RS3A_USTMA1.531e-5459.7740S ribosomal protein S1 OS=Ustilago maydis GN=RPS... [more]
RS3A1_SCHPO1.999e-5459.0940S ribosomal protein S1-A OS=Schizosaccharomyces ... [more]
RS3A_CAEEL2.611e-5462.2940S ribosomal protein S3a OS=Caenorhabditis elegan... [more]
RS3A_BRUMA2.611e-5461.7140S ribosomal protein S3a OS=Brugia malayi GN=Bm1_... [more]
RS3A_LYSTE4.454e-5460.9240S ribosomal protein S3a OS=Lysiphlebus testaceip... [more]
RS3A_ARTSF4.454e-5460.1140S ribosomal protein S3a OS=Artemia sanfranciscan... [more]
RS3A_PICPG1.296e-5358.7240S ribosomal protein S1 OS=Pichia pastoris (strai... [more]

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Properties
Property NameValue
Genbank descriptionC31008H12EF AbioticL1 Citrus clementina cDNA clone C31008H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869141 ID=FC869141; Name=FC869141; organism=Citrus clementina; type=EST; length=678bp
TTCACTCAAAACGTCCGAGCTAGGACTAGGTAGCAGCGGAGCCGTCTCTT
GAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGGATTTCAA
AGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGAAG
GACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGG
CAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATTGCATCAGAAGGTC
TCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAATGAAGAA
GAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCCAAGGGAA
GAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGACAAGCTGA
GGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGTGGATGTC
AAGACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGATTCACCAA
GAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACCAGCCAGA
TTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCAGGCAGCA
TCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAGTGATTGG
CAGAGAGATTGAGAAGCGCACGTCCAGC
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