FC869142 | Citrus Genome Database

Overview


Name	FC869142
Unique Name	FC869142
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	578

Libraries


Library Name	Type
AbioticL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC869142 vs. ExPASy Swiss-Prot
Match: KIF3B_HUMAN (Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3B PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.332e-24
Identity = 58/119 (48.74%), Postives = 80/119 (67.23%), Query Frame = 3

Query:  201 EAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAAL-RRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSEDLK 554
            E    V KL +VDL GSER  KTGA G+ L E   INLSLSAL +VI+AL   K  H+PYR+SKLT++L+DSLG  +K +M+ +  P   +V ET+ +L +A RA+ I++   ++ED K
Sbjct:  233 ENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPK 351

HSP 2 Score: 28.1054 bits (61), Expect = 1.332e-24
Identity = 13/27 (48.15%), Postives = 16/27 (59.26%), Query Frame = 1

Query:   79 NKGRRVRSTSWTNVNEASSRSHCFIYL 159
            N G + RS   TN+NE SSRSH    +
Sbjct:  195 NVGNQNRSVGATNMNEHSSRSHAIFVI 221

[Close]

BLAST of FC869142 vs. ExPASy Swiss-Prot
Match: KRP95_STRPU (Kinesin-II 95 kDa subunit OS=Strongylocentrotus purpuratus GN=KRP95 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.332e-24
Identity = 59/119 (49.58%), Postives = 80/119 (67.23%), Query Frame = 3

Query:  201 EAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAAL-RRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSEDLK 554
            E    V KL +VDL GSER  KTGATG  L E   INLSLSAL +VI+AL   K  H+PYR+SKLT++L+DSLG  +K +M+ +  P   +  ETI +L +A RA+ I++  +++ED K
Sbjct:  232 ENHIRVGKLNLVDLAGSERQAKTGATGDRLKEATKINLSLSALGNVISALVDGKSSHIPYRDSKLTRLLQDSLGGNAKTVMVANMGPASYNFDETITTLRYANRAKNIKNKPKINEDPK 350

HSP 2 Score: 26.1794 bits (56), Expect = 1.332e-24
Identity = 12/25 (48.00%), Postives = 14/25 (56.00%), Query Frame = 1

Query:   85 GRRVRSTSWTNVNEASSRSHCFIYL 159
            G   RS   TN+NE SSRSH    +
Sbjct:  196 GNNNRSVGSTNMNEHSSRSHAIFII 220

[Close]

BLAST of FC869142 vs. ExPASy Swiss-Prot
Match: KIF27_RAT (Kinesin-like protein KIF27 OS=Rattus norvegicus GN=Kif27 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.234e-24
Identity = 55/112 (49.11%), Postives = 72/112 (64.29%), Query Frame = 3

Query:  216 VSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAAL---RRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELS 542
            VSK   VDL GSERV KTG TG+   E   IN  L AL +VI+AL   RRK  HVPYR++K+T++L+DSLG  +K +M+   SP   D  E++ SL +A RAR I +   L+
Sbjct:  237 VSKFHFVDLAGSERVTKTGNTGERFKESIQINSGLLALGNVISALGDPRRKSSHVPYRDAKITRLLKDSLGGSAKTVMITCVSPSSSDFDESLNSLKYANRARNIRNKPTLN 348

HSP 2 Score: 32.7278 bits (73), Expect = 2.234e-24
Identity = 18/54 (33.33%), Postives = 22/54 (40.74%), Query Frame = 1

Query:    1 DAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCFIYLA 162
            D KG   I G  E Q+            G   R T  T +NE SSRSH    ++
Sbjct:  161 DEKGNTVIVGAKECQVDSVEDVMGLLQVGNAARHTGTTQMNEHSSRSHAIFTIS 214

[Close]

BLAST of FC869142 vs. ExPASy Swiss-Prot
Match: KINH_NEUCR (Kinesin heavy chain OS=Neurospora crassa GN=kin PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.248e-24
Identity = 54/111 (48.65%), Postives = 80/111 (72.07%), Query Frame = 3

Query:  222 KLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRR-KRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSEDL 551
            +L++VDL GSE+V KTGA+GQTL+E + IN SLSAL  VI AL   K  HVPYR+SKLT+IL++SLG  S+  ++++ SP   +  ET+ +L F  RA+ I++  +++ +L
Sbjct:  230 QLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAEL 340

HSP 2 Score: 30.8018 bits (68), Expect = 2.248e-24
Identity = 14/43 (32.56%), Postives = 24/43 (55.81%), Query Frame = 1

Query:   16 VEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSH 144
            V ++GL E+ +    +      +G   R+ + TN+N+ SSRSH
Sbjct:  167 VYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSH 209

[Close]

BLAST of FC869142 vs. ExPASy Swiss-Prot
Match: ATK2_ARATH (Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.256e-24
Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = 3

Query:  231 MVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIE 524
            ++DL GSER+ K+G+TG  L E +AIN SLS+L DVI AL +K  HVP+RNSKLT +L+  LG  SK LM V+ +P     GE++CSL FA R    E
Sbjct:  628 LIDLAGSERLSKSGSTGDRLKETQAINKSLSSLGDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNITPEPSSTGESLCSLRFAARVNACE 725

HSP 2 Score: 30.8018 bits (68), Expect = 2.256e-24
Identity = 17/48 (35.42%), Postives = 23/48 (47.92%), Query Frame = 1

Query:    1 DAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSH 144
            DA G   +  LT V +    +  +  +   R RS   T +NE SSRSH
Sbjct:  557 DASGNTHVVELTVVDVRSSKQVSFLLDHAARNRSVGKTAMNEQSSRSH 604

[Close]

BLAST of FC869142 vs. ExPASy Swiss-Prot
Match: KLP3_SCHPO (Kinesin-like protein 3 OS=Schizosaccharomyces pombe GN=klp3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.267e-24
Identity = 59/128 (46.09%), Postives = 82/128 (64.06%), Query Frame = 3

Query:  192 DALEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALR-RKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIES----NRELSEDLKKR 560
            D    +T   +L++VDL GSE V K+GA GQTL+E + IN SLS L  VI +L   K  HVPYR+SKLT+IL++SLG  S+  ++++ SP   +  ET+ +L F  RA+ I++    N ELS D  KR
Sbjct:  215 DTESGETRRGRLFLVDLAGSESVGKSGAVGQTLEEAKKINRSLSTLGMVINSLTDSKLSHVPYRDSKLTRILKESLGGNSRTTLIINCSPDSYNATETLSTLRFGHRAKSIKNKAVVNSELSVDEMKR 342

HSP 2 Score: 31.5722 bits (70), Expect = 2.267e-24
Identity = 17/48 (35.42%), Postives = 26/48 (54.17%), Query Frame = 1

Query:   16 VEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCFIYL 159
            V ++GL  + +   T+A    NKG   R+ + T++N  SSRSH    L
Sbjct:  162 VYVQGLKTIYVSSETEALDILNKGMGSRAVASTSMNAQSSRSHSIFVL 209

[Close]

BLAST of FC869142 vs. ExPASy Swiss-Prot
Match: ATK1_ARATH (Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.933e-24
Identity = 55/98 (56.12%), Postives = 68/98 (69.39%), Query Frame = 3

Query:  231 MVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIE 524
            ++DL GSER+ K+GATG  L E +AIN SLSAL+DVI AL +K  HVP+RNSKLT +L+  LG  SK LM V+ SP     GE++CSL FA R    E
Sbjct:  676 LIDLAGSERLSKSGATGDRLKETQAINKSLSALSDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDPTSAGESLCSLRFAARVNACE 773

HSP 2 Score: 26.5646 bits (57), Expect = 2.933e-24
Identity = 15/48 (31.25%), Postives = 20/48 (41.67%), Query Frame = 1

Query:    1 DAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSH 144
            D  G   +  LT   +    K      +  + RS   T +NE SSRSH
Sbjct:  605 DVNGHTHVSDLTIFDVCSVGKISSLLQQAAQSRSVGKTQMNEQSSRSH 652

[Close]

BLAST of FC869142 vs. ExPASy Swiss-Prot
Match: ATK4_ARATH (Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.472e-24
Identity = 62/124 (50.00%), Postives = 81/124 (65.32%), Query Frame = 3

Query:  231 MVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIE--------SNRELSEDLKKRXEIRMA 578
            +VDL GSERV K+  TG  L E + IN SLSAL DVI++L +K  HVPYRNSKLTQ+L+DSLG  +K LM VH SP  + +GETI +L FA+R   +E         N E+ E  ++   ++MA
Sbjct:  625 LVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVISSLSQKTSHVPYRNSKLTQLLQDSLGGSAKTLMFVHISPEPDTLGETISTLKFAERVGSVELGAARVNKDNSEVKELKEQIANLKMA 748

[Close]

BLAST of FC869142 vs. ExPASy Swiss-Prot
Match: KIF27_MOUSE (Kinesin-like protein KIF27 OS=Mus musculus GN=Kif27 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.783e-24
Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = 3

Query:  216 VSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAAL---RRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELS 542
            VSK   VDL GSERV KTG TG+   E   IN  L AL +VI+AL   RRK  H+PYR++K+T++L+DSLG  +K +M+   SP   D  E++ SL +A RAR I +   L+
Sbjct:  237 VSKFHFVDLAGSERVTKTGNTGERFKESIQINSGLLALGNVISALGDPRRKSSHIPYRDAKITRLLKDSLGGSAKTVMITCVSPSSSDFDESLNSLKYANRARNIRNKPALN 348

HSP 2 Score: 32.3426 bits (72), Expect = 3.783e-24
Identity = 18/54 (33.33%), Postives = 22/54 (40.74%), Query Frame = 1

Query:    1 DAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCFIYLA 162
            D KG   I G  E Q+            G   R T  T +NE SSRSH    ++
Sbjct:  161 DEKGNTVIVGAKECQVESVEDVMSLLQVGNAARHTGTTQMNEHSSRSHAIFTIS 214

[Close]

BLAST of FC869142 vs. ExPASy Swiss-Prot
Match: ATK3_ARATH (Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.819e-24
Identity = 51/98 (52.04%), Postives = 67/98 (68.37%), Query Frame = 3

Query:  231 MVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIE 524
            ++DL GSER+ K+G+TG  L E +AIN SLS+L DVI AL +K  HVP+RNSKLT +L+  LG  +K LM V+ +P     GE++CSL FA R    E
Sbjct:  637 LIDLAGSERLSKSGSTGDRLKETQAINKSLSSLGDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDAKTLMFVNIAPESSSTGESLCSLRFAARVNACE 734

HSP 2 Score: 30.8018 bits (68), Expect = 3.819e-24
Identity = 16/48 (33.33%), Postives = 23/48 (47.92%), Query Frame = 1

Query:    1 DAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSH 144
            DA G   +  LT + +    +  +  +   R RS   T +NE SSRSH
Sbjct:  566 DASGNTHVAELTILDVKSSREVSFLLDHAARNRSVGKTQMNEQSSRSH 613

The following BLAST results are available for this feature:

BLAST of FC869142 vs. ExPASy Swiss-Prot

BLAST of FC869142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189


Match Name	E-value	Identity	Description
KIF3B_HUMAN	1.332e-24	48.74	Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3...	[more]
KRP95_STRPU	1.332e-24	49.58	Kinesin-II 95 kDa subunit OS=Strongylocentrotus pu...	[more]
KIF27_RAT	2.234e-24	49.11	Kinesin-like protein KIF27 OS=Rattus norvegicus GN...	[more]
KINH_NEUCR	2.248e-24	48.65	Kinesin heavy chain OS=Neurospora crassa GN=kin PE...	[more]
ATK2_ARATH	2.256e-24	53.06	Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=...	[more]
KLP3_SCHPO	2.267e-24	46.09	Kinesin-like protein 3 OS=Schizosaccharomyces pomb...	[more]
ATK1_ARATH	2.933e-24	56.12	Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=...	[more]
ATK4_ARATH	3.472e-24	50.00	Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=...	[more]
KIF27_MOUSE	3.783e-24	48.21	Kinesin-like protein KIF27 OS=Mus musculus GN=Kif2...	[more]
ATK3_ARATH	3.819e-24	52.04	Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=...	[more]

Pages

Properties


Property Name	Value
Genbank description	C31009A02EF AbioticL1 Citrus clementina cDNA clone C31009A02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC869142 ID=FC869142; Name=FC869142; organism=Citrus clementina; type=EST; length=578bp
GATGCGAAGGGCACAGTGGAAATCGAGGGCCTGACAGAGGTGCAAATCCC
AGATTTTACAAAGGCCCGATGGTGGTACAATAAAGGGAGACGGGTTAGAT
CAACTTCATGGACTAATGTGAATGAGGCATCCAGCAGGTCACACTGTTTC
ATATATCTAGCTTAATGAGGATCACCATTTTCCGACATGGGGATGCCTTG
GAAGCCAAAACAGAAGTAAGCAAACTTTGGATGGTTGATCTTGGAGGCAG
CGAGCGGGTACTGAAAACAGGAGCCACTGGGCAAACACTGGATGAGGGAA
GGGCCATTAATCTCTCCCTTTCTGCACTGGCTGATGTTATTGCAGCTCTG
AGAAGGAAGAGAGGCCATGTGCCTTACAGAAATAGCAAGCTAACTCAGAT
CCTCAGAGATTCCCTGGGTGATGGTTCAAAGGTTTTGATGCTTGTTCATG
CAAGCCCATGTGAAGAAGATGTTGGGGAGACAATTTGTTCTTTGAGTTTT
GCCAAGCGAGCAAGGGGAATAGAGTCCAATAGGGAGCTATCAGAGGACTT
GAAGAAGCGAANGGAGATAAGAATGGCA