FC869144

Overview
NameFC869144
Unique NameFC869144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC869144 vs. ExPASy Swiss-Prot
Match: CSK2B_DANRE (Casein kinase II subunit beta OS=Danio rerio GN=csnk2b PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 3 
Query:  555 WISWFCNLRGNEFFCEVDDEYIQDDFYLCGVSSQAPYY 668
            WISWFC LRGNEFFCEVD++YIQD F L G++ Q P+Y
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHY 46
[Close]
BLAST of FC869144 vs. ExPASy Swiss-Prot
Match: CSK2B_CHICK (Casein kinase II subunit beta OS=Gallus gallus GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 3 
Query:  555 WISWFCNLRGNEFFCEVDDEYIQDDFYLCGVSSQAPYY 668
            WISWFC LRGNEFFCEVD++YIQD F L G++ Q P+Y
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHY 46
[Close]
BLAST of FC869144 vs. ExPASy Swiss-Prot
Match: CSK2B_BOVIN (Casein kinase II subunit beta OS=Bos taurus GN=CSNK2B PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 3 
Query:  555 WISWFCNLRGNEFFCEVDDEYIQDDFYLCGVSSQAPYY 668
            WISWFC LRGNEFFCEVD++YIQD F L G++ Q P+Y
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHY 46
[Close]
BLAST of FC869144 vs. ExPASy Swiss-Prot
Match: CSK2B_SPOFR (Casein kinase II subunit beta OS=Spodoptera frugiperda PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 3 
Query:  555 WISWFCNLRGNEFFCEVDDEYIQDDFYLCGVSSQAPYY 668
            WISWFC LRGNEFFCEVD++YI D F L G++ Q P+Y
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYINDKFNLTGLNEQVPHY 46
[Close]
BLAST of FC869144 vs. ExPASy Swiss-Prot
Match: CSK2B_CAEEL (Casein kinase II subunit beta OS=Caenorhabditis elegans GN=kin-10 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 3 
Query:  555 WISWFCNLRGNEFFCEVDDEYIQDDFYLCGVSSQAPYY 668
            WI+WFC LRGNEFFCEVD+EYIQD F L G++ Q P Y
Sbjct:    9 WITWFCGLRGNEFFCEVDEEYIQDRFNLTGLNEQVPKY 46
The following BLAST results are available for this feature:
BLAST of FC869144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CSK2B_DANRE2.056e-1171.05Casein kinase II subunit beta OS=Danio rerio GN=cs... [more]
CSK2B_CHICK2.056e-1171.05Casein kinase II subunit beta OS=Gallus gallus GN=... [more]
CSK2B_BOVIN2.056e-1171.05Casein kinase II subunit beta OS=Bos taurus GN=CSN... [more]
CSK2B_SPOFR7.813e-1168.42Casein kinase II subunit beta OS=Spodoptera frugip... [more]
CSK2B_CAEEL7.813e-1171.05Casein kinase II subunit beta OS=Caenorhabditis el... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31009A04EF AbioticL1 Citrus clementina cDNA clone C31009A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869144 ID=FC869144; Name=FC869144; organism=Citrus clementina; type=EST; length=674bp
AGAGACCTAAGATCCGCTCGTGTGTGTTTAGTTTTTACCTTGGTTTTCTC
CGTCTCTGAACTCAAATCAAATCTAGGGTTTCCCGTCTCCATCCCAAAAA
AAGTGTCCTTTAAAGTAAAAAGTCCTTAATCTACGTAATCCATATACAGG
TTTTTCTATGTGAAGTATCAAAGCTGGAATCTTTGGGAGTTTAGGGTTCT
GAAATTGGAAAAGGAAAAAAGAAAATAAAGTAAAAAAGAATTGGGGCAGC
TATGTATAGAGATCGAGGAGGAGGGGCGTCGAAGTCGGAGATAGTGGCAG
GACCGTTGGATCGAAAGCGCATAAACGATGCGCTGGACAAGCATTTAGAG
AAGACCTCCCCTTCTACTTCGAGGGCCTTGAGTTCTAAAGACAAGGAGAG
GTTGTCCGTACCTTCCACTTCTGCCGGTAAATCGCAGCTCGATCACCGCG
ATTCTCGCTCCGCCTCTCTCCCCAAGAACAAATGCTCTGATGAGGAATCT
GAAACAGACAGTGAAGAATCTGATGTTAGCGGTTCTGATGGAGATGACAC
ATCTTGGATCTCATGGTTTTGCAATTTGCGAGGAAATGAATTTTTCTGTG
AAGTTGATGATGAGTACATCCAGGATGATTTTTATCTTTGTGGAGTGAGC
AGTCAAGCTCCATACTATGATTAT
back to top