FC869145

Overview
NameFC869145
Unique NameFC869145
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig65 contig Ccv1_Contig65:60..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RK5_CHLAT (50S ribosomal protein L5, chloroplastic OS=Chlorokybus atmophyticus GN=rpl5 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.328e-50
Identity = 89/148 (60.14%), Postives = 120/148 (81.08%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR 624
            RLK  YLEK  P LRE F Y N+HQ+P+IEKI++NCG+G+A+QNAK L++AM +L++I GQ+ V TRA+ +IA FK+R+  P+GI++TLRGN MY+FLDRLINL LPR +DFQGV+   FDGHGNY++G+KEQ +FPEI +D + + R
Sbjct:    4 RLKAIYLEKAAPRLREMFEYKNVHQIPRIEKIIINCGLGEASQNAKSLDSAMKELSIIAGQKGVITRAKKAIANFKLRKDMPVGISITLRGNSMYAFLDRLINLALPRIKDFQGVSSKGFDGHGNYNLGLKEQLMFPEINFDQIDQIR 151          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_ACAM1 (50S ribosomal protein L5 OS=Acaryochloris marina (strain MBIC 11017) GN=rplE PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.040e-50
Identity = 94/167 (56.29%), Postives = 129/167 (77.25%), Query Frame = 1
Query:  175 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEAR 672
            T RLKT YL+  VP L+E+F Y N H++PK+ K+ VN G+G+A+QNAK LE ++ +LA+ITGQRPV TRA+ +IA FKIR+G P+G+ VTLRG  MY+FLDRL+NL LPR RDF+GV+P SFDG GNY++G++EQ +FPE+ YD++ + R   +  +   KTD+E R
Sbjct:    2 TVRLKTLYLDTAVPKLQEQFKYKNAHEIPKVTKVSVNRGLGEASQNAKALERSLEELAVITGQRPVVTRAKKAIAGFKIRQGMPVGVMVTLRGERMYAFLDRLVNLALPRIRDFRGVSPKSFDGRGNYTLGLREQLIFPEVDYDSIDQIRGMDISIITTAKTDEEGR 168          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RK5_MESVI (50S ribosomal protein L5, chloroplastic OS=Mesostigma viride GN=rpl5 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.040e-50
Identity = 98/163 (60.12%), Postives = 126/163 (77.30%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKE 666
            RLKT YLE  V  L+E F Y N HQ+P+I+KIV+NCG+ +A+QN+K LE+AM +L++I GQ+ V TRA+ +IA FKIREG P+GI +TLRG+ MY+FLDRLINL LPR RDFQGV+  SFDGHGNY++G+KEQ +FPEI YD + K R   +  + N KTD E
Sbjct:    4 RLKTLYLESAVLKLQETFGYKNPHQIPRIKKIVINCGLSEASQNSKSLESAMKELSIIAGQKGVITRAKKAIAGFKIREGLPIGICITLRGDSMYAFLDRLINLALPRIRDFQGVSSKSFDGHGNYNLGLKEQLMFPEIDYDQIDKIRGMDICIVTNAKTDSE 166          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_NOSP7 (50S ribosomal protein L5 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplE PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.971e-50
Identity = 94/167 (56.29%), Postives = 128/167 (76.65%), Query Frame = 1
Query:  175 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEAR 672
            T RLK+ Y E IVP L  +F YTN+HQVPK+ K+ +N G+G+AAQNAK LEA++N++AL+TGQ+PV TRA+ +IA FKIR+G P+GI VTLR   MY+F DRL++L LPR RDF+GV+P SFDG GNY++GV+EQ +FPE+ YD++ + R   +  +   K D+E R
Sbjct:    3 TTRLKSLYQETIVPKLINQFQYTNVHQVPKLVKVTINRGLGEAAQNAKSLEASINEIALVTGQKPVVTRAKKAIAGFKIRQGMPVGIMVTLRAERMYAFFDRLVSLSLPRIRDFRGVSPKSFDGRGNYTLGVREQLIFPEVEYDSVDQVRGMDISIITTAKNDEEGR 169          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_THEPX (50S ribosomal protein L5 OS=Thermoanaerobacter sp. (strain X514) GN=rplE PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.186e-50
Identity = 93/165 (56.36%), Postives = 125/165 (75.76%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEAR 672
            RL+  Y +++VP L E F Y NI QVPK+EK+V+N G+G+A +N K LEAA++DL +I GQ+PV TRA+ SIA FKIR+G P+G+ VTLRG  MY F+D+L N+ LPR RDF+GV+PNSFDG GNY++G+KEQ +FPEI YD + K R   +  +   KTD+EA+
Sbjct:    3 RLREKYEKEVVPALMERFGYKNIMQVPKVEKVVINIGVGEAKENPKALEAAVDDLTMIAGQKPVITRAKRSIANFKIRKGMPIGVKVTLRGERMYEFMDKLFNIALPRVRDFKGVSPNSFDGRGNYALGIKEQLIFPEIDYDKIDKIRGMDIIIVTTAKTDEEAK 167          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_THEP3 (50S ribosomal protein L5 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplE PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.186e-50
Identity = 93/165 (56.36%), Postives = 125/165 (75.76%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEAR 672
            RL+  Y +++VP L E F Y NI QVPK+EK+V+N G+G+A +N K LEAA++DL +I GQ+PV TRA+ SIA FKIR+G P+G+ VTLRG  MY F+D+L N+ LPR RDF+GV+PNSFDG GNY++G+KEQ +FPEI YD + K R   +  +   KTD+EA+
Sbjct:    3 RLREKYEKEVVPALMERFGYKNIMQVPKVEKVVINIGVGEAKENPKALEAAVDDLTMIAGQKPVITRAKRSIANFKIRKGMPIGVKVTLRGERMYEFMDKLFNIALPRVRDFKGVSPNSFDGRGNYALGIKEQLIFPEIDYDKIDKIRGMDIIIVTTAKTDEEAK 167          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_THETN (50S ribosomal protein L5 OS=Thermoanaerobacter tengcongensis GN=rplE PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.846e-50
Identity = 94/165 (56.97%), Postives = 125/165 (75.76%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEAR 672
            RL+  Y +++VP L E F Y NI QVPK+EK+V+N G+G+A +N K LEAAMNDL +I+GQ+PV TRA+ SI+ FKIR+G P+G+ VTLR   MY FLD+L N+ LPR RDF+GV+PNSFDG GNY++GV+EQ +FPEI YD + K R   +  +   KTD+EA+
Sbjct:    3 RLREKYEKEVVPALMERFGYKNIMQVPKLEKVVINIGVGEAKENPKALEAAMNDLMMISGQKPVITRAKKSISNFKIRKGMPIGVKVTLRRERMYEFLDKLFNIALPRVRDFKGVSPNSFDGRGNYALGVREQLIFPEIDYDKIDKVRGMDIIIVTTAKTDEEAK 167          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_DESAP (50S ribosomal protein L5 OS=Desulforudis audaxviator (strain MP104C) GN=rplE PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.574e-49
Identity = 90/166 (54.22%), Postives = 129/166 (77.71%), Query Frame = 1
Query:  184 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARDF 678
            LK  Y+E+++P + ++F Y N+ +VP++EK+V+N G+G+A QNAK ++AAM DL  ITGQ+PV TRA+ S+A FKIREG  +G+ VTLRG+ MY F+DRLIN+ LPR RDF+GV+P +FDG GNY++G+KEQ +FPEI YD + K R   +  + + K+D+EAR+F
Sbjct:    4 LKQKYIEEVIPAMMDKFKYRNVMEVPRLEKVVINIGMGEAVQNAKAIDAAMQDLRTITGQQPVVTRAKKSVAAFKIREGMRIGLKVTLRGSRMYDFVDRLINVALPRVRDFRGVSPKAFDGRGNYTLGLKEQLIFPEIDYDKIDKVRGMDITFVTSAKSDEEAREF 169          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RK5_ZYGCR (50S ribosomal protein L5, chloroplastic OS=Zygnema circumcarinatum GN=rpl5 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.362e-49
Identity = 91/150 (60.67%), Postives = 118/150 (78.67%), Query Frame = 1
Query:  175 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR 624
            T RLKT YL  +VP LR++  Y NIHQVP++ KIV+NCG+G+A+QNAK LE+ + DL+ ITGQ+P+ TRA+ SIA F+IR    +G+ VTLR + MY+FLDRLI+L LPR RDFQG+N NSFDGHGN+ +G+KEQ +FPEI YD + K R
Sbjct:    2 TQRLKTFYLNTVVPKLRKQLEYQNIHQVPQVTKIVINCGLGEASQNAKSLESTLRDLSFITGQKPIVTRAKKSIAGFQIRAQMSVGVCVTLRADAMYAFLDRLIHLALPRIRDFQGLNSNSFDGHGNFHLGLKEQLMFPEIDYDKIEKLR 151          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_THEEB (50S ribosomal protein L5 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplE PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.734e-49
Identity = 95/165 (57.58%), Postives = 124/165 (75.15%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEAR 672
            RLK  Y + +VP L ++F Y NIHQVPKI K+ VN G+G+AAQNAK LEA + ++A ITGQ+PV TRA+ +IA FKIR+G P+G+AVTLR   MY+FLDRLINL LPR RDF+GVNP SFDG GNY++G++EQ +FPE+ YD + + R   +  +    TD+E R
Sbjct:    4 RLKDHYNKTVVPQLMQQFQYKNIHQVPKIVKVTVNRGLGEAAQNAKALEATLAEIATITGQKPVVTRAKKAIAGFKIRKGMPVGVAVTLRSERMYAFLDRLINLALPRIRDFRGVNPKSFDGRGNYTLGLREQLIFPEVNYDDIDQIRGMDVSIITTANTDEEGR 168          
The following BLAST results are available for this feature:
BLAST of FC869145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK5_CHLAT2.328e-5060.1450S ribosomal protein L5, chloroplastic OS=Chlorok... [more]
RL5_ACAM13.040e-5056.2950S ribosomal protein L5 OS=Acaryochloris marina (... [more]
RK5_MESVI3.040e-5060.1250S ribosomal protein L5, chloroplastic OS=Mesosti... [more]
RL5_NOSP73.971e-5056.2950S ribosomal protein L5 OS=Nostoc punctiforme (st... [more]
RL5_THEPX5.186e-5056.3650S ribosomal protein L5 OS=Thermoanaerobacter sp.... [more]
RL5_THEP35.186e-5056.3650S ribosomal protein L5 OS=Thermoanaerobacter pse... [more]
RL5_THETN8.846e-5056.9750S ribosomal protein L5 OS=Thermoanaerobacter ten... [more]
RL5_DESAP2.574e-4954.2250S ribosomal protein L5 OS=Desulforudis audaxviat... [more]
RK5_ZYGCR3.362e-4960.6750S ribosomal protein L5, chloroplastic OS=Zygnema... [more]
RL5_THEEB5.734e-4957.5850S ribosomal protein L5 OS=Thermosynechococcus el... [more]

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Properties
Property NameValue
Genbank descriptionC31009A05EF AbioticL1 Citrus clementina cDNA clone C31009A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869145 ID=FC869145; Name=FC869145; organism=Citrus clementina; type=EST; length=685bp
TGTCCTTCGCTGTTACACTCCTCTGCGTCGTCGTTTCACGGCCGATTCCC
CGCTCTCTCATCTTCATCATATGTACGGCCCACATATCCAAACCCTATAA
ATGTGAATGGGGTGGTCTCGGTGAAGGCGGCGGCTGGAGGCATTGTGTTG
GTGGAGAAATCCGAAGCAGAGAAGACCGGACGGCTCAAAACCACGTATCT
CGAAAAGATTGTTCCTTTGCTCAGAGAAGAGTTTTCCTATACTAACATTC
ACCAGGTTCCGAAGATTGAGAAGATTGTTGTGAATTGTGGTATTGGAGAT
GCTGCTCAGAATGCAAAAGGCCTGGAGGCGGCAATGAATGACTTGGCACT
CATTACAGGTCAGAGACCTGTAAAGACGCGAGCAAGGAATTCCATTGCCA
CCTTCAAGATCAGGGAAGGCGAACCACTTGGAATTGCTGTCACACTCAGA
GGAAATATGATGTACTCATTTCTAGACCGTCTTATTAATTTGGGGCTTCC
TAGAACAAGGGATTTCCAAGGTGTGAATCCCAATAGCTTTGATGGACATG
GGAATTACAGCATTGGTGTTAAAGAACAGAGTGTTTTCCCGGAGATCAGG
TATGATGCTCTTGGCAAGCCCAGGGAATAGATGTTTGCATTACACAACCG
CAAAACTGATAAAGAAGCCAGAGACTTTTGGCTCT
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