FC869145

Overview
NameFC869145
Unique NameFC869145
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_PROM9 (50S ribosomal protein L5 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplE PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.945e-45
Identity = 87/147 (59.18%), Postives = 111/147 (75.51%), Query Frame = 1
Query:  184 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR 624
            LK  Y E I P L ++    NIHQVPK+ K+ VN G+G+AA N+K LEA++N++A ITGQ+ + TRA+ +IA FKIREG P+G  VTLRG+ MYSFL+R INL LPR RDF+GVNP SFDG GNY++GVKEQ +FPEI +D +   R
Sbjct:    3 LKNRYKESIRPKLLKDLGLKNIHQVPKVVKVNVNRGLGEAASNSKSLEASLNEMATITGQKALVTRAKKAIAGFKIREGMPIGCTVTLRGDRMYSFLERFINLALPRIRDFRGVNPKSFDGRGNYTVGVKEQLIFPEISFDKIDSIR 149          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_PROM3 (50S ribosomal protein L5 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplE PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.945e-45
Identity = 87/143 (60.84%), Postives = 113/143 (79.02%), Query Frame = 1
Query:  184 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDAL 612
            LK  Y E I P L ++ S +NIH+VPK+ KI VN G+G+AAQNAK LEA++ +LA ITGQ+ V TRA+ +IA FKIR+G P+G AVTLRG  MY+FL+RLINL LPR RDF+GV+P SFDG GNY++GV+EQ +FPE+ +D +
Sbjct:    3 LKQRYRETIQPKLLKDLSLSNIHEVPKVLKITVNRGLGEAAQNAKSLEASITELATITGQKVVVTRAKKAIAGFKIRQGMPIGCAVTLRGERMYAFLERLINLALPRIRDFRGVSPKSFDGRGNYTLGVREQLIFPEVSFDKI 145          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_PROM0 (50S ribosomal protein L5 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplE PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.945e-45
Identity = 87/147 (59.18%), Postives = 111/147 (75.51%), Query Frame = 1
Query:  184 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR 624
            LK  Y E I P L ++    NIHQVPK+ K+ VN G+G+AA N+K LEA++N++A ITGQ+ + TRA+ +IA FKIREG P+G  VTLRG+ MYSFL+R INL LPR RDF+GVNP SFDG GNY++GVKEQ +FPEI +D +   R
Sbjct:    3 LKNRYKESIRPKLLKDLGLKNIHQVPKVVKVNVNRGLGEAASNSKALEASLNEMATITGQKALVTRAKKAIAGFKIREGMPIGCTVTLRGDRMYSFLERFINLALPRIRDFRGVNPKSFDGRGNYTVGVKEQLIFPEISFDKIDSIR 149          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_CLOTE (50S ribosomal protein L5 OS=Clostridium tetani GN=rplE PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.945e-45
Identity = 88/166 (53.01%), Postives = 123/166 (74.10%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            RL+  Y ++++P L E+F Y NI +VPK+EKIV+N G+G+A +N K LE+A++DL++I GQ+P+ T+A+ S+A FKIRE  P+G  VTLR   MY F D+L+N+ LPR RDF+GV+  SFDG GNYS+GVKEQ +FPEI YD + K R   +  +   KTD+EAR+
Sbjct:    4 RLQEKYEKEVIPALIEKFGYKNIMEVPKLEKIVINMGVGEAKENQKMLESAVSDLSIIAGQKPIVTKAKKSVANFKIRENMPIGCKVTLRKVKMYEFADKLMNVALPRVRDFRGVSSKSFDGRGNYSLGVKEQLMFPEIEYDKVDKVRGMDIIFVTTAKTDEEARE 169          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_GEOUR (50S ribosomal protein L5 OS=Geobacter uraniireducens (strain Rf4) GN=rplE PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.846e-45
Identity = 82/146 (56.16%), Postives = 118/146 (80.82%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGK 618
            RL   Y +++VP L ++F+Y N+ +VPK+EKIVVN G+G+A QN K L++A++++A+ITGQ+P+ T+A+ SIA FK+R+G P+G AVTLR + MY FLDRL+N+ LPR RDF+G++  +FDG+GNYS+GVKEQ +FPEI YD + K
Sbjct:    3 RLNELYNKEMVPQLMKDFNYRNVMEVPKLEKIVVNMGLGEAIQNVKILDSAVDEMAVITGQKPIITKAKKSIAGFKLRQGMPIGCAVTLRKDKMYEFLDRLVNVSLPRVRDFKGISGKAFDGNGNYSLGVKEQLIFPEINYDKIDK 148          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_DEIGD (50S ribosomal protein L5 OS=Deinococcus geothermalis (strain DSM 11300) GN=rplE PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.846e-45
Identity = 87/164 (53.05%), Postives = 123/164 (75.00%), Query Frame = 1
Query:  184 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEAR 672
            LK  Y E++ P L ++F Y++I  VP+IEKIV+N G+G +  ++K ++ A  +LALIT Q+PV T+A+ SI+ FK+R+G P+G+ VTLRG  MY FL++LIN+GLPR RDF+G+NPNSFDG GNY++G+KEQ +FPEI YD + K R   +  +   KTD+EAR
Sbjct:    4 LKAKYNEQVRPALMQQFGYSSIMAVPRIEKIVINEGLGSSKDDSKAIDKAAKELALITLQKPVITKAKKSISNFKLRQGMPVGVKVTLRGERMYVFLEKLINIGLPRIRDFRGINPNSFDGRGNYNLGIKEQLIFPEITYDMVDKVRGMDITIVTTAKTDEEAR 167          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_ALKMQ (50S ribosomal protein L5 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplE PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.846e-45
Identity = 82/166 (49.40%), Postives = 118/166 (71.08%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            R+K  Y  ++ P + E+F Y ++ Q+P++EKI++N G+G A +N K LE A+ +L +I GQ+P+ T+A+ S+A FK+REG  +G   TLRG  MY F DRLIN+ LPR RDF+GVNPNSFDG GNY++GVKEQ +FPEI YD + K R   +  +    +D+E+R+
Sbjct:    3 RIKDKYRNEVAPAMMEKFGYKSVMQIPRLEKIIINMGLGQAKENQKELEIAVKELGIIAGQKPITTKAKKSVANFKVREGMAVGAKTTLRGEKMYEFADRLINIALPRVRDFRGVNPNSFDGRGNYALGVKEQLIFPEIEYDKVDKVRGMDIILVTTANSDEESRE 168          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_LEPIN (50S ribosomal protein L5 OS=Leptospira interrogans GN=rplE PE=3 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.023e-45
Identity = 86/144 (59.72%), Postives = 114/144 (79.17%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDAL 612
            RL+T Y ++IVP L ++F +++I QVP++EKIV+N G+G+A  N K LEAA+ +LALITGQRPVKT+A+ SIA FKIREG  LG  VTLRG+ MY FLDRL+N+ LPR RDF+GV+   FDG GNY++ +KEQ +FPEI+ D +
Sbjct:    4 RLRTKYKKEIVPELNKKFKFSSIMQVPRLEKIVLNVGMGEAHTNPKALEAAVEELALITGQRPVKTKAKKSIAGFKIREGMSLGCMVTLRGDYMYEFLDRLVNVALPRVRDFKGVSEKGFDGRGNYNMSIKEQIIFPEIKVDKI 147          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_LEPIC (50S ribosomal protein L5 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=rplE PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.023e-45
Identity = 86/144 (59.72%), Postives = 114/144 (79.17%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDAL 612
            RL+T Y ++IVP L ++F +++I QVP++EKIV+N G+G+A  N K LEAA+ +LALITGQRPVKT+A+ SIA FKIREG  LG  VTLRG+ MY FLDRL+N+ LPR RDF+GV+   FDG GNY++ +KEQ +FPEI+ D +
Sbjct:    4 RLRTKYKKEIVPELNKKFKFSSIMQVPRLEKIVLNVGMGEAHTNPKALEAAVEELALITGQRPVKTKAKKSIAGFKIREGMSLGCMVTLRGDYMYEFLDRLVNVALPRVRDFKGVSEKGFDGRGNYNMSIKEQIIFPEIKVDKI 147          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_DESAA (50S ribosomal protein L5 OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rplE PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.023e-45
Identity = 82/164 (50.00%), Postives = 121/164 (73.78%), Query Frame = 1
Query:  184 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPRE*MFAL-HNRKTDKEAR 672
            L+T YLE + P L+EEF Y+N  Q+P++ K+V+N G+G+A QN K LE A+++L LI+GQ+PV T+A+ SIA FK+REG P+G+  TLR + MY FL++L+N+ LPR RDF+G++P +FDG GNY++G++EQ +FPEI YD + K +     +    K D+E R
Sbjct:    4 LRTEYLENVAPKLQEEFGYSNAMQIPRLSKVVLNMGLGEAIQNNKILEGAVDELTLISGQKPVVTKAKKSIAAFKLREGMPIGVTATLRRDRMYDFLNKLVNVTLPRVRDFRGISPKAFDGRGNYTLGIREQIIFPEINYDRIDKVKGLNITIVTTAKNDEEGR 167          
The following BLAST results are available for this feature:
BLAST of FC869145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL5_PROM92.945e-4559.1850S ribosomal protein L5 OS=Prochlorococcus marinu... [more]
RL5_PROM32.945e-4560.8450S ribosomal protein L5 OS=Prochlorococcus marinu... [more]
RL5_PROM02.945e-4559.1850S ribosomal protein L5 OS=Prochlorococcus marinu... [more]
RL5_CLOTE2.945e-4553.0150S ribosomal protein L5 OS=Clostridium tetani GN=... [more]
RL5_GEOUR3.846e-4556.1650S ribosomal protein L5 OS=Geobacter uraniireduce... [more]
RL5_DEIGD3.846e-4553.0550S ribosomal protein L5 OS=Deinococcus geothermal... [more]
RL5_ALKMQ3.846e-4549.4050S ribosomal protein L5 OS=Alkaliphilus metallire... [more]
RL5_LEPIN5.023e-4559.7250S ribosomal protein L5 OS=Leptospira interrogans... [more]
RL5_LEPIC5.023e-4559.7250S ribosomal protein L5 OS=Leptospira interrogans... [more]
RL5_DESAA5.023e-4550.0050S ribosomal protein L5 OS=Desulfatibacillum alke... [more]

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Properties
Property NameValue
Genbank descriptionC31009A05EF AbioticL1 Citrus clementina cDNA clone C31009A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869145 ID=FC869145; Name=FC869145; organism=Citrus clementina; type=EST; length=685bp
TGTCCTTCGCTGTTACACTCCTCTGCGTCGTCGTTTCACGGCCGATTCCC
CGCTCTCTCATCTTCATCATATGTACGGCCCACATATCCAAACCCTATAA
ATGTGAATGGGGTGGTCTCGGTGAAGGCGGCGGCTGGAGGCATTGTGTTG
GTGGAGAAATCCGAAGCAGAGAAGACCGGACGGCTCAAAACCACGTATCT
CGAAAAGATTGTTCCTTTGCTCAGAGAAGAGTTTTCCTATACTAACATTC
ACCAGGTTCCGAAGATTGAGAAGATTGTTGTGAATTGTGGTATTGGAGAT
GCTGCTCAGAATGCAAAAGGCCTGGAGGCGGCAATGAATGACTTGGCACT
CATTACAGGTCAGAGACCTGTAAAGACGCGAGCAAGGAATTCCATTGCCA
CCTTCAAGATCAGGGAAGGCGAACCACTTGGAATTGCTGTCACACTCAGA
GGAAATATGATGTACTCATTTCTAGACCGTCTTATTAATTTGGGGCTTCC
TAGAACAAGGGATTTCCAAGGTGTGAATCCCAATAGCTTTGATGGACATG
GGAATTACAGCATTGGTGTTAAAGAACAGAGTGTTTTCCCGGAGATCAGG
TATGATGCTCTTGGCAAGCCCAGGGAATAGATGTTTGCATTACACAACCG
CAAAACTGATAAAGAAGCCAGAGACTTTTGGCTCT
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