FC869145

Overview
NameFC869145
Unique NameFC869145
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig65 contig Ccv1_Contig65:60..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_SYNP2 (50S ribosomal protein L5 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplE PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.489e-49
Identity = 93/165 (56.36%), Postives = 127/165 (76.97%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEAR 672
            RLKT Y + IVP L E+F Y+N+H+VPK+ KI VN G+G+A+ NAK +E+++ +L+ ITGQRPV TRA+ +IA FKIREG P+G+ VTLR   MYSFLDRLI+L LPR RDF+G++P SFDG GNYS+G++EQ +FPEI YD++ + R   +  +   +TD+E R
Sbjct:    4 RLKTLYQDSIVPKLTEQFGYSNVHEVPKLVKISVNRGLGEASSNAKAMESSIKELSTITGQRPVITRAKKAIAGFKIREGMPVGVMVTLRSEKMYSFLDRLISLALPRIRDFRGISPKSFDGRGNYSLGIREQLIFPEIDYDSIDQIRGMDISIITTARTDEEGR 168          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_ANOFW (50S ribosomal protein L5 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rplE PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.489e-49
Identity = 94/166 (56.63%), Postives = 126/166 (75.90%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            RLK  YL+++VP L  +F+Y ++ QVPKIEKIV+N G+GDA QNAK L+ A+ +LALI+GQ+PV TRA+ SIA F++REG P+G  VTLRG  MY F D+L+++ LPR RDF+GV+  SFDG GNY++GVKEQ +FPEI YD + K R   +  +   KTD+EAR+
Sbjct:    3 RLKEKYLKEVVPALMSKFNYKSVMQVPKIEKIVINMGVGDAVQNAKALDNAVEELALISGQKPVVTRAKKSIAGFRLREGMPIGAKVTLRGERMYEFFDKLVSVSLPRVRDFRGVSKKSFDGRGNYTLGVKEQLIFPEIDYDKVNKVRGMDIVIVTTAKTDEEARE 168          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_ALKOO (50S ribosomal protein L5 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplE PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.489e-49
Identity = 90/166 (54.22%), Postives = 123/166 (74.10%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            RLK  Y  ++ P + E+F Y ++ ++PKIEKIVVN G+GD+  N KGLEAA+ +L +ITGQ+PV TRA+ S+A FK+R+G P+G  VTLRG  MY F DRL+N+ LPR RDF+GVNPN+FDG GNY++G+KEQ +FPEI YD + K     +  +   KTD+E+R+
Sbjct:    3 RLKDMYKSEVAPAMMEKFGYKSVMEIPKIEKIVVNMGLGDSKDNPKGLEAAVKELGIITGQKPVVTRAKKSVANFKLRQGMPIGAKVTLRGEKMYEFADRLLNIALPRVRDFRGVNPNAFDGRGNYALGIKEQLIFPEIEYDKVEKLHGMDIIFVTTAKTDEESRE 168          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RK5_CHAGL (50S ribosomal protein L5, chloroplastic OS=Chaetosphaeridium globosum GN=rpl5 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.781e-49
Identity = 87/148 (58.78%), Postives = 119/148 (80.41%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR 624
            RLK+ YL  ++P L EE  Y N+HQ+P+++KIV+NCGIG+A+QNAK LE  + DL++I GQRP+  RA+ +IA+F++R+  P+G++VTLRG+ MY+FLDRLINL LPR RDFQG+N  SFDGHGN+ +G+KEQ +FPEI YD + K R
Sbjct:    4 RLKSIYLNNVIPKLNEEAKYKNVHQIPRLKKIVINCGIGEASQNAKTLEYTIRDLSIIAGQRPLVKRAKKAIASFQLRKKMPVGVSVTLRGDAMYAFLDRLINLALPRIRDFQGLNRKSFDGHGNFHLGLKEQLMFPEIDYDKIDKLR 151          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_TRIEI (50S ribosomal protein L5 OS=Trichodesmium erythraeum (strain IMS101) GN=rplE PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.668e-48
Identity = 92/164 (56.10%), Postives = 124/164 (75.61%), Query Frame = 1
Query:  184 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEAR 672
            LK  Y +KIVP L ++F Y NIHQVPK+ K+ +N G+G+A+QNAK L++++ ++A ITGQ+PV TRA+ +IA FKIR+G P+G+ VTLR   MY F++RLINL LPR RDF+G+NP SFDG GNYS+GVKEQ +FPEI YD + + R   +  +   KTD+E R
Sbjct:    5 LKKYYYKKIVPKLIDQFKYKNIHQVPKLVKVTINRGLGEASQNAKALDSSIKEIATITGQKPVVTRAKKAIAGFKIRQGMPVGVMVTLRSQRMYEFIERLINLALPRIRDFRGINPKSFDGRGNYSLGVKEQLIFPEIEYDKIDQIRGMDISIITTAKTDEEGR 168          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_SYNJA (50S ribosomal protein L5 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplE PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.668e-48
Identity = 93/165 (56.36%), Postives = 129/165 (78.18%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPRE*MFAL-HNRKTDKEAR 672
            RL+  Y   IVP L++E  YTNIHQVP++EKIV+N G+GDA+QNAK LE+++ +++ ITGQRPV TRA+ +IA+FKIR+G P+G+ VTLR   MY+FLDRLIN+ LPR RDF+GV+P SFDG GNY++G++EQ +FPEI YD++ + R    ++    +TD+E R
Sbjct:    4 RLQILYNTVIVPKLQKELGYTNIHQVPRLEKIVINRGLGDASQNAKALESSIAEISAITGQRPVITRAKKAIASFKIRKGMPVGLMVTLRRERMYAFLDRLINIALPRIRDFRGVSPKSFDGRGNYTLGIREQLIFPEINYDSVDQIRGMDISIVTTAETDEEGR 168          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_CYAP8 (50S ribosomal protein L5 OS=Cyanothece sp. (strain PCC 8801) GN=rplE PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.717e-48
Identity = 93/165 (56.36%), Postives = 126/165 (76.36%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEAR 672
            RLK  Y + IVP L E+FSY N H+VPK+ KI VN G+G+A+QNAK LE+++N+L+ ITGQ+PV TRA+ +IA FKIR+G P+G+ VTLR + MY+FLDRLINL LPR RDF+G++  SFDG GNYS+G++EQ +FPEI YD + + R   +  +   +TD+E R
Sbjct:    4 RLKQVYQDTIVPKLTEQFSYKNPHEVPKVVKITVNRGLGEASQNAKALESSINELSTITGQKPVVTRAKKAIAGFKIRQGMPVGVMVTLRSDRMYAFLDRLINLALPRIRDFRGISAKSFDGRGNYSLGIREQLIFPEIDYDTIDQIRGMDVSIITTAQTDEEGR 168          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_SYNJB (50S ribosomal protein L5 OS=Synechococcus sp. GN=rplE PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.854e-48
Identity = 92/165 (55.76%), Postives = 129/165 (78.18%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPRE*MFAL-HNRKTDKEAR 672
            RL+  Y   IVP L++E  YTNIHQVP++EKIV+N G+G+A+QNAK LE+++ +++ ITGQRPV TRA+ +IA+FKIR+G P+G+ VTLR   MY+FLDRLIN+ LPR RDF+GV+P +FDG GNY++G++EQ +FPEI YD++ + R    ++    KTD+E R
Sbjct:    4 RLQILYNTVIVPKLQKELGYTNIHQVPRLEKIVINRGLGEASQNAKALESSIAEISAITGQRPVITRAKKAIASFKIRKGMPVGLMVTLRRERMYAFLDRLINVALPRIRDFRGVSPKAFDGRGNYTLGIREQLIFPEINYDSVDQLRGMDISIVTTAKTDEEGR 168          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_CHLAD (50S ribosomal protein L5 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplE PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.854e-48
Identity = 91/150 (60.67%), Postives = 119/150 (79.33%), Query Frame = 1
Query:  175 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR 624
            T RL+  Y +++VP L EEF + +I QVP++ KIVVN G+G+A QNAK +EAA+ND+A ITGQ+PV TRA+ S+A+FK+R G P+G+ VTLRG+ MY FLDRL +L LPR RDF+GV+ +SFDG GNYSIG+KEQ VFP+I YD + K R
Sbjct:    2 TVRLREKYYKEVVPALMEEFKFKSIMQVPRLVKIVVNVGVGEAVQNAKAIEAAVNDVAAITGQKPVVTRAKKSVASFKLRAGMPIGVMVTLRGDRMYDFLDRLCSLALPRIRDFRGVSRSSFDGRGNYSIGLKEQIVFPDIDYDKIDKIR 151          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_GEOKA (50S ribosomal protein L5 OS=Geobacillus kaustophilus GN=rplE PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.340e-48
Identity = 93/166 (56.02%), Postives = 123/166 (74.10%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            RLK  YL ++VP L  +F+Y +I QVPKIEKIV+N G+GDA QN K L++A+ +L LI GQRPV TRA+ SIA F++R+G P+G  VTLRG  MY FLD+LI++ LPR RDF+GV+  SFDG GNY++G+KEQ +FPEI YD + K R   +  +    TD+EAR+
Sbjct:    3 RLKEKYLNEVVPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIAGFRLRQGMPIGAKVTLRGERMYEFLDKLISVSLPRVRDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTANTDEEARE 168          
The following BLAST results are available for this feature:
BLAST of FC869145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL5_SYNP27.489e-4956.3650S ribosomal protein L5 OS=Synechococcus sp. (str... [more]
RL5_ANOFW7.489e-4956.6350S ribosomal protein L5 OS=Anoxybacillus flavithe... [more]
RL5_ALKOO7.489e-4954.2250S ribosomal protein L5 OS=Alkaliphilus oremlandi... [more]
RK5_CHAGL9.781e-4958.7850S ribosomal protein L5, chloroplastic OS=Chaetos... [more]
RL5_TRIEI1.668e-4856.1050S ribosomal protein L5 OS=Trichodesmium erythrae... [more]
RL5_SYNJA1.668e-4856.3650S ribosomal protein L5 OS=Synechococcus sp. (str... [more]
RL5_CYAP83.717e-4856.3650S ribosomal protein L5 OS=Cyanothece sp. (strain... [more]
RL5_SYNJB4.854e-4855.7650S ribosomal protein L5 OS=Synechococcus sp. GN=r... [more]
RL5_CHLAD4.854e-4860.6750S ribosomal protein L5 OS=Chloroflexus aggregans... [more]
RL5_GEOKA6.340e-4856.0250S ribosomal protein L5 OS=Geobacillus kaustophil... [more]

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Properties
Property NameValue
Genbank descriptionC31009A05EF AbioticL1 Citrus clementina cDNA clone C31009A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869145 ID=FC869145; Name=FC869145; organism=Citrus clementina; type=EST; length=685bp
TGTCCTTCGCTGTTACACTCCTCTGCGTCGTCGTTTCACGGCCGATTCCC
CGCTCTCTCATCTTCATCATATGTACGGCCCACATATCCAAACCCTATAA
ATGTGAATGGGGTGGTCTCGGTGAAGGCGGCGGCTGGAGGCATTGTGTTG
GTGGAGAAATCCGAAGCAGAGAAGACCGGACGGCTCAAAACCACGTATCT
CGAAAAGATTGTTCCTTTGCTCAGAGAAGAGTTTTCCTATACTAACATTC
ACCAGGTTCCGAAGATTGAGAAGATTGTTGTGAATTGTGGTATTGGAGAT
GCTGCTCAGAATGCAAAAGGCCTGGAGGCGGCAATGAATGACTTGGCACT
CATTACAGGTCAGAGACCTGTAAAGACGCGAGCAAGGAATTCCATTGCCA
CCTTCAAGATCAGGGAAGGCGAACCACTTGGAATTGCTGTCACACTCAGA
GGAAATATGATGTACTCATTTCTAGACCGTCTTATTAATTTGGGGCTTCC
TAGAACAAGGGATTTCCAAGGTGTGAATCCCAATAGCTTTGATGGACATG
GGAATTACAGCATTGGTGTTAAAGAACAGAGTGTTTTCCCGGAGATCAGG
TATGATGCTCTTGGCAAGCCCAGGGAATAGATGTTTGCATTACACAACCG
CAAAACTGATAAAGAAGCCAGAGACTTTTGGCTCT
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