FC869145

Overview
NameFC869145
Unique NameFC869145
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RK5_OLTVI (50S ribosomal protein L5, chloroplastic OS=Oltmannsiellopsis viridis GN=rpl5 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.367e-47
Identity = 89/148 (60.14%), Postives = 120/148 (81.08%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR 624
            R K  YL+ IVP L++EF Y N HQVP+I+KIV+N G+GDA+QNAK L++++N+L++I GQR V TR++ +IA FK+R+   +GI+VTLRG+ MYSFLDRLINL LPR RDFQG++P SFDG GNYS+G++EQ +FPEI YD + + R
Sbjct:    4 RFKELYLQTIVPKLKDEFGYKNSHQVPEIKKIVINRGLGDASQNAKILDSSLNELSIIAGQRGVVTRSKKAIAGFKLRDKMAVGISVTLRGDRMYSFLDRLINLALPRIRDFQGISPKSFDGCGNYSLGLEEQLMFPEIDYDKIDQVR 151          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_DICT6 (50S ribosomal protein L5 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplE PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.009e-47
Identity = 92/165 (55.76%), Postives = 121/165 (73.33%), Query Frame = 1
Query:  184 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            LK  Y++++VP + ++F Y N   VPKIEKIVVN G+ +A QN   +EAA  DLA+ITGQRP+  +AR SIA F +R+G P+G+ VTLRG  MY+FL +LINL LPR RDF GV+PNSFDG GNYS+G+KEQ VFPEI YD + + R   +  +   KTD+EA++
Sbjct:    4 LKQKYIQEVVPAMMKKFGYKNPMAVPKIEKIVVNIGVSEAVQNPGAIEAAARDLAIITGQRPIVRKARKSIANFHLRKGMPIGVKVTLRGERMYAFLYKLINLALPRVRDFSGVSPNSFDGRGNYSLGLKEQLVFPEIEYDKIDRIRGMDITIVTTAKTDEEAKE 168          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_CLOAB (50S ribosomal protein L5 OS=Clostridium acetobutylicum GN=rplE PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.009e-47
Identity = 88/166 (53.01%), Postives = 124/166 (74.70%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            RLK  Y ++++P L E+F Y NI +VPK+EKIV+N G+G+A +N K LE+A+ D+ LI+GQ+P+ TRA+ S+A FKIRE  P+G  VTLR N M+ F D+L+N+ LPR RDF+GV+  SFDG GNY++G+KEQ +FPE+ YD + K R   +  + N KTD+EAR+
Sbjct:    4 RLKEKYEKEVIPALMEKFQYKNIMEVPKLEKIVINMGVGEAKENQKVLESAVADMQLISGQKPILTRAKKSVANFKIRENMPIGCKVTLRKNKMFEFADKLMNVALPRVRDFRGVSSKSFDGRGNYALGIKEQLIFPEVEYDKIDKVRGMDVIFVTNAKTDEEARE 169          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RK5_RHDSA (50S ribosomal protein L5, chloroplastic OS=Rhodomonas salina GN=rpl5 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.009e-47
Identity = 87/147 (59.18%), Postives = 118/147 (80.27%), Query Frame = 1
Query:  184 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR 624
            LKT Y EK+VPLL E F Y NIH+VPKI KI +N G+G+A++N K LE+++ +LA+I+GQ+PV T+A+ S+A FKIR+G P+GIAVTLR  MMY+FL+RLI+L LPR RDF+G++   FDG GNY++G+KEQ +FPEI YD + + R
Sbjct:    5 LKTYYKEKVVPLLMETFEYKNIHEVPKITKITINRGLGEASKNNKALESSVQELAIISGQQPVITKAKKSVAGFKIRDGMPVGIAVTLRSKMMYAFLERLIHLSLPRIRDFKGISVQLFDGRGNYNLGLKEQLIFPEIEYDRIDQIR 151          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RK5_NEPOL (50S ribosomal protein L5, chloroplastic OS=Nephroselmis olivacea GN=rpl5 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.009e-47
Identity = 89/148 (60.14%), Postives = 116/148 (78.38%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR 624
            RLKT YL  +VP LR++F + NIH+VP I+KIV+N G+GDA+QNAK L+ ++ +L  I GQR V TR++ +IA FKIR+  P+GI+VTLRG  MY+FLDRLINL LPR RDFQG++  SFDG GNYS+G+ EQ +FPEI YDA+ + R
Sbjct:    4 RLKTFYLNSVVPKLRQQFHHRNIHEVPSIKKIVINRGLGDASQNAKLLDGSLQELTTIAGQRGVITRSKQAIAAFKIRQDMPVGISVTLRGERMYAFLDRLINLALPRIRDFQGMSTKSFDGQGNYSLGLNEQLMFPEINYDAIDQMR 151          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_ROSS1 (50S ribosomal protein L5 OS=Roseiflexus sp. (strain RS-1) GN=rplE PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.154e-47
Identity = 92/148 (62.16%), Postives = 115/148 (77.70%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR 624
            RLK  Y  ++VP L +EF Y ++ QVP+IEKIV+N G+G+A QN+K L+AA  DLA I GQ+PV TRAR SIA FK+R+G P+G+ VTLRG  M+SFLDRL+NL LPR RDF+GV+  SFDG GNYSIG++EQ VFPEI YD + K R
Sbjct:    4 RLKEKYQTEVVPALMQEFRYRSVMQVPRIEKIVLNIGLGEAIQNSKALDAATADLAAIAGQKPVITRARKSIAAFKVRQGMPIGVMVTLRGPRMWSFLDRLMNLVLPRLRDFRGVSRRSFDGRGNYSIGLREQIVFPEIDYDKVDKLR 151          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_MOOTA (50S ribosomal protein L5 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplE PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.196e-46
Identity = 89/166 (53.61%), Postives = 122/166 (73.49%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            RLK  YL++I   L+ +F Y NI ++PK+EKIV+N G+ +A QN K ++ A+ DL  ITGQ+PV T+A+ SIA FK+R+G  +G  VTLRG+ MY FLDRLIN+ LPR RDF GV+PNSFDG GNY++G++EQ +FPEI YD + K R   +  +   K+D+EAR+
Sbjct:    3 RLKEKYLQEIRKALQAKFGYKNIMEIPKLEKIVINMGVSEATQNPKAIDNAVQDLMTITGQKPVVTKAKKSIAAFKLRQGTSIGCKVTLRGDRMYEFLDRLINVALPRVRDFHGVSPNSFDGRGNYTLGIREQLIFPEIEYDKIDKVRGMDIVMVTTAKSDEEARE 168          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_CLOPH (50S ribosomal protein L5 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplE PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.196e-46
Identity = 91/166 (54.82%), Postives = 121/166 (72.89%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            RLK  Y  +I+  ++++F Y N  Q+PK++KIV+N G+G+A  NAK LEAA+ D+ +I GQ+ V T+AR S+A FK+REG  +G  VTLRG  MY F DRLINL LPR RDF+GVNPN+FDG GNY++GVKEQ +FPEI YD + K R   +  +   KTD+EAR+
Sbjct:    3 RLKEIYKNEIMAGMQKKFGYKNEMQIPKLDKIVINMGVGEAKDNAKALEAAVKDMEIIAGQKAVITKARKSVANFKLREGVAIGCKVTLRGEKMYEFADRLINLALPRVRDFRGVNPNAFDGRGNYALGVKEQLIFPEIEYDKVDKVRGMDVIFVTTAKTDEEARE 168          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_BACHD (50S ribosomal protein L5 OS=Bacillus halodurans GN=rplE PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.196e-46
Identity = 91/166 (54.82%), Postives = 124/166 (74.70%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            RLK  Y ++IVP L E+F+Y+++  VPK+EKIVVN G+GDA QNAK L+ A+ +L  ITGQ+P+ T+A+ SIA FK+REG P+G  VTLRG  MY FLD+LI++ LPR RDF+G++  +FDG GNY++GVKEQ +FPEI YD + K R   +  +    TD+EAR+
Sbjct:    3 RLKEKYQKEIVPSLTEKFNYSSVMAVPKLEKIVVNMGVGDAVQNAKALDKAVEELTEITGQKPIITKAKKSIAGFKLREGMPIGAKVTLRGERMYEFLDKLISVSLPRVRDFRGISKKAFDGRGNYTLGVKEQLIFPEIDYDKVDKVRGMDVVIVTTASTDEEARE 168          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_LYSSC (50S ribosomal protein L5 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplE PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.562e-46
Identity = 88/166 (53.01%), Postives = 123/166 (74.10%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            RLK  YL ++ P L  +F Y ++ Q+PK+EKIV+N G+GDA QN+K L+AA+ +L +ITGQ+PV T+A+ SIA F++REG P+G  VTLRG  MY FLD+LI++ LPR RDF+GV+  +FDG GNY++GVKEQ +FPEI YD + K R   +  +    +D+EAR+
Sbjct:    3 RLKEKYLNEVSPALMSKFGYKSVMQLPKVEKIVINMGVGDAVQNSKALDAAVEELTIITGQKPVVTKAKKSIAGFRLREGMPIGAKVTLRGERMYEFLDKLISISLPRVRDFRGVSKKAFDGRGNYTLGVKEQLIFPEIDYDKVSKVRGMDIVIVTTANSDEEARE 168          
The following BLAST results are available for this feature:
BLAST of FC869145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK5_OLTVI5.367e-4760.1450S ribosomal protein L5, chloroplastic OS=Oltmann... [more]
RL5_DICT67.009e-4755.7650S ribosomal protein L5 OS=Dictyoglomus thermophi... [more]
RL5_CLOAB7.009e-4753.0150S ribosomal protein L5 OS=Clostridium acetobutyl... [more]
RK5_RHDSA7.009e-4759.1850S ribosomal protein L5, chloroplastic OS=Rhodomo... [more]
RK5_NEPOL7.009e-4760.1450S ribosomal protein L5, chloroplastic OS=Nephros... [more]
RL5_ROSS19.154e-4762.1650S ribosomal protein L5 OS=Roseiflexus sp. (strai... [more]
RL5_MOOTA1.196e-4653.6150S ribosomal protein L5 OS=Moorella thermoacetica... [more]
RL5_CLOPH1.196e-4654.8250S ribosomal protein L5 OS=Clostridium phytoferme... [more]
RL5_BACHD1.196e-4654.8250S ribosomal protein L5 OS=Bacillus halodurans GN... [more]
RL5_LYSSC1.562e-4653.0150S ribosomal protein L5 OS=Lysinibacillus sphaeri... [more]

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Properties
Property NameValue
Genbank descriptionC31009A05EF AbioticL1 Citrus clementina cDNA clone C31009A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869145 ID=FC869145; Name=FC869145; organism=Citrus clementina; type=EST; length=685bp
TGTCCTTCGCTGTTACACTCCTCTGCGTCGTCGTTTCACGGCCGATTCCC
CGCTCTCTCATCTTCATCATATGTACGGCCCACATATCCAAACCCTATAA
ATGTGAATGGGGTGGTCTCGGTGAAGGCGGCGGCTGGAGGCATTGTGTTG
GTGGAGAAATCCGAAGCAGAGAAGACCGGACGGCTCAAAACCACGTATCT
CGAAAAGATTGTTCCTTTGCTCAGAGAAGAGTTTTCCTATACTAACATTC
ACCAGGTTCCGAAGATTGAGAAGATTGTTGTGAATTGTGGTATTGGAGAT
GCTGCTCAGAATGCAAAAGGCCTGGAGGCGGCAATGAATGACTTGGCACT
CATTACAGGTCAGAGACCTGTAAAGACGCGAGCAAGGAATTCCATTGCCA
CCTTCAAGATCAGGGAAGGCGAACCACTTGGAATTGCTGTCACACTCAGA
GGAAATATGATGTACTCATTTCTAGACCGTCTTATTAATTTGGGGCTTCC
TAGAACAAGGGATTTCCAAGGTGTGAATCCCAATAGCTTTGATGGACATG
GGAATTACAGCATTGGTGTTAAAGAACAGAGTGTTTTCCCGGAGATCAGG
TATGATGCTCTTGGCAAGCCCAGGGAATAGATGTTTGCATTACACAACCG
CAAAACTGATAAAGAAGCCAGAGACTTTTGGCTCT
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