FC869145

Overview
NameFC869145
Unique NameFC869145
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_LISW6 (50S ribosomal protein L5 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplE PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.562e-46
Identity = 86/148 (58.11%), Postives = 117/148 (79.05%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR 624
            RLK  YL++IVP L  +F+Y ++ +VPKI+KIV+N G+GDA  NAK L++A+ +LALITGQ+PV T+A+NSIA F++REG P+G  VTLRG  MY FLD+L+ + LPR RDF+GV+  +FDG GNY++GV+EQ +FPEI YD + K R
Sbjct:    3 RLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDATANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLREGMPIGAKVTLRGERMYDFLDKLVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYDQVSKVR 150          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_LISMO (50S ribosomal protein L5 OS=Listeria monocytogenes GN=rplE PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.562e-46
Identity = 86/148 (58.11%), Postives = 117/148 (79.05%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR 624
            RLK  YL++IVP L  +F+Y ++ +VPKI+KIV+N G+GDA  NAK L++A+ +LALITGQ+PV T+A+NSIA F++REG P+G  VTLRG  MY FLD+L+ + LPR RDF+GV+  +FDG GNY++GV+EQ +FPEI YD + K R
Sbjct:    3 RLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDATANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLREGMPIGAKVTLRGERMYDFLDKLVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYDQVSKVR 150          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_LISMH (50S ribosomal protein L5 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rplE PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.562e-46
Identity = 86/148 (58.11%), Postives = 117/148 (79.05%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR 624
            RLK  YL++IVP L  +F+Y ++ +VPKI+KIV+N G+GDA  NAK L++A+ +LALITGQ+PV T+A+NSIA F++REG P+G  VTLRG  MY FLD+L+ + LPR RDF+GV+  +FDG GNY++GV+EQ +FPEI YD + K R
Sbjct:    3 RLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDATANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLREGMPIGAKVTLRGERMYDFLDKLVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYDQVSKVR 150          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_LISMF (50S ribosomal protein L5 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplE PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.562e-46
Identity = 86/148 (58.11%), Postives = 117/148 (79.05%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR 624
            RLK  YL++IVP L  +F+Y ++ +VPKI+KIV+N G+GDA  NAK L++A+ +LALITGQ+PV T+A+NSIA F++REG P+G  VTLRG  MY FLD+L+ + LPR RDF+GV+  +FDG GNY++GV+EQ +FPEI YD + K R
Sbjct:    3 RLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDATANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLREGMPIGAKVTLRGERMYDFLDKLVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYDQVSKVR 150          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_LISMC (50S ribosomal protein L5 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplE PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.562e-46
Identity = 86/148 (58.11%), Postives = 117/148 (79.05%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR 624
            RLK  YL++IVP L  +F+Y ++ +VPKI+KIV+N G+GDA  NAK L++A+ +LALITGQ+PV T+A+NSIA F++REG P+G  VTLRG  MY FLD+L+ + LPR RDF+GV+  +FDG GNY++GV+EQ +FPEI YD + K R
Sbjct:    3 RLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDATANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLREGMPIGAKVTLRGERMYDFLDKLVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYDQVSKVR 150          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_LISIN (50S ribosomal protein L5 OS=Listeria innocua GN=rplE PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.562e-46
Identity = 86/148 (58.11%), Postives = 117/148 (79.05%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR 624
            RLK  YL++IVP L  +F+Y ++ +VPKI+KIV+N G+GDA  NAK L++A+ +LALITGQ+PV T+A+NSIA F++REG P+G  VTLRG  MY FLD+L+ + LPR RDF+GV+  +FDG GNY++GV+EQ +FPEI YD + K R
Sbjct:    3 RLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDATANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLREGMPIGAKVTLRGERMYDFLDKLVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYDQVSKVR 150          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RK5_SCEOB (50S ribosomal protein L5, chloroplastic OS=Scenedesmus obliquus GN=rpl5 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.562e-46
Identity = 89/150 (59.33%), Postives = 117/150 (78.00%), Query Frame = 1
Query:  175 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR 624
            T RLK  Y EKIVP   ++F Y NIH+VP ++KIV+N GIGDA+QNAK LE  + +L++I GQ+ V TR++ SIA FKIR+  P+G++VTLRG+ MY FLDRLI+L LPR RDFQG+NP SFD +GNYS+G++EQ +FPEI YD + + R
Sbjct:    2 TQRLKKLYTEKIVPKFYKDFQYKNIHEVPSLKKIVINRGIGDASQNAKILETFLKELSIIAGQKGVITRSKKSIAGFKIRDKMPVGVSVTLRGDRMYGFLDRLIHLALPRVRDFQGINPKSFDKNGNYSLGLEEQLMFPEIEYDKIDQIR 151          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_SYNPX (50S ribosomal protein L5 OS=Synechococcus sp. (strain WH8102) GN=rplE PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.039e-46
Identity = 88/143 (61.54%), Postives = 115/143 (80.42%), Query Frame = 1
Query:  184 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDAL 612
            LK  Y E I P L+++ S TNIH+VPK+ K+ VN G+G+AA NAK LEA++N+LA ITGQ+ V TRA+ +IA FKIR+G P+G AVTLRG+ MY+FL+RLINL LPR RDF+GV+P SFDG GNY++GV+EQ +FPEI +D +
Sbjct:    3 LKKRYRETIQPKLQKDLSLTNIHEVPKVVKVTVNRGLGEAAANAKSLEASVNELAQITGQKVVVTRAKKAIAAFKIRQGMPIGCAVTLRGDRMYAFLERLINLALPRIRDFRGVSPKSFDGRGNYTLGVREQIIFPEISFDKI 145          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_DESRM (50S ribosomal protein L5 OS=Desulfotomaculum reducens (strain MI-1) GN=rplE PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.039e-46
Identity = 88/166 (53.01%), Postives = 121/166 (72.89%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            RLK  YL ++ P L ++F Y NI QVPK+EK+++N G+G+A QN+K ++AA+ DL  ITGQRP+ T+A+ SIA FK+R G  +G  VTLRG  MY F+DRL N+ LPR RDF+G++  SFDG GNY++G+KEQ +FPEI YD + K R   +  +   KTD+EAR+
Sbjct:    3 RLKDKYLNEVQPNLMQKFGYKNIMQVPKLEKVIINIGLGEAVQNSKAVDAAVGDLMAITGQRPITTKAKKSIAAFKLRAGMTIGTKVTLRGERMYEFVDRLFNVALPRVRDFRGISDKSFDGRGNYTMGLKEQLIFPEIEYDKIDKVRGMDITFVTTAKTDEEARE 168          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_MACCJ (50S ribosomal protein L5 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplE PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.664e-46
Identity = 89/166 (53.61%), Postives = 124/166 (74.70%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            RLK  +L +I P + ++F Y++I +VPKIEKIVVN GIGDA QN+K L++A+ +L  ITGQ+P+ T+A+ SIATF++REG P+G  VTLRG  MY F D+L+N+ LPR RDF+G++  +FDG GNY++GVKEQ +FPEI YD + K R   +  +    TD+EAR+
Sbjct:    3 RLKEKFLNEITPEMMKKFEYSSIMEVPKIEKIVVNMGIGDAVQNSKVLDSAVEELQAITGQKPMVTKAKKSIATFRLREGMPIGAKVTLRGERMYEFFDKLVNVSLPRVRDFRGISNKAFDGRGNYTLGVKEQLIFPEIDYDKVSKTRGMDIVIVTTANTDEEARE 168          
The following BLAST results are available for this feature:
BLAST of FC869145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL5_LISW61.562e-4658.1150S ribosomal protein L5 OS=Listeria welshimeri se... [more]
RL5_LISMO1.562e-4658.1150S ribosomal protein L5 OS=Listeria monocytogenes... [more]
RL5_LISMH1.562e-4658.1150S ribosomal protein L5 OS=Listeria monocytogenes... [more]
RL5_LISMF1.562e-4658.1150S ribosomal protein L5 OS=Listeria monocytogenes... [more]
RL5_LISMC1.562e-4658.1150S ribosomal protein L5 OS=Listeria monocytogenes... [more]
RL5_LISIN1.562e-4658.1150S ribosomal protein L5 OS=Listeria innocua GN=rp... [more]
RK5_SCEOB1.562e-4659.3350S ribosomal protein L5, chloroplastic OS=Scenede... [more]
RL5_SYNPX2.039e-4661.5450S ribosomal protein L5 OS=Synechococcus sp. (str... [more]
RL5_DESRM2.039e-4653.0150S ribosomal protein L5 OS=Desulfotomaculum reduc... [more]
RL5_MACCJ2.664e-4653.6150S ribosomal protein L5 OS=Macrococcus caseolytic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31009A05EF AbioticL1 Citrus clementina cDNA clone C31009A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869145 ID=FC869145; Name=FC869145; organism=Citrus clementina; type=EST; length=685bp
TGTCCTTCGCTGTTACACTCCTCTGCGTCGTCGTTTCACGGCCGATTCCC
CGCTCTCTCATCTTCATCATATGTACGGCCCACATATCCAAACCCTATAA
ATGTGAATGGGGTGGTCTCGGTGAAGGCGGCGGCTGGAGGCATTGTGTTG
GTGGAGAAATCCGAAGCAGAGAAGACCGGACGGCTCAAAACCACGTATCT
CGAAAAGATTGTTCCTTTGCTCAGAGAAGAGTTTTCCTATACTAACATTC
ACCAGGTTCCGAAGATTGAGAAGATTGTTGTGAATTGTGGTATTGGAGAT
GCTGCTCAGAATGCAAAAGGCCTGGAGGCGGCAATGAATGACTTGGCACT
CATTACAGGTCAGAGACCTGTAAAGACGCGAGCAAGGAATTCCATTGCCA
CCTTCAAGATCAGGGAAGGCGAACCACTTGGAATTGCTGTCACACTCAGA
GGAAATATGATGTACTCATTTCTAGACCGTCTTATTAATTTGGGGCTTCC
TAGAACAAGGGATTTCCAAGGTGTGAATCCCAATAGCTTTGATGGACATG
GGAATTACAGCATTGGTGTTAAAGAACAGAGTGTTTTCCCGGAGATCAGG
TATGATGCTCTTGGCAAGCCCAGGGAATAGATGTTTGCATTACACAACCG
CAAAACTGATAAAGAAGCCAGAGACTTTTGGCTCT
back to top