FC869145

Overview
NameFC869145
Unique NameFC869145
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig65 contig Ccv1_Contig65:60..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_BACC0 (50S ribosomal protein L5 OS=Bacillus cereus (strain AH820) GN=rplE PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.322e-45
Identity = 89/166 (53.61%), Postives = 121/166 (72.89%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            RLK  + ++I P L  +F+Y ++ QVPKIEKIV+N G+GDA  N+K L+ A+ +L  ITGQ+PV TRA+ SIA F++REG P+G  VTLRG  MY F D+L+++ LPR RDF+GV+  SFDG GNY++GVKEQ +FPEI YD + K R   +  +   KTD+EAR+
Sbjct:    3 RLKEKFQKEITPALVSKFNYKSVMQVPKIEKIVINTGVGDAVSNSKALDNAVEELTQITGQKPVVTRAKKSIAGFRLREGMPIGAKVTLRGEQMYEFFDKLVSVSLPRVRDFRGVSKKSFDGRGNYTLGVKEQLIFPEIDYDKVSKVRGMDIVIVTTAKTDEEARE 168          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_BACAH (50S ribosomal protein L5 OS=Bacillus thuringiensis (strain Al Hakam) GN=rplE PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.322e-45
Identity = 89/166 (53.61%), Postives = 121/166 (72.89%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            RLK  + ++I P L  +F+Y ++ QVPKIEKIV+N G+GDA  N+K L+ A+ +L  ITGQ+PV TRA+ SIA F++REG P+G  VTLRG  MY F D+L+++ LPR RDF+GV+  SFDG GNY++GVKEQ +FPEI YD + K R   +  +   KTD+EAR+
Sbjct:    3 RLKEKFQKEITPALVSKFNYKSVMQVPKIEKIVINTGVGDAVSNSKALDNAVEELTQITGQKPVVTRAKKSIAGFRLREGMPIGAKVTLRGEQMYEFFDKLVSVSLPRVRDFRGVSKKSFDGRGNYTLGVKEQLIFPEIDYDKVSKVRGMDIVIVTTAKTDEEARE 168          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_LACBA (50S ribosomal protein L5 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rplE PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.726e-45
Identity = 87/168 (51.79%), Postives = 124/168 (73.81%), Query Frame = 1
Query:  175 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPRE-*MFALHNRKTDKEARD 675
            + RLK  Y+ +I P L E+FSY+++ Q PKIEKIV+N G+GDA  NAK L+ A+ +L LI+GQ+P+ T+A+ SIATF++REG  +G  VTLRG+ MY FLD+LIN+ LPR RDF GV+  +FDG GNY++GV+EQ +FPEI +D + + R   +  +    TD+E+R+
Sbjct:    2 SARLKEKYVSEITPALVEKFSYSSVMQTPKIEKIVLNMGVGDAVSNAKNLDEAVEELGLISGQKPLVTKAKKSIATFRLREGMSIGAKVTLRGDRMYEFLDKLINVSLPRVRDFHGVSSRAFDGRGNYTLGVREQLIFPEINFDNVNRVRGLDIVIVTTANTDEESRE 169          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_ENTFA (50S ribosomal protein L5 OS=Enterococcus faecalis GN=rplE PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.726e-45
Identity = 84/166 (50.60%), Postives = 123/166 (74.10%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            RLK  Y++++ P L E+F+Y+++ Q PK++KIV+N G+GDA  NAK L+ A+ +LALITGQ+P+ T+A+ SIA F++REG P+G  VTLRG  MY FLD+L+ + LPR RDF GV+  +FDG GNY++G+KEQ +FPE+ YD + K R   +  +    TD+E+R+
Sbjct:    3 RLKEKYIKEVTPSLVEKFNYSSVMQTPKVDKIVINMGVGDAVSNAKNLDKAVEELALITGQKPLITKAKKSIAGFRLREGMPIGAKVTLRGERMYEFLDKLVTVSLPRVRDFHGVSKKAFDGRGNYTLGIKEQLIFPEVDYDLVDKVRGMDIVIVTTANTDEESRE 168          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_DEIRA (50S ribosomal protein L5 OS=Deinococcus radiodurans GN=rplE PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.726e-45
Identity = 86/165 (52.12%), Postives = 126/165 (76.36%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEAR 672
            +LKT Y +++ P L ++F Y+++  VP+IEKIVVN G+G + +++K ++ A  +LALIT Q+P+ T+A+ SI+ FK+R+G P+GI VTLRG  MY FL++LIN+GLPR RDF+G+NPN+FDG GNY++G+KEQ +FPEI YD + K R   +  +   KTD+EAR
Sbjct:    3 QLKTKYNDQVRPALMQQFGYSSVMAVPRIEKIVVNEGLGSSKEDSKAIDKAAKELALITLQKPIITKAKKSISNFKLRQGMPVGIKVTLRGERMYVFLEKLINIGLPRIRDFRGINPNAFDGRGNYNLGIKEQLIFPEITYDMVDKTRGMDITIVTTAKTDEEAR 167          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_CLOBL (50S ribosomal protein L5 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplE PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.726e-45
Identity = 90/166 (54.22%), Postives = 120/166 (72.29%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            RL+  Y +++V  L ++F Y NI +VPK+EKIV+N G+G+A +N K LEAA+ DLA ITGQ+P+ T+A+ S+A FKIRE  PLG  VTLR   MY F D+LIN+ LPR RDF GV+  SFDG GNY+IG+KEQ +FPEI +D + K R   +  +   KTD+EAR+
Sbjct:    4 RLQEKYEKEVVSALMDKFGYKNIMEVPKLEKIVINMGVGEAKENQKSLEAAVEDLAKITGQKPILTKAKKSVANFKIREDMPLGCKVTLRKQNMYEFADKLINVALPRVRDFSGVSSKSFDGRGNYAIGIKEQLIFPEIEFDKIDKIRGMDIIFVTTAKTDEEARE 169          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_CLOBK (50S ribosomal protein L5 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplE PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.726e-45
Identity = 90/166 (54.22%), Postives = 120/166 (72.29%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            RL+  Y +++V  L ++F Y NI +VPK+EKIV+N G+G+A +N K LEAA+ DLA ITGQ+P+ T+A+ S+A FKIRE  PLG  VTLR   MY F D+LIN+ LPR RDF GV+  SFDG GNY+IG+KEQ +FPEI +D + K R   +  +   KTD+EAR+
Sbjct:    4 RLQEKYEKEVVSALMDKFGYKNIMEVPKLEKIVINMGVGEAKENQKSLEAAVEDLAKITGQKPILTKAKKSVANFKIREDMPLGCKVTLRKQNMYEFADKLINVALPRVRDFSGVSSKSFDGRGNYAIGIKEQLIFPEIEFDKIDKIRGMDIIFVTTAKTDEEARE 169          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_CLOBJ (50S ribosomal protein L5 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplE PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.726e-45
Identity = 90/166 (54.22%), Postives = 120/166 (72.29%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            RL+  Y +++V  L ++F Y NI +VPK+EKIV+N G+G+A +N K LEAA+ DLA ITGQ+P+ T+A+ S+A FKIRE  PLG  VTLR   MY F D+LIN+ LPR RDF GV+  SFDG GNY+IG+KEQ +FPEI +D + K R   +  +   KTD+EAR+
Sbjct:    4 RLQEKYEKEVVSALMDKFGYKNIMEVPKLEKIVINMGVGEAKENQKSLEAAVEDLAKITGQKPILTKAKKSVANFKIREDMPLGCKVTLRKQNMYEFADKLINVALPRVRDFSGVSSKSFDGRGNYAIGIKEQLIFPEIEFDKIDKIRGMDIIFVTTAKTDEEARE 169          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_CLOBH (50S ribosomal protein L5 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rplE PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.726e-45
Identity = 90/166 (54.22%), Postives = 120/166 (72.29%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            RL+  Y +++V  L ++F Y NI +VPK+EKIV+N G+G+A +N K LEAA+ DLA ITGQ+P+ T+A+ S+A FKIRE  PLG  VTLR   MY F D+LIN+ LPR RDF GV+  SFDG GNY+IG+KEQ +FPEI +D + K R   +  +   KTD+EAR+
Sbjct:    4 RLQEKYEKEVVSALMDKFGYKNIMEVPKLEKIVINMGVGEAKENQKSLEAAVEDLAKITGQKPILTKAKKSVANFKIREDMPLGCKVTLRKQNMYEFADKLINVALPRVRDFSGVSSKSFDGRGNYAIGIKEQLIFPEIEFDKIDKIRGMDIIFVTTAKTDEEARE 169          
BLAST of FC869145 vs. ExPASy Swiss-Prot
Match: RL5_CLOB6 (50S ribosomal protein L5 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplE PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.726e-45
Identity = 90/166 (54.22%), Postives = 120/166 (72.29%), Query Frame = 1
Query:  181 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPR-E*MFALHNRKTDKEARD 675
            RL+  Y +++V  L ++F Y NI +VPK+EKIV+N G+G+A +N K LEAA+ DLA ITGQ+P+ T+A+ S+A FKIRE  PLG  VTLR   MY F D+LIN+ LPR RDF GV+  SFDG GNY+IG+KEQ +FPEI +D + K R   +  +   KTD+EAR+
Sbjct:    4 RLQEKYEKEVVSALMDKFGYKNIMEVPKLEKIVINMGVGEAKENQKSLEAAVEDLAKITGQKPILTKAKKSVANFKIREDMPLGCKVTLRKQNMYEFADKLINVALPRVRDFSGVSSKSFDGRGNYAIGIKEQLIFPEIEFDKIDKIRGMDIIFVTTAKTDEEARE 169          
The following BLAST results are available for this feature:
BLAST of FC869145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL5_BACC01.322e-4553.6150S ribosomal protein L5 OS=Bacillus cereus (strai... [more]
RL5_BACAH1.322e-4553.6150S ribosomal protein L5 OS=Bacillus thuringiensis... [more]
RL5_LACBA1.726e-4551.7950S ribosomal protein L5 OS=Lactobacillus brevis (... [more]
RL5_ENTFA1.726e-4550.6050S ribosomal protein L5 OS=Enterococcus faecalis ... [more]
RL5_DEIRA1.726e-4552.1250S ribosomal protein L5 OS=Deinococcus radioduran... [more]
RL5_CLOBL1.726e-4554.2250S ribosomal protein L5 OS=Clostridium botulinum ... [more]
RL5_CLOBK1.726e-4554.2250S ribosomal protein L5 OS=Clostridium botulinum ... [more]
RL5_CLOBJ1.726e-4554.2250S ribosomal protein L5 OS=Clostridium botulinum ... [more]
RL5_CLOBH1.726e-4554.2250S ribosomal protein L5 OS=Clostridium botulinum ... [more]
RL5_CLOB61.726e-4554.2250S ribosomal protein L5 OS=Clostridium botulinum ... [more]

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Properties
Property NameValue
Genbank descriptionC31009A05EF AbioticL1 Citrus clementina cDNA clone C31009A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869145 ID=FC869145; Name=FC869145; organism=Citrus clementina; type=EST; length=685bp
TGTCCTTCGCTGTTACACTCCTCTGCGTCGTCGTTTCACGGCCGATTCCC
CGCTCTCTCATCTTCATCATATGTACGGCCCACATATCCAAACCCTATAA
ATGTGAATGGGGTGGTCTCGGTGAAGGCGGCGGCTGGAGGCATTGTGTTG
GTGGAGAAATCCGAAGCAGAGAAGACCGGACGGCTCAAAACCACGTATCT
CGAAAAGATTGTTCCTTTGCTCAGAGAAGAGTTTTCCTATACTAACATTC
ACCAGGTTCCGAAGATTGAGAAGATTGTTGTGAATTGTGGTATTGGAGAT
GCTGCTCAGAATGCAAAAGGCCTGGAGGCGGCAATGAATGACTTGGCACT
CATTACAGGTCAGAGACCTGTAAAGACGCGAGCAAGGAATTCCATTGCCA
CCTTCAAGATCAGGGAAGGCGAACCACTTGGAATTGCTGTCACACTCAGA
GGAAATATGATGTACTCATTTCTAGACCGTCTTATTAATTTGGGGCTTCC
TAGAACAAGGGATTTCCAAGGTGTGAATCCCAATAGCTTTGATGGACATG
GGAATTACAGCATTGGTGTTAAAGAACAGAGTGTTTTCCCGGAGATCAGG
TATGATGCTCTTGGCAAGCCCAGGGAATAGATGTTTGCATTACACAACCG
CAAAACTGATAAAGAAGCCAGAGACTTTTGGCTCT
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