FC869146

Overview
NameFC869146
Unique NameFC869146
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7564 contig Ccv1_Contig7564:1..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869146 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1
Query:  511 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGA 678
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DP A
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEA 207          
BLAST of FC869146 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1
Query:  511 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGA 678
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DP A
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEA 207          
BLAST of FC869146 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1
Query:  511 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGA 678
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DP A
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEA 56          
BLAST of FC869146 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1
Query:  511 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGA 678
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DP A
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEA 205          
BLAST of FC869146 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 1
Query:  511 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGA 678
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DP A
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEA 205          
BLAST of FC869146 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22
Identity = 51/64 (79.69%), Postives = 54/64 (84.38%), Query Frame = 1
Query:  490 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPGA 678
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DP A
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEA 64          
BLAST of FC869146 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 53/140 (37.86%), Postives = 73/140 (52.14%), Query Frame = 1
Query:  256 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLG 657
            PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG
Sbjct:   74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 206          
BLAST of FC869146 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 59/166 (35.54%), Postives = 80/166 (48.19%), Query Frame = 1
Query:  178 GSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLG 657
            GS+SV+  +    PDR  +       PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG
Sbjct:   50 GSRSVAVSAVAADPDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 206          
BLAST of FC869146 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.989e-17
Identity = 64/192 (33.33%), Postives = 88/192 (45.83%), Query Frame = 1
Query:  103 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDP 672
            VG    LAPS     +G       T S  V+  + W+            G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + DP
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWF-----------PGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDP 181          
BLAST of FC869146 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 55/145 (37.93%), Postives = 73/145 (50.34%), Query Frame = 1
Query:  244 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDP 672
            + G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDPLG + DP
Sbjct:   50 MPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDP 182          
The following BLAST results are available for this feature:
BLAST of FC869146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB2F_SOLLC3.873e-2492.86Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC3.873e-2492.86Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC3.873e-2492.86Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC3.873e-2492.86Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC3.873e-2492.86Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA6.183e-2279.69Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB12_SOLLC7.074e-1837.86Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY2.058e-1735.54Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB121_HORVU5.989e-1733.33Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC5.070e-1637.93Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31009A06EF AbioticL1 Citrus clementina cDNA clone C31009A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869146 ID=FC869146; Name=FC869146; organism=Citrus clementina; type=EST; length=696bp
ACAGCTTCTCTTGCTTCACAGCTTCTCTTGCTTACACAGACTTCTGCTTC
TCAATTAAATTCCTCAATGGCAACCTCGACCATGGCTCTCTCCTCATCAT
TCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAAT
GGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGG
TAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCCCACTCTCTG
GCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGG
GACACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGA
ACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCG
TCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTG
TGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTT
GGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTT
GCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGG
CCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCC
ATTGGGTTTGGCTGATGACCCGGGAGCTTTGCTGAGCTCAGGTTAA
back to top