FC869148

Overview
NameFC869148
Unique NameFC869148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869148 vs. ExPASy Swiss-Prot
Match: FADB_ERWCT (Fatty acid oxidation complex subunit alpha OS=Erwinia carotovora subsp. atroseptica GN=fadB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 46/132 (34.85%), Postives = 70/132 (53.03%), Query Frame = 1
Query:  301 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRIXG 687
            N L T  +  L  A + ++E  +   +++RS  P  F  GAD+ E   +  +P+E +H ++    S F+ LE LP+PT++ I+              D R+    A +GLPET L I+PG GGT RLPR+ G
Sbjct:   29 NTLDTRTVASLGKALDVLAEQPNLKGLLLRSDKP-AFIVGADITEFLSLFAAPAEKLHEWLVFANSIFNRLEDLPVPTLSAINSYALGGGCECVLATDFRLATPDARIGLPETKLGIMPGFGGTVRLPRLLG 159          
BLAST of FC869148 vs. ExPASy Swiss-Prot
Match: FADJ_ERWCT (Fatty acid oxidation complex subunit alpha OS=Erwinia carotovora subsp. atroseptica GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 43/132 (32.58%), Postives = 64/132 (48.48%), Query Frame = 1
Query:  301 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRIXG 687
            N L ++    +   FE   + ++   ++  S+ P  F AGAD+    + S +E         + TF  + ALP P +A I              CD R+C   E  +LGLPE  L ++PG+GGTQRLPR+ G
Sbjct:   43 NTLKSEFAEQILSVFELARQHATLRGLIFISAKPDSFIAGADITMLNKCSSAEQAENLAKQGQETFDQIAALPFPVVAAIHGACLGGGLELALACDYRVCSLDEKTVLGLPEVQLGLLPGSGGTQRLPRLIG 174          
BLAST of FC869148 vs. ExPASy Swiss-Prot
Match: FADB_SHEHH (Fatty acid oxidation complex subunit alpha OS=Shewanella halifaxensis (strain HAW-EB4) GN=fadB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 45/132 (34.09%), Postives = 64/132 (48.48%), Query Frame = 1
Query:  301 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE---IHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRIXG 687
            N    + +  L  A ++I +D+S   +M+ SS    F  GAD+ E   +   E   +  ++      F+ LE LP PT++ I+              D RI    A +GLPET L IIPG GGT RLPR+ G
Sbjct:   29 NKFDRETIDSLNAALDSIKQDTSIKALML-SSAKDAFIVGADITEFLGLFAEEDAVLQSWLEQANVVFNKLEDLPFPTLSAINGFALGAGCETILATDFRIADTTARIGLPETKLGIIPGFGGTVRLPRVIG 159          
BLAST of FC869148 vs. ExPASy Swiss-Prot
Match: FADB_YERE8 (Fatty acid oxidation complex subunit alpha OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=fadB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = 1
Query:  301 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRIXG 687
            N L T  +  L  A   + + S    +++RS+    F  GAD+ E   +    P ++H ++      F+ LE LP+PTIA I+              D R+    A +GLPET L I+PG GG+ RLPR+ G
Sbjct:   29 NKLDTQTVANLGEALVVLEKQSELKGLLLRSA-KAAFIVGADITEFLSLFNEPPEKLHQWLVFANDIFNRLEDLPVPTIAAINGYALGGGCECILATDFRVASPEARIGLPETKLGIMPGFGGSVRLPRLLG 159          
BLAST of FC869148 vs. ExPASy Swiss-Prot
Match: FADB_SERP5 (Fatty acid oxidation complex subunit alpha OS=Serratia proteamaculans (strain 568) GN=fadB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 1
Query:  301 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRIXGN 690
            N L T  +  L  A   + + +    +++RS+    F  GAD+ E   +  +P+E +  ++N   + F+ LE LP+PTI+ I+              D R+    A +GLPET L I+PG GG+ RLPR+ GN
Sbjct:   29 NKLDTRTVASLGEALAVLEKQTELKGLLLRST-KAAFIVGADITEFLSLFAAPAEKLQEWLNFANAIFNRLEDLPVPTISAINGYALGGGCECILATDFRVASPDARIGLPETKLGIMPGFGGSVRLPRLLGN 160          
BLAST of FC869148 vs. ExPASy Swiss-Prot
Match: FADB_SHEPW (Fatty acid oxidation complex subunit alpha OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=fadB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 45/132 (34.09%), Postives = 65/132 (49.24%), Query Frame = 1
Query:  301 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRST---FSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRIXG 687
            N    + +  L  A ++I +++S   +M+ S+ P  F  GAD+ E   +   E    ++ L      F+ LE LP PTI+ I+              D R+    A +GLPET L IIPG GGT RLPR+ G
Sbjct:   29 NKFDRETIDSLNAALDSIKQNNSIKGLMLTSAKP-AFIVGADITEFLGLFAEEDAVLLSWLEEANVVFNKLEDLPFPTISAINGFALGAGCETILATDFRVADTTARIGLPETKLGIIPGFGGTVRLPRVVG 159          
BLAST of FC869148 vs. ExPASy Swiss-Prot
Match: FADB_YERPY (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=fadB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 43/132 (32.58%), Postives = 66/132 (50.00%), Query Frame = 1
Query:  301 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRIXG 687
            N L T  +  L  A   + + S    +++RS+   +   GAD+ E   +    P ++H ++    + F+ LE LP+PTI+ I+              D RI    A +GLPET L I+PG GG+ RLPR+ G
Sbjct:   29 NKLDTKTVANLGEALNVLEKQSELKGLLLRSAKTALI-VGADITEFLSLFNAPPEKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLG 159          
BLAST of FC869148 vs. ExPASy Swiss-Prot
Match: FADB_YERPS (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis GN=fadB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 43/132 (32.58%), Postives = 66/132 (50.00%), Query Frame = 1
Query:  301 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRIXG 687
            N L T  +  L  A   + + S    +++RS+   +   GAD+ E   +    P ++H ++    + F+ LE LP+PTI+ I+              D RI    A +GLPET L I+PG GG+ RLPR+ G
Sbjct:   29 NKLDTKTVANLGEALNVLEKQSELKGLLLRSAKTALI-VGADITEFLSLFNAPPEKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLG 159          
BLAST of FC869148 vs. ExPASy Swiss-Prot
Match: FADB_YERPP (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis (strain Pestoides F) GN=fadB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 43/132 (32.58%), Postives = 66/132 (50.00%), Query Frame = 1
Query:  301 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRIXG 687
            N L T  +  L  A   + + S    +++RS+   +   GAD+ E   +    P ++H ++    + F+ LE LP+PTI+ I+              D RI    A +GLPET L I+PG GG+ RLPR+ G
Sbjct:   29 NKLDTKTVANLGEALNVLEKQSELKGLLLRSAKTALI-VGADITEFLSLFNAPPEKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLG 159          
BLAST of FC869148 vs. ExPASy Swiss-Prot
Match: FADB_YERPN (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 43/132 (32.58%), Postives = 66/132 (50.00%), Query Frame = 1
Query:  301 NALGTDMLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRIXG 687
            N L T  +  L  A   + + S    +++RS+   +   GAD+ E   +    P ++H ++    + F+ LE LP+PTI+ I+              D RI    A +GLPET L I+PG GG+ RLPR+ G
Sbjct:   29 NKLDTKTVANLGEALNVLEKQSELKGLLLRSAKTALI-VGADITEFLSLFNAPPEKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLG 159          
The following BLAST results are available for this feature:
BLAST of FC869148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
FADB_ERWCT8.949e-1334.85Fatty acid oxidation complex subunit alpha OS=Erwi... [more]
FADJ_ERWCT1.994e-1232.58Fatty acid oxidation complex subunit alpha OS=Erwi... [more]
FADB_SHEHH1.994e-1234.09Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_YERE82.604e-1233.33Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_SERP57.576e-1233.08Fatty acid oxidation complex subunit alpha OS=Serr... [more]
FADB_SHEPW9.894e-1234.09Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_YERPY1.292e-1132.58Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERPS1.292e-1132.58Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERPP1.292e-1132.58Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERPN1.292e-1132.58Fatty acid oxidation complex subunit alpha OS=Yers... [more]

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Properties
Property NameValue
Genbank descriptionC31009A08EF AbioticL1 Citrus clementina cDNA clone C31009A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869148 ID=FC869148; Name=FC869148; organism=Citrus clementina; type=EST; length=698bp
GGTGCTCGCGTGGGATCAATTTCGAGTCAACAATGAGTGCTTTAACGAAG
CTAACGAAAACACTTGCACATCACTGCGTCAAAAAATCTAAAACCCATTG
GTGCAAACCTGCGCAGCCACTTTTAAATTTATTAATCTCTGAAAATATTG
TTAACATCAACACTTCTCAGTTTCATCAGTACCAAAGCCGTAGAACTCTC
ATTCTAGATTCCGCTTCCTCCGAATCTGTCCAGCTTCAGCGAATCTCCGA
TTCTGATATCGGAATAATTGAGGTTAGTTTAAACAGACCTGCGGCAAAAA
AATGCGCTTGGAACGGATATGTTGAGAGGCTTAAAGCATGCATTTGAAAC
TATCAGTGAGGATTCCTCTGCTAATGTTGTCATGATACGTAGCTCGGTTC
CTAAAGTGTTCTGTGCTGGAGCTGATTTGAAGGAACGCAGGCAAATGAGT
CCATCTGAGATTCATTTTTATGTCAACACATTGCGATCTACATTCTCCTT
CTTAGAGGCACTTCCTATTCCAACCATTGCTGTTATTGATGGAGCAGCAT
TGGGTGGTGGACTTGAAATGGCACTAGCATGTGATCTTCGCATCTGTGGA
GAAGCAGCACTATTGGGCTTGCCTGAAACAGGACTTGCTATAATTCCTGG
GGCGGGTGGGACACAGCGGCTTCCAAGAATAGNTGGAAATCAGTAGCA
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