FC869150

Overview
NameFC869150
Unique NameFC869150
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869150 vs. ExPASy Swiss-Prot
Match: RPE_SERMA (Ribulose-phosphate 3-epimerase OS=Serratia marcescens GN=rpe PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.357e-31
Identity = 69/136 (50.74%), Postives = 95/136 (69.85%), Query Frame = 3
Query:  288 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 692
            +++PSILSA+FA+LGE    V  AG D +H DVMD  +VPN+TIGP+V +ALR      P+DVHLM+   ++ VPDF KAGA  +S H E S   H+ RT+  IK+ G KAG+V NPAT LS ++ V+D +D++L+
Sbjct:    5 LIAPSILSADFARLGEDTANVLAAGGDVVHFDVMDNHYVPNLTIGPMVCEALRNYGITAPIDVHLMVKPVDRIVPDFAKAGASYISFHPEASE--HVDRTIQLIKEHGCKAGLVFNPATPLSYLDYVMDKIDVILL 138          
BLAST of FC869150 vs. ExPASy Swiss-Prot
Match: RPE_BUCAI (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpe PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.556e-30
Identity = 64/135 (47.41%), Postives = 97/135 (71.85%), Query Frame = 3
Query:  291 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 692
            ++PSILSA+FA+LGE +K V  AG D IH DVMD  +VPN+++GP+++++LR      P+DVHLM+   +  +P F KAGA  ++ H E  +T+H+ RTLN IK+ G KAG+  NPAT L+ ++ +L+ +DL+L+
Sbjct:    6 LAPSILSADFARLGEDIKKVIDAGSDLIHFDVMDNHYVPNLSMGPMILESLRNYNITAPIDVHLMVKPVDNLIPQFAKAGATFITFHPE--ATLHIERTLNLIKENGCKAGLAFNPATPLNFLDYILEKLDLILL 138          
BLAST of FC869150 vs. ExPASy Swiss-Prot
Match: RPE_SHIFL (Ribulose-phosphate 3-epimerase OS=Shigella flexneri GN=rpe PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.921e-30
Identity = 67/136 (49.26%), Postives = 94/136 (69.12%), Query Frame = 3
Query:  288 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 692
            +++PSILSA+FA+LGE       AG D +H DVMD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S   H+ RTL  IK+ G KAG+V NPAT LS ++ V+D +D++L+
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILL 138          
BLAST of FC869150 vs. ExPASy Swiss-Prot
Match: RPE_ECOLI (Ribulose-phosphate 3-epimerase OS=Escherichia coli (strain K12) GN=rpe PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.921e-30
Identity = 67/136 (49.26%), Postives = 94/136 (69.12%), Query Frame = 3
Query:  288 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 692
            +++PSILSA+FA+LGE       AG D +H DVMD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S   H+ RTL  IK+ G KAG+V NPAT LS ++ V+D +D++L+
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILL 138          
BLAST of FC869150 vs. ExPASy Swiss-Prot
Match: RPE_ECOL6 (Ribulose-phosphate 3-epimerase OS=Escherichia coli O6 GN=rpe PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.921e-30
Identity = 67/136 (49.26%), Postives = 94/136 (69.12%), Query Frame = 3
Query:  288 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 692
            +++PSILSA+FA+LGE       AG D +H DVMD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S   H+ RTL  IK+ G KAG+V NPAT LS ++ V+D +D++L+
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILL 138          
BLAST of FC869150 vs. ExPASy Swiss-Prot
Match: RPE_ECO57 (Ribulose-phosphate 3-epimerase OS=Escherichia coli O157:H7 GN=rpe PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.921e-30
Identity = 67/136 (49.26%), Postives = 94/136 (69.12%), Query Frame = 3
Query:  288 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 692
            +++PSILSA+FA+LGE       AG D +H DVMD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S   H+ RTL  IK+ G KAG+V NPAT LS ++ V+D +D++L+
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILL 138          
BLAST of FC869150 vs. ExPASy Swiss-Prot
Match: RPE_HAEIN (Ribulose-phosphate 3-epimerase OS=Haemophilus influenzae GN=rpe PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.931e-29
Identity = 67/136 (49.26%), Postives = 93/136 (68.38%), Query Frame = 3
Query:  288 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 692
            +++PSILSA+ A+LG+ V+ V  AG D IH DVMD  +VPN+T GP V  ALR      P+DVHLM+   ++ +PDF KAGA+ ++ H E S   H+ R+L  I+D G K+G+V NPA  LS ++ VLD VD+VL+
Sbjct:    5 LIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYGITAPIDVHLMVKPVDRIIPDFAKAGANYITFHPESSE--HIDRSLQLIRDCGCKSGLVFNPAMPLSYLDYVLDKVDVVLL 138          
BLAST of FC869150 vs. ExPASy Swiss-Prot
Match: RPE_TREPA (Ribulose-phosphate 3-epimerase OS=Treponema pallidum GN=rpe PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.677e-28
Identity = 60/134 (44.78%), Postives = 88/134 (65.67%), Query Frame = 3
Query:  291 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 692
            ++PS+LSA+F+ L   +  +E  G  W+H+DVMDG FVPN+T G  V+  LR  T LP DVHLM+  P   + DF++AGAD ++ H E  + +H HR ++ I+  G K G+ L P+T ++A+  VL  VDLVL+
Sbjct:    7 LAPSLLSADFSALDRALVYLEAHGAQWVHLDVMDGHFVPNLTFGAPVLRCLRSKTHLPFDVHLMVSRPADLIEDFVQAGADFLTFHIE--AEVHAHRLIHAIRGRGVKVGISLVPSTPVAALSEVLPFVDLVLV 138          
BLAST of FC869150 vs. ExPASy Swiss-Prot
Match: RPE_RHORU (Ribulose-phosphate 3-epimerase OS=Rhodospirillum rubrum GN=cbbE PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.265e-27
Identity = 64/136 (47.06%), Postives = 91/136 (66.91%), Query Frame = 3
Query:  285 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 692
            I ++PS+LSA+FA    +  +    G D +H DVMD  +VPN+T+GPLV  ALRP T LP+DVHLM    +  +  F +AGAD+++ H E S   H+HR++  I+  G KAGV LNPA+ LS ++ +L+ +DLVLI
Sbjct:    5 IRIAPSLLSADFAISRPRCPSDGRTGADILHFDVMDNHYVPNLTVGPLVCAALRPHTSLPIDVHLMTRPVDPLIDSFAEAGADMITFHPEASD--HVHRSVQMIRKRGLKAGVALNPASPLSLLDHILEDLDLVLI 138          
BLAST of FC869150 vs. ExPASy Swiss-Prot
Match: RPE_STRCO (Ribulose-phosphate 3-epimerase OS=Streptomyces coelicolor GN=rpe PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.398e-26
Identity = 62/134 (46.27%), Postives = 90/134 (67.16%), Query Frame = 3
Query:  291 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 692
            ++PSILSA+FA+L ++ KAVE  G DW+HVDVMD  FVPN+T+G  VV++L   TD PLD HLMI  P++  P +++AGA  V+ H E ++     R   +I+  GA+A + L PAT +   E +L  +D++LI
Sbjct:    5 INPSILSADFARLADEAKAVE--GADWLHVDVMDNHFVPNLTLGVPVVESLARATDTPLDCHLMIEAPDRWAPQYVEAGAGSVTFHAEAAAA--PVRLAREIRAKGARASMALKPATPVEPYEDLLPELDMLLI 134          
The following BLAST results are available for this feature:
BLAST of FC869150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
RPE_SERMA9.357e-3150.74Ribulose-phosphate 3-epimerase OS=Serratia marcesc... [more]
RPE_BUCAI3.556e-3047.41Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE_SHIFL7.921e-3049.26Ribulose-phosphate 3-epimerase OS=Shigella flexner... [more]
RPE_ECOLI7.921e-3049.26Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_ECOL67.921e-3049.26Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_ECO577.921e-3049.26Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_HAEIN3.931e-2949.26Ribulose-phosphate 3-epimerase OS=Haemophilus infl... [more]
RPE_TREPA5.677e-2844.78Ribulose-phosphate 3-epimerase OS=Treponema pallid... [more]
RPE_RHORU1.265e-2747.06Ribulose-phosphate 3-epimerase OS=Rhodospirillum r... [more]
RPE_STRCO1.398e-2646.27Ribulose-phosphate 3-epimerase OS=Streptomyces coe... [more]

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Properties
Property NameValue
Genbank descriptionC31009A10EF AbioticL1 Citrus clementina cDNA clone C31009A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869150 ID=FC869150; Name=FC869150; organism=Citrus clementina; type=EST; length=693bp
GGCTGAAATTCGGTTAGAGAATACGAACGAAAACAGATACCATATTTCCT
CTCACTAGCCATAACCAAACCAACAGTTACGTTTTAGAGAGAGAAACAAA
AAAGAGCGTCAAGATGTCTACAGGCTCGCTGTGTTCATCAACGACTCAGA
TCAATGGCTTTACAGGTGGTTTCATGTTGCAGAAAACCAATCTTAATCAG
CCCAGTTCACTTAGTTTTACAAGGAGGAGAATTCATACTATAGTGAAGGC
ATCAGCTCGTGTGGATAAGTTCTCGAAAAGTGATATTATTGTTTCTCCAT
CTATTCTCTCTGCTAATTTCGCGAAGTTAGGCGAGCAGGTAAAAGCAGTG
GAATTGGCTGGTTGTGATTGGATTCATGTTGATGTCATGGATGGTCGTTT
TGTTCCAAACATTACAATTGGACCTCTTGTGGTTGATGCCTTGCGCCCTG
TGACAGACCTTCCTTTGGATGTTCATTTGATGATTGTCGAACCTGAACAA
CGAGTGCCTGATTTTATCAAGGCTGGAGCAGACATAGTCAGCGTCCACTG
TGAGCAATCATCCACCATTCATTTGCACCGCACTCTTAACCAAATAAAAG
ATTTGGGAGCTAAAGCTGGAGTTGTCCTTAACCCTGCTACCTCACTGAGT
GCAATAGAATGTGTCCTTGATGTGGTTGATCTTGTCTTGATCA
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