FC869150

Overview
NameFC869150
Unique NameFC869150
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9463 contig Ccv1_Contig9463:10..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869150 vs. ExPASy Swiss-Prot
Match: RPE_CHLTR (Ribulose-phosphate 3-epimerase OS=Chlamydia trachomatis GN=rpe PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.637e-25
Identity = 59/145 (40.69%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  258 RVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 692
            R +   K  ++V+PSI+ A+ A +G + + +E +G D IH+DVMDG FVPNIT GP VV A+   T+L L+VH MI  P + V  F+KAGAD + VH E +  I     ++ I+  G +AGV  +P TS+  +   + + D++L+
Sbjct:    2 REEAMKKQGVLVAPSIMGADLACIGREARNIEESGADLIHIDVMDGHFVPNITFGPGVVAAINRSTELFLEVHAMIYTPFEFVEAFVKAGADRIIVHFEAAENI--KEIISYIQKCGVQAGVAFSPETSIEFVTSFIPLCDVILL 144          
BLAST of FC869150 vs. ExPASy Swiss-Prot
Match: RPE_CHLMU (Ribulose-phosphate 3-epimerase OS=Chlamydia muridarum GN=rpe PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.444e-25
Identity = 57/139 (41.01%), Postives = 89/139 (64.03%), Query Frame = 3
Query:  276 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 692
            K  ++++PSI+ A+ A LG+  + +E +G + IH+DVMDG FVPNIT GP ++ A+   TDL L+VH MI  P + V  F+KAGAD + VH E +   +L   L+ I+  G +AG+  +P TS+  I   + + D++L+
Sbjct:    3 KQGVLIAPSIMGADLACLGDAARNIEESGANLIHIDVMDGHFVPNITFGPGIIAAINRSTDLFLEVHAMIYTPFEFVEAFVKAGADRIIVHFEAAE--NLKEILDYIRKCGVQAGIAFSPETSIEFISAFIPLCDVILL 139          
BLAST of FC869150 vs. ExPASy Swiss-Prot
Match: RPE_CHLPN (Ribulose-phosphate 3-epimerase OS=Chlamydia pneumoniae GN=rpe PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.232e-24
Identity = 56/139 (40.29%), Postives = 86/139 (61.87%), Query Frame = 3
Query:  276 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 692
            +  ++V PSI+ A+   LG + K +E AG D+IH+D+MDG FVPN+T GP ++ A+   TDL L+VH MI  P + +  F+++GAD + VH E S  I     L+ IK  G +AG+  +P TS+  +   L   D+V++
Sbjct:    4 QESVLVGPSIMGADLTCLGVEAKKLEQAGSDFIHIDIMDGHFVPNLTFGPGIIAAINRSTDLFLEVHAMIYNPFEFIESFVRSGADRIIVHFEASEDI--KELLSYIKKCGVQAGLAFSPDTSIEFLPSFLPFCDVVVL 140          
BLAST of FC869150 vs. ExPASy Swiss-Prot
Match: RPE_MYCTU (Ribulose-phosphate 3-epimerase OS=Mycobacterium tuberculosis GN=rpe PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24
Identity = 60/135 (44.44%), Postives = 87/135 (64.44%), Query Frame = 3
Query:  288 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 692
            +++PSIL+A+FA+L ++  AV   G DW+HVDVMDG FVPN+TIG  VV++L  VTD+P+D HLMI  P++  P + +AGA  V+ H E  +T +       I+  GAKAG+ + P T L     +L   D +L+
Sbjct:    9 LIAPSILAADFARLADEAAAVN--GADWLHVDVMDGHFVPNLTIGLPVVESLLAVTDIPMDCHLMIDNPDRWAPPYAEAGAYNVTFHAE--ATDNPVGVARDIRAAGAKAGISVKPGTPLEPYLDILPHFDTLLV 139          
BLAST of FC869150 vs. ExPASy Swiss-Prot
Match: RPE_MYCBO (Ribulose-phosphate 3-epimerase OS=Mycobacterium bovis GN=rpe PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24
Identity = 60/135 (44.44%), Postives = 87/135 (64.44%), Query Frame = 3
Query:  288 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 692
            +++PSIL+A+FA+L ++  AV   G DW+HVDVMDG FVPN+TIG  VV++L  VTD+P+D HLMI  P++  P + +AGA  V+ H E  +T +       I+  GAKAG+ + P T L     +L   D +L+
Sbjct:    9 LIAPSILAADFARLADEAAAVN--GADWLHVDVMDGHFVPNLTIGLPVVESLLAVTDIPMDCHLMIDNPDRWAPPYAEAGAYNVTFHAE--ATDNPVGVARDIRAAGAKAGISVKPGTPLEPYLDILPHFDTLLV 139          
BLAST of FC869150 vs. ExPASy Swiss-Prot
Match: RPE_BUCBP (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpe PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.890e-23
Identity = 58/138 (42.03%), Postives = 87/138 (63.04%), Query Frame = 3
Query:  288 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 692
            ++S S+LSANF++LGE +  V  +G D IH DVMD  +V N+T GP+V+++LR V     + +DVHLM    +  +  F K   +I+S H E  ST ++ +T+  IK  G K G+ LNP T L  ++ VLD +DL+L+
Sbjct:    5 LLSSSVLSANFSRLGEDIFDVLKSGSDMIHYDVMDNHYVKNLTFGPIVLESLRSVEKIKSMVIDVHLMTCPVDDLIIKFAKLDVNIISFHPE--STNNVEKTIKLIKSYGCKVGLALNPLTPLCVLDNVLDKIDLILL 140          
BLAST of FC869150 vs. ExPASy Swiss-Prot
Match: RPE_HELPY (Ribulose-phosphate 3-epimerase OS=Helicobacter pylori GN=rpe PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.210e-23
Identity = 57/134 (42.54%), Postives = 87/134 (64.93%), Query Frame = 3
Query:  291 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 692
            V+PS+LSA+F  L +++++V  A  D++HVDVMDG +VPN+T+GP+V++ +  ++ +PLDVHLM+         F      I+S+H E     H HR L  IK+LG   G+VLNP T   +I+ +L+ V LVL+
Sbjct:    3 VAPSLLSADFMHLAKEIESVSNA--DFLHVDVMDGHYVPNLTMGPVVLENVTQMSQVPLDVHLMVENASFFAELFAPLKPQIISIHAENEK--HPHRVLQLIKNLGITPGIVLNPHTHEESIKYLLESVGLVLL 132          
BLAST of FC869150 vs. ExPASy Swiss-Prot
Match: RPE_HELPJ (Ribulose-phosphate 3-epimerase OS=Helicobacter pylori J99 GN=rpe PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.181e-23
Identity = 56/134 (41.79%), Postives = 86/134 (64.18%), Query Frame = 3
Query:  291 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 692
            V+PS+LSA+F  L +++++V  A  D++HVDVMDG +VPN+T+GP++++ +  ++ +PLDVHLM+      V  F      I+S+H E     H HR L  IK  G   G+VLNP T   +I+ +L+ V LVL+
Sbjct:    3 VAPSLLSADFMHLAKEIESVSNA--DFLHVDVMDGHYVPNLTMGPVILENVTQMSQVPLDVHLMVENASFFVELFAPLNPQIISIHAENEK--HPHRVLQLIKSSGITPGIVLNPHTHEESIKYLLESVGLVLL 132          
BLAST of FC869150 vs. ExPASy Swiss-Prot
Match: RPE_MYCLE (Ribulose-phosphate 3-epimerase OS=Mycobacterium leprae GN=rpe PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.600e-22
Identity = 58/135 (42.96%), Postives = 86/135 (63.70%), Query Frame = 3
Query:  288 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 692
            +++PSIL+A+FA+L ++   V  A  DW+HVDVMDG FVPN+TIG  VV +L   +D+P+D HLMI  P++  P + +AGA  V+ H E  +T +     + I+  GAKAG+ + P T L+    +L   D +LI
Sbjct:    4 LIAPSILAADFARLTDEAAVV--ASADWLHVDVMDGHFVPNLTIGLPVVQSLLAASDIPMDCHLMIDNPDRWAPPYAEAGAYNVTFHAE--ATDNPVGVAHDIRTAGAKAGIGVKPGTPLNPYLDILPHFDTLLI 134          
BLAST of FC869150 vs. ExPASy Swiss-Prot
Match: RPE_METJA (Ribulose-phosphate 3-epimerase OS=Methanocaldococcus jannaschii GN=rpe PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.310e-21
Identity = 59/136 (43.38%), Postives = 86/136 (63.24%), Query Frame = 3
Query:  285 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 692
            I +  SILSA+F  L E++K  E AG D+ HVD+MDG FVPNI++G  +   ++ +T+LP++VHLM+   +  V +F +   D ++ H E  +     R +N+IK +GAK  V LNPAT L AIE +L  V  VL+
Sbjct:    2 IKIGASILSADFGHLREEIKKAEEAGVDFFHVDMMDGHFVPNISMGIGIAKHVKKLTELPVEVHLMVENVDLFVNEFEE--MDYITFHIE--AVKFPFRIINRIKSIGAKPIVALNPATPLDAIEYILGDVYAVLV 133          
The following BLAST results are available for this feature:
BLAST of FC869150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
RPE_CHLTR2.637e-2540.69Ribulose-phosphate 3-epimerase OS=Chlamydia tracho... [more]
RPE_CHLMU3.444e-2541.01Ribulose-phosphate 3-epimerase OS=Chlamydia murida... [more]
RPE_CHLPN2.232e-2440.29Ribulose-phosphate 3-epimerase OS=Chlamydia pneumo... [more]
RPE_MYCTU2.915e-2444.44Ribulose-phosphate 3-epimerase OS=Mycobacterium tu... [more]
RPE_MYCBO2.915e-2444.44Ribulose-phosphate 3-epimerase OS=Mycobacterium bo... [more]
RPE_BUCBP1.890e-2342.03Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE_HELPY4.210e-2342.54Ribulose-phosphate 3-epimerase OS=Helicobacter pyl... [more]
RPE_HELPJ7.181e-2341.79Ribulose-phosphate 3-epimerase OS=Helicobacter pyl... [more]
RPE_MYCLE1.600e-2242.96Ribulose-phosphate 3-epimerase OS=Mycobacterium le... [more]
RPE_METJA2.310e-2143.38Ribulose-phosphate 3-epimerase OS=Methanocaldococc... [more]

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Properties
Property NameValue
Genbank descriptionC31009A10EF AbioticL1 Citrus clementina cDNA clone C31009A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869150 ID=FC869150; Name=FC869150; organism=Citrus clementina; type=EST; length=693bp
GGCTGAAATTCGGTTAGAGAATACGAACGAAAACAGATACCATATTTCCT
CTCACTAGCCATAACCAAACCAACAGTTACGTTTTAGAGAGAGAAACAAA
AAAGAGCGTCAAGATGTCTACAGGCTCGCTGTGTTCATCAACGACTCAGA
TCAATGGCTTTACAGGTGGTTTCATGTTGCAGAAAACCAATCTTAATCAG
CCCAGTTCACTTAGTTTTACAAGGAGGAGAATTCATACTATAGTGAAGGC
ATCAGCTCGTGTGGATAAGTTCTCGAAAAGTGATATTATTGTTTCTCCAT
CTATTCTCTCTGCTAATTTCGCGAAGTTAGGCGAGCAGGTAAAAGCAGTG
GAATTGGCTGGTTGTGATTGGATTCATGTTGATGTCATGGATGGTCGTTT
TGTTCCAAACATTACAATTGGACCTCTTGTGGTTGATGCCTTGCGCCCTG
TGACAGACCTTCCTTTGGATGTTCATTTGATGATTGTCGAACCTGAACAA
CGAGTGCCTGATTTTATCAAGGCTGGAGCAGACATAGTCAGCGTCCACTG
TGAGCAATCATCCACCATTCATTTGCACCGCACTCTTAACCAAATAAAAG
ATTTGGGAGCTAAAGCTGGAGTTGTCCTTAACCCTGCTACCTCACTGAGT
GCAATAGAATGTGTCCTTGATGTGGTTGATCTTGTCTTGATCA
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