FC869162

Overview
NameFC869162
Unique NameFC869162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9467 contig Ccv1_Contig9467:1..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 2.146e-49
Identity = 90/178 (50.56%), Postives = 122/178 (68.54%), Query Frame = 3
Query:  126 MSLIFSLFVGLL-MVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            +SL+F+L V    +   V +  FD  +  +W      V  +G+ L L+LD  SG+GF +K +YLFGK+ +Q+KLV G+SAGTVTA+Y+ S G   +E DFEFLGN TG+PY + TNVY  G G+REQ+  LWFDPT +FHTYS+LWN   +VF+VD+ P+R   NL+H GI +PK QP
Sbjct:    8 LSLLFTLTVSTTTLFSPVFAGTFDTEFDITWGDGRGKVLNNGELLTLSLDRASGSGFQTKKEYLFGKIDMQLKLVPGNSAGTVTAYYLKSKGDTWDEIDFEFLGNLTGDPYTMHTNVYTQGKGDREQQFHLWFDPTADFHTYSVLWNPHHIVFMVDDIPVREFKNLQHMGIQYPKLQP 185          

HSP 2 Score: 29.6462 bits (65), Expect = 2.146e-49
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            PK   M +YSS+WNAD W
Sbjct:  181 PKLQPMRLYSSLWNADQW 198          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 6.192e-49
Identity = 86/152 (56.58%), Postives = 111/152 (73.03%), Query Frame = 3
Query:  201 YQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            Y+ SWA +H+++   G T  L LD  SGAGF SK  YLFG  S++++LVGGDSAG VTAFY+SS+   H+E DFEFLGN TG+PY++QTNV+  G GNREQR+ LWFDPTK +H+YS+LWN   +V  VD+ PIR   N +  G+ FP +QP
Sbjct:   37 YEPSWASHHIKFLNGGTTTDLILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYLSSNNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGNREQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNSKDLGVKFPFNQP 188          

HSP 2 Score: 29.261 bits (64), Expect = 6.192e-49
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            P    M +YSS+W+ADDW
Sbjct:  184 PFNQPMKIYSSLWDADDW 201          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH21_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.371e-48
Identity = 91/182 (50.00%), Postives = 123/182 (67.58%), Query Frame = 3
Query:  111 SSMVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFN--HVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            S+++ MS+  SLF+GL ++ +V    F+     +W     ++  +G  L L LD  SG+GF SK++YL+GKV +QIKLV G+SAGTVT FY+ S G   +E DFEFLGN +G+PY+V TNVY  G G+REQ+  LWFDPT  FH YS+LWN   +VF +D  PIR   NLE  G+ +PK+QP
Sbjct:    4 STLLVMSI--SLFLGLSILLVVHGKDFNQDIDITWGDGRGNILNNGTLLNLGLDQSSGSGFQSKAEYLYGKVDMQIKLVPGNSAGTVTTFYLKSQGLTWDEIDFEFLGNVSGDPYIVHTNVYTQGKGDREQQFYLWFDPTAAFHNYSILWNPSHIVFYIDGKPIREFKNLEVLGVAYPKNQP 183          

HSP 2 Score: 31.9574 bits (71), Expect = 1.371e-48
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            PK   M +Y S+WNADDW
Sbjct:  179 PKNQPMRMYGSLWNADDW 196          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.372e-48
Identity = 87/177 (49.15%), Postives = 123/177 (69.49%), Query Frame = 3
Query:  126 MSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            ++ +  LF+ L++   VS A F    + +W      ++ +G+ L L+LD  SG+GF SK++YLFGKVS+Q+KLV G+SAGTVT  Y+ S G   +E DFEFLGN++GEPY + TNVY  G G++EQ+  LWFDPT  FHTY++LWN ++++F VD TPIR   N+E  G  FPK++P
Sbjct:    3 ITYLLPLFLSLIITSSVS-ANFQRDVEITWGDGRGQIKNNGELLTLSLDKSSGSGFQSKNEYLFGKVSMQMKLVPGNSAGTVTTLYLKSPGTTWDEIDFEFLGNSSGEPYTLHTNVYTQGKGDKEQQFKLWFDPTANFHTYTILWNPQRIIFTVDGTPIREFKNMESLGTLFPKNKP 178          

HSP 2 Score: 33.4982 bits (75), Expect = 1.372e-48
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            PK   M +YSS+WNADDW
Sbjct:  174 PKNKPMRMYSSLWNADDW 191          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.198e-48
Identity = 90/180 (50.00%), Postives = 125/180 (69.44%), Query Frame = 3
Query:  117 MVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            +V  S+I SL + +    +VSS  F+  +  +W+  HV    DG +  L LD  SGA F+S   +LFG++ ++IKL+ G S GTV A+YMSSD PN +E DFEFLGN  G+PY++QTNVY  G+ NRE+R+ LWFDP K+FHTYS+LWN  Q+VF+VD+ PIR++ N   KG+ +P+ QP
Sbjct:   13 LVGFSIISSLLLWVSQASVVSSGDFNKDFFVTWSPTHVNTSNDGRSRTLKLDQESGASFSSIQTFLFGQIDMKIKLIRGSSQGTVVAYYMSSDQPNRDEIDFEFLGNVNGQPYILQTNVYAEGLDNREERIHLWFDPAKDFHTYSILWNIHQIVFMVDQIPIRLYRNHGEKGVAYPRLQP 192          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH13_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 13 OS=Arabidopsis thaliana GN=XTH13 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.330e-48
Identity = 85/171 (49.71%), Postives = 116/171 (67.84%), Query Frame = 3
Query:  144 LFVGLLMVGLVSSAKFDDLYQTSWAFN--HVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            L + LL++  +S+  F D +  +W     ++   G  L   LD  SG+GF SK +YLFGK+ +++KLV G+SAGTVTA+Y+SS G   +E DFEFLGN TG+PY++ TNV+  G GNRE +  LWFDPT +FHTY++LWN   ++FLVD  PIRV  N E  G+ +PK QP
Sbjct:   11 LLLSLLLLISLSAGSFYDNFDITWGNGRANIVESGQLLTCTLDKISGSGFQSKKEYLFGKIDMKMKLVAGNSAGTVTAYYLSSKGETWDEIDFEFLGNVTGQPYVLHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQP 181          

HSP 2 Score: 31.9574 bits (71), Expect = 2.330e-48
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            PK   M +YSS+W ADDW
Sbjct:  177 PKSQPMKIYSSLWEADDW 194          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH12_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.037e-48
Identity = 86/171 (50.29%), Postives = 113/171 (66.08%), Query Frame = 3
Query:  144 LFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            L   LL++  V++  F D +  +W          G  L   LD  SG+GF SK +YLFGK+ ++IKLV G+SAGTVTA+Y+SS G   +E DFEFLGN TG+PY++ TNV+  G GNRE +  LWFDPT +FHTY++LWN   ++FLVD  PIRV  N E  G+ +PK QP
Sbjct:   12 LLASLLILIGVATGSFYDSFDITWGAGRANIFESGQLLTCTLDKTSGSGFQSKKEYLFGKIDMKIKLVPGNSAGTVTAYYLSSKGETWDEIDFEFLGNVTGQPYVIHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQP 182          

HSP 2 Score: 31.9574 bits (71), Expect = 3.037e-48
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            PK   M +YSS+W ADDW
Sbjct:  178 PKSQPMKIYSSLWEADDW 195          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 5.158e-48
Identity = 86/152 (56.58%), Postives = 107/152 (70.39%), Query Frame = 3
Query:  201 YQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            Y  +WAF+H +    G  L+L LD Y+G GF SK  YLFG  S+ IKL  GD+AG VTAFY+SS    H+E DFEFLGN TG+P ++QTNV+  G GNREQR+ LWFDP+K +HTYS+LWN  Q+VF VD  PIRV  N +  G+ FP +QP
Sbjct:   38 YVPTWAFDHQKQLNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNEHDEIDFEFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKNAKDLGVRFPFNQP 189          

HSP 2 Score: 30.4166 bits (67), Expect = 5.158e-48
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            P    M +YSS+WNADDW
Sbjct:  185 PFNQPMKLYSSLWNADDW 202          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 6.395e-48
Identity = 94/183 (51.37%), Postives = 131/183 (71.58%), Query Frame = 3
Query:  111 SSMVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHV-QYDGD-TLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPN-HNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            S  V  +L   LF  L    +   AKF+D ++ +W+  H+ Q DG   ++L LD  SG GFASK +YLFG+VS++IKL+ GDSAGTVTAFYM+SD  +  +E DFEFLGN +G+PY VQTNV+ +G G+REQR++LWFDP+++FH Y++ WN  ++VF VD  PIRV+ N E + +P+P+ QP
Sbjct:    8 SRNVFYTLSLCLFAALYQPVMSRPAKFEDDFRIAWSDTHITQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTDSVRDELDFEFLGNRSGQPYTVQTNVFAHGKGDREQRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVPIRVYKNNEARKVPYPRFQP 190          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.721e-48
Identity = 91/176 (51.70%), Postives = 114/176 (64.77%), Query Frame = 3
Query:  144 LFVGLLMVGLVSSAKFDDL-----YQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            L V   MV  +   K  D+     Y  +WAF+H +    G  L+L LD Y+G GF SK  YLFG  S+ IKL  GD+AG VTAFY+SS    H+E DFEFLGN TG+P ++QTNV+  G GNREQR+ LWFDP+K +HTYS+LWN  Q+VF VD  PIR   N +  G+ FP +QP
Sbjct:   15 LMVSSTMVMAIPPRKAIDVPFGRNYVPTWAFDHQKQFNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNEHDEIDFEFLGNRTGQPAILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSILWNMYQIVFFVDNIPIRTFKNAKDLGVRFPFNQP 190          

HSP 2 Score: 30.4166 bits (67), Expect = 6.721e-48
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            P    M +YSS+WNADDW
Sbjct:  186 PFNQPMKLYSSLWNADDW 203          
The following BLAST results are available for this feature:
BLAST of FC869162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH25_ARATH2.146e-4950.56Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_SOLLC6.192e-4956.58Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH21_ARATH1.371e-4850.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH22_ARATH1.372e-4849.15Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH10_ARATH2.198e-4850.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH13_ARATH2.330e-4849.71Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH12_ARATH3.037e-4850.29Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB5.158e-4856.58Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH7_ARATH6.395e-4851.37Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH4_ARATH6.721e-4851.70Xyloglucan endotransglucosylase/hydrolase protein ... [more]

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Properties
Property NameValue
Genbank descriptionC31009B10EF AbioticL1 Citrus clementina cDNA clone C31009B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869162 ID=FC869162; Name=FC869162; organism=Citrus clementina; type=EST; length=689bp
CTCGCCGGGGACAGATCAGCATTTCAAAGTATAAGCTTCAACTTCCCTCC
ACTTCACTGGGCCTGCTCTGCTCATTCGCTTACTTCCTCTCCCCGTTCTT
CTGTCTTCATTCTTCAATGGTTAAAATGTCTTTGATTTTCAGTCTGTTTG
TGGGTCTTTTAATGGTAGGTTTGGTCAGCTCAGCTAAGTTTGATGACCTT
TATCAAACAAGCTGGGCATTTAATCATGTTCAGTATGATGGGGACACTCT
CAAGCTTAACCTCGATAATTATTCCGGAGCTGGGTTTGCGTCAAAGAGCA
AGTATTTGTTTGGGAAAGTCTCCATCCAAATTAAACTTGTAGGGGGTGAC
TCTGCTGGAACTGTCACTGCCTTCTATATGTCATCAGACGGTCCAAATCA
CAACGAGTTCGATTTTGAGTTCCTGGGGAACACTACAGGAGAGCCATACT
TAGTCCAAACCAATGTTTATGTGAATGGTGTGGGCAACAGAGAGCAGAGA
CTTGACCTCTGGTTCGACCCAACAAAGGAATTTCATACCTATTCCCTCCT
TTGGAACCAGCGCCAAGTTGTATTTTTGGTGGATGAGACCCCAATTAGAG
TGCACACTAACTTGGAGCACAAAGGAATTCCCTTCCCAAAGGACCAGCCA
TGGGTGTGTACAGTTCAATATGGAATGCTGATGACTGGG
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