FC869162

Overview
NameFC869162
Unique NameFC869162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9467 contig Ccv1_Contig9467:1..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH8_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 8.762e-48
Identity = 90/187 (48.13%), Postives = 119/187 (63.64%), Query Frame = 3
Query:  117 MVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSD---GPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIP----FPKDQP 650
            M  + L  +  +    +    +  F+D +   W+ NH     DG+   L+LDN +G GF +K  Y FG  S+++KLVGGDSAG VTA+YM S+   GP  +E DFEFLGN TG+PY++QTNVY NG GNRE R  LWFDPTK++HTYS+LWN  Q+VF VD  PIRV+ N +   +P    FP  +P
Sbjct:    1 MTALFLFMTALMASSSIAATPTQSFEDNFNIMWSENHFTTSDDGEIWNLSLDNDTGCGFQTKHMYRFGWFSMKLKLVGGDSAGVVTAYYMCSENGAGPERDEIDFEFLGNRTGQPYIIQTNVYKNGTGNREMRHSLWFDPTKDYHTYSILWNNHQLVFFVDRVPIRVYKNSDK--VPNNDFFPNQKP 185          

HSP 2 Score: 29.6462 bits (65), Expect = 8.762e-48
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            P    M ++SSIWNADDW
Sbjct:  181 PNQKPMYLFSSIWNADDW 198          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.143e-47
Identity = 86/171 (50.29%), Postives = 117/171 (68.42%), Query Frame = 3
Query:  147 FVGLLMVGL-VSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            F  LL+    VS+A F+     +W      +  +G  L L+LD  SG+GF SK++YLFGK+ +QIKLV G+SAGTVT FY+ S+G   +E DFEFLGN +G+PY + TNVY  G G++EQ+  LWFDPT  FHTYS+LWN ++++  VD+TPIR   N E  G+ FPK++P
Sbjct:    9 FTTLLVAAFSVSAADFNTDVNVAWGNGRGKILNNGQLLTLSLDKSSGSGFQSKTEYLFGKIDMQIKLVPGNSAGTVTTFYLKSEGSTWDEIDFEFLGNMSGDPYTLHTNVYTQGKGDKEQQFHLWFDPTANFHTYSILWNPQRIILTVDDTPIREFKNYESLGVLFPKNKP 179          

HSP 2 Score: 32.3426 bits (72), Expect = 1.143e-47
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            PK   M +Y+S+WNADDW
Sbjct:  175 PKNKPMRMYASLWNADDW 192          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.687e-46
Identity = 91/181 (50.28%), Postives = 123/181 (67.96%), Query Frame = 3
Query:  114 SMVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            +M+  S I    +   M+  VS A F    + +W     Q   +GD L L+LD  SG+GF SK++YLFGK+ +QIKLV G+SAGTVTA+Y+ S G   +E DFEFLGN +G+PY + TNV+  G G+REQ+  LWFDPT +FHTYS+LWN ++++F VD TPIR   N+E +G  FPK+QP
Sbjct:    2 AMISYSTIVVALLASFMICSVS-ANFQRDVEITWGDGRGQITNNGDLLTLSLDKASGSGFQSKNEYLFGKIDMQIKLVAGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTQGKGDREQQFKLWFDPTSDFHTYSILWNPQRIIFSVDGTPIREFKNMESQGTLFPKNQP 181          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH14_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 14 OS=Arabidopsis thaliana GN=XTH14 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.576e-46
Identity = 84/179 (46.93%), Postives = 114/179 (63.69%), Query Frame = 3
Query:  123 KMSLIFSLFVGL-LMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            K  L+ SL + +   V   S+  F + +  +W         +G  L   LD  SG+GF SK +YLFGK+ +++KLV G+SAGTVTA+Y+SS G   +E DFEFLGN TG PY + TNV+  G G+RE +  LWFDPT +FHTY++ WN   ++FLVD  PIRV  N E  G+ +PK+QP
Sbjct:    7 KQPLLLSLLLAIGFFVVAASAGNFYESFDITWGNGRANIFENGQLLTCTLDKVSGSGFQSKKEYLFGKIDMKLKLVAGNSAGTVTAYYLSSKGTAWDEIDFEFLGNRTGHPYTIHTNVFTGGKGDREMQFRLWFDPTADFHTYTVHWNPVNIIFLVDGIPIRVFKNNEKNGVAYPKNQP 185          

HSP 2 Score: 31.9574 bits (71), Expect = 3.576e-46
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            PK   M +YSS+W ADDW
Sbjct:  181 PKNQPMRIYSSLWEADDW 198          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 5.985e-46
Identity = 87/175 (49.71%), Postives = 126/175 (72.00%), Query Frame = 3
Query:  135 IFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPN-HNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            IF+L   + +      A F + ++ +W+ +H++   DG  ++L LD  +G GFASK KYLFG+VS++IKL+ GDSAGTVTAFYM+SD     +E DFEFLGN +G+PY VQTN++ +G G+REQR++LWFDP+ ++HTY++LW+ + +VF VD+ PIR + N E K I +P  QP
Sbjct:   17 IFTLLTLMFIRVSARPATFVEDFKAAWSESHIRQMEDGKAIQLVLDQSTGCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTATVRDELDFEFLGNRSGQPYSVQTNIFAHGKGDREQRVNLWFDPSMDYHTYTILWSHKHIVFYVDDVPIREYKNNEAKNIAYPTSQP 191          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.497e-43
Identity = 75/137 (54.74%), Postives = 100/137 (72.99%), Query Frame = 3
Query:  240 GDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            G+ L L+LD +SG+GF S  ++L+GKV +Q+KLV G+SAGTVT FY+ S G   +E DFEFLGN +G PY + TNVY  G G++EQ+  LWFDPT +FHTY ++WN ++V+F +D  PIR   N E  G+PFPK QP
Sbjct:   49 GNLLSLSLDKFSGSGFQSHQEFLYGKVEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVDFHTYCIIWNPQRVIFTIDGIPIREFKNSEALGVPFPKHQP 185          

HSP 2 Score: 25.0238 bits (53), Expect = 3.497e-43
Identity = 8/18 (44.44%), Postives = 12/18 (66.67%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            PK   M +Y+S+W A+ W
Sbjct:  181 PKHQPMRLYASLWEAEHW 198          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.313e-42
Identity = 82/174 (47.13%), Postives = 110/174 (63.22%), Query Frame = 3
Query:  129 SLIFSLFVGLLMVGLVS-SAKFDDLYQTSWAFNHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQ 647
            +L+F L   L  +G     A F   +  +W  +H+  +G  L+L LD  +G+   SK  +LFG V + IKLV G+SAGTV A+Y+SS G  H+E DFEFLGN TG+PY + TN+Y  G GNREQ+   WF+PT  FH Y++ WN  +VV+ VD TPIRV  N E +GI +P  Q
Sbjct:    8 TLMFVLAAALATLGRTFVEADFSKNFIVTWGKDHMFMNGTNLRLVLDKSAGSAIKSKVAHLFGSVEMLIKLVPGNSAGTVAAYYLSSTGSTHDEIDFEFLGNATGQPYTIHTNLYAQGKGNREQQFRPWFNPTNGFHNYTIHWNPSEVVWFVDGTPIRVFRNYESEGIAYPNKQ 181          

HSP 2 Score: 28.1054 bits (61), Expect = 1.313e-42
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            P    M V++S+WNA+DW
Sbjct:  178 PNKQGMKVFASLWNAEDW 195          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH19_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 19 OS=Arabidopsis thaliana GN=XTH19 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.183e-40
Identity = 73/137 (53.28%), Postives = 95/137 (69.34%), Query Frame = 3
Query:  240 GDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            G  L L+LD  SG+GF S  ++L+GK  +Q+KLV G+SAGTVT FY+ S G   +E DFEFLGN +G PY + TNVY  G G++EQ+  LWFDPT  FHTY + WN ++++F VD  PIR   N E +G+PFP  QP
Sbjct:   44 GKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGSGDKEQQFHLWFDPTANFHTYCITWNPQRIIFTVDGIPIREFMNAESRGVPFPTKQP 180          

HSP 2 Score: 22.7126 bits (47), Expect = 1.183e-40
Identity = 7/18 (38.89%), Postives = 11/18 (61.11%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            P    M +Y+S+W A+ W
Sbjct:  176 PTKQPMRLYASLWEAEHW 193          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH18_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 18 OS=Arabidopsis thaliana GN=XTH18 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.540e-40
Identity = 74/138 (53.62%), Postives = 95/138 (68.84%), Query Frame = 3
Query:  237 DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            DG  L L+LD  SG+GF S  ++L+GK  +Q+KLV G+SAGTVT FY+ S G   +E DFEFLGN +G PY + TNVY  G G++EQ+  LWFDPT  FHTY + WN ++++F VD  PIR   N E  G+PFP  QP
Sbjct:   48 DGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNLSGHPYTLHTNVYTKGSGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNSESIGVPFPTKQP 185          

HSP 2 Score: 22.7126 bits (47), Expect = 1.540e-40
Identity = 7/18 (38.89%), Postives = 11/18 (61.11%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            P    M +Y+S+W A+ W
Sbjct:  181 PTKQPMRLYASLWEAEHW 198          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH17_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis thaliana GN=XTH17 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.007e-40
Identity = 74/138 (53.62%), Postives = 95/138 (68.84%), Query Frame = 3
Query:  237 DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            DG  L L+LD  SG+GF S  ++L+GK  +Q+KLV G+SAGTVT FY+ S G   +E DFEFLGN +G PY + TNVY  G G++EQ+  LWFDPT  FHTY + WN ++++F VD  PIR   N E  G+PFP  QP
Sbjct:   48 DGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNPEAIGVPFPTRQP 185          

HSP 2 Score: 22.7126 bits (47), Expect = 2.007e-40
Identity = 7/18 (38.89%), Postives = 11/18 (61.11%), Query Frame = 2
Query:  635 PKGPAMGVYSSIWNADDW 688
            P    M +Y+S+W A+ W
Sbjct:  181 PTRQPMRLYASLWEAEHW 198          
The following BLAST results are available for this feature:
BLAST of FC869162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH8_ARATH8.762e-4848.13Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH24_ARATH1.143e-4750.29Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH23_ARATH2.687e-4650.28Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH14_ARATH3.576e-4646.93Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH6_ARATH5.985e-4649.71Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH20_ARATH3.497e-4354.74Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH26_ARATH1.313e-4247.13Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH19_ARATH1.183e-4053.28Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH18_ARATH1.540e-4053.62Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH17_ARATH2.007e-4053.62Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC31009B10EF AbioticL1 Citrus clementina cDNA clone C31009B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869162 ID=FC869162; Name=FC869162; organism=Citrus clementina; type=EST; length=689bp
CTCGCCGGGGACAGATCAGCATTTCAAAGTATAAGCTTCAACTTCCCTCC
ACTTCACTGGGCCTGCTCTGCTCATTCGCTTACTTCCTCTCCCCGTTCTT
CTGTCTTCATTCTTCAATGGTTAAAATGTCTTTGATTTTCAGTCTGTTTG
TGGGTCTTTTAATGGTAGGTTTGGTCAGCTCAGCTAAGTTTGATGACCTT
TATCAAACAAGCTGGGCATTTAATCATGTTCAGTATGATGGGGACACTCT
CAAGCTTAACCTCGATAATTATTCCGGAGCTGGGTTTGCGTCAAAGAGCA
AGTATTTGTTTGGGAAAGTCTCCATCCAAATTAAACTTGTAGGGGGTGAC
TCTGCTGGAACTGTCACTGCCTTCTATATGTCATCAGACGGTCCAAATCA
CAACGAGTTCGATTTTGAGTTCCTGGGGAACACTACAGGAGAGCCATACT
TAGTCCAAACCAATGTTTATGTGAATGGTGTGGGCAACAGAGAGCAGAGA
CTTGACCTCTGGTTCGACCCAACAAAGGAATTTCATACCTATTCCCTCCT
TTGGAACCAGCGCCAAGTTGTATTTTTGGTGGATGAGACCCCAATTAGAG
TGCACACTAACTTGGAGCACAAAGGAATTCCCTTCCCAAAGGACCAGCCA
TGGGTGTGTACAGTTCAATATGGAATGCTGATGACTGGG
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