FC869162

Overview
NameFC869162
Unique NameFC869162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9467 contig Ccv1_Contig9467:1..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.685e-39
Identity = 80/181 (44.20%), Postives = 109/181 (60.22%), Query Frame = 3
Query:  135 IFSLFVGLLMV-----------GLVSSAKFDDLYQTSWAFNHVQ--YDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFP 638
            IFS+FV  L +           G+     F   Y  +W  +HV   + G+ + L +D  SG GF SK  Y  G   ++IK+  G++ G VTAFY++S G  H+E DFEFLGN  G+P  +QTN+++NG GNRE+R  LWF+PTK +HTY LLWN  Q+VF VD  PIRV+ N    G+ +P
Sbjct:    6 IFSVFVVTLWIIRVDARVFGGRGIEKFVTFGQNYIVTWGQSHVSTLHSGEEVDLYMDQSSGGGFESKDAYGSGLFEMRIKVPSGNTGGIVTAFYLTSKGGGHDEIDFEFLGNNNGKPVTLQTNLFLNGEGNREERFLLWFNPTKHYHTYGLLWNPYQIVFYVDNIPIRVYKN--ENGVSYP 184          

HSP 2 Score: 25.7942 bits (55), Expect = 3.685e-39
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 2
Query:  629 SLPKGPAMGVYSSIWNADDW 688
            S P  P M V +S+WN DDW
Sbjct:  182 SYPSKP-MQVEASLWNGDDW 200          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.256e-39
Identity = 79/181 (43.65%), Postives = 120/181 (66.30%), Query Frame = 3
Query:  126 MSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY---DGDT--LKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSS-DGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQP 650
            +S+  ++ V  L     ++A F + +    A +HV+    DG T  + L LD  SG+GF SK  YLFG+ S+Q+KLVGG+SAGTVT+FY+SS +G  H+E D EF+GN +G PY++ TNV+ NG G +E +  LWFDPT +FHTY ++WN + ++F VD+ P+R  T  ++  + +P+ +P
Sbjct:    7 LSVAAAVAVSWLAASSAAAAGFYEKFDVVGAGDHVRVVSDDGKTQQVALTLDRSSGSGFTSKDTYLFGEFSVQMKLVGGNSAGTVTSFYLSSGEGDGHDEIDIEFMGNLSGNPYVMNTNVWANGDGKKEHQFYLWFDPTADFHTYKIIWNPQNIIFQVDDVPVR--TFKKYDDLAYPQSKP 185          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.579e-38
Identity = 79/173 (45.66%), Postives = 108/173 (62.43%), Query Frame = 3
Query:  126 MSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFP 638
            +S++F +F          +  FD  Y  +W  +H+     G  ++L++D  SG+GF SKS Y  G   ++IKL   DSAG VTAFY++S G  H+E DFEFLGN  G+P  +QTNV+ NG G REQ+   WFDPT  FHTY +LWN  Q+VF VD+ PIRV  N++  G+ +P
Sbjct:   11 VSVLFLMFTANARARGRGAIDFDVNYVVTWGQDHILKLNQGKEVQLSMDYSSGSGFESKSHYGSGFFQMRIKLPPRDSAGVVTAFYLTSKGDTHDEVDFEFLGNRQGKPIAIQTNVFSNGQGGREQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYP 183          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.023e-37
Identity = 78/156 (50.00%), Postives = 105/156 (67.31%), Query Frame = 3
Query:  177 SSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFP 638
            S   FDD Y  +W  N+V     G  ++L+LD+ SG+GF SK+ Y  G   I+IK+   D++G VTAFY++S G  H+E DFEFLGN  G+   VQTNV+ NG GNREQ+L LWFDP+K+FHTY++LWN  Q+V  VD  P+RV  N   +G+ +P
Sbjct:   35 SKVGFDDNYVVTWGQNNVLKLNQGKEVQLSLDHSSGSGFESKNHYESGFFQIRIKVPPKDTSGVVTAFYLTSKGNTHDEVDFEFLGNKEGK-LAVQTNVFTNGKGNREQKLALWFDPSKDFHTYAILWNPYQIVLYVDNIPVRVFKNTTSQGMNYP 189          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 6.297e-32
Identity = 71/169 (42.01%), Postives = 102/169 (60.36%), Query Frame = 3
Query:  174 VSSAKFDDLYQTSWAFNHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPN---HNEFDFEFLGNTTGEPYLVQTNVYVNGVGNR-----EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQPWV 656
            V ++ FD  ++T W   H + + D + L LD  +G+GF S   Y  G     IKL  G +AG  T+ Y+S++  +   H+E D EFLG T G+PY +QTNV+V G G+R     E +  LWFDPT++FH Y++LWN  Q+VF VD+ PIR + N +++ I FP    WV
Sbjct:   34 VPTSPFDREFRTLWGSQHQRREQDVVTLWLDKSTGSGFKSLRPYRSGYFGASIKLQPGFTAGVDTSLYLSNNQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTY-NRKNEAI-FPTRPMWV 200          

HSP 2 Score: 25.7942 bits (55), Expect = 6.297e-32
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 2
Query:  650 MGVYSSIWNADDW 688
            M VY SIW+A DW
Sbjct:  198 MWVYGSIWDASDW 210          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.295e-30
Identity = 77/181 (42.54%), Postives = 103/181 (56.91%), Query Frame = 3
Query:  117 MVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGN--REQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFP 638
            +V MSL  SL  G  +  L    +FD+ Y   +   +  V  DG +++L LD  +G+GF S   YL G  S  IKL    SAG V AFY+S+      NH+E DFEFLGN  G  + +QTN+Y NG  +  RE+R +LWFDPT++FH YS+LW+   ++F VD  PIR        G  FP
Sbjct:    8 LVFMSLFTSLVSGFALQKL-PLIQFDEGYTQLFGDQNLIVHRDGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFP 187          

HSP 2 Score: 21.557 bits (44), Expect = 4.295e-30
Identity = 6/13 (46.15%), Postives = 9/13 (69.23%), Query Frame = 2
Query:  650 MGVYSSIWNADDW 688
            M +YS+IW+   W
Sbjct:  191 MSLYSTIWDGSKW 203          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.853e-30
Identity = 75/181 (41.44%), Postives = 102/181 (56.35%), Query Frame = 3
Query:  117 MVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGV--GNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFP 638
            +V MSL   L  G  +  L  ++ F++ Y   +   +  V  DG +++L LD  +G+GF S   YL G  S  IKL    +AG V AFYMS+      NH+E DFEFLGN   + + VQTN+Y NG     RE+R +LWFDPT++FH YS+LW+   ++F VD  PIR        G  FP
Sbjct:    8 LVFMSLFSGLVSGFALQNLPITS-FEESYTQLFGDKNLFVHQDGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFP 187          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.898e-29
Identity = 64/150 (42.67%), Postives = 92/150 (61.33%), Query Frame = 3
Query:  174 VSSAKFDDLYQTSWAFNHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPN---HNEFDFEFLGNTTGEPYLVQTNVYVNGVGN-----REQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIR 599
            V S  F   ++  W   H + D + L + LD  SG+GF S   +  G     IKL  G +AG +T+ Y+S++  +   H+E D EFLG T G+PY +QTNVY+ G G+     RE +  LWFDPTK+FH Y++LW+ R+++FLVD+ PIR
Sbjct:   38 VGSLNFYKGFRNLWGPQHQRMDQNALTIWLDRTSGSGFKSVKPFRSGYFGANIKLQPGYTAGVITSLYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIR 187          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.927e-28
Identity = 71/180 (39.44%), Postives = 101/180 (56.11%), Query Frame = 3
Query:  144 LFVGLLMVGLVSSAKFDDLYQTSWAFNHVQYDGD----------TLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNR--EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFP 638
            +F+ +L + L SS+ F +L   S+  +     GD          +++L LD Y+G+GF S + Y  G  S  IKL    +AG V AFY S+       H+E D EFLGN  G+P+  QTN+Y NG  +R  E+R  LWFDP+KEFH YS+LW   +++F VD+ PIR     +  G  +P
Sbjct:    9 IFILILCLCLRSSSAFTNLNTLSFEESLSPLFGDANLVRSPDDLSVRLLLDRYTGSGFISSNMYQHGFYSSMIKLPADYTAGVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIREVIRNDAMGADYP 188          

HSP 2 Score: 24.6386 bits (52), Expect = 2.927e-28
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 2
Query:  650 MGVYSSIWNADDW 688
            M +Y++IW+A DW
Sbjct:  192 MALYATIWDASDW 204          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.600e-28
Identity = 65/140 (46.43%), Postives = 86/140 (61.43%), Query Frame = 3
Query:  237 DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNR--EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPK 641
            D  +++L LD Y+G+GF S S Y  G  S  IKL G  +AG V AFY S+      +H+E D EFLGN  G+P+  QTN+Y NG  NR  E+R  LWFDP+KEFH YS+LW   +++F VD+ PIR     E     +P+
Sbjct:   58 DDRSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQ 197          
The following BLAST results are available for this feature:
BLAST of FC869162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH3_ARATH3.685e-3944.20Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH8_ORYSJ9.256e-3943.65Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH2_ARATH1.579e-3845.66Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_ARATH1.023e-3750.00Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH6.297e-3242.01Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH4.295e-3042.54Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH7.853e-3041.44Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH3.898e-2942.67Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH30_ARATH2.927e-2839.44Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH9.600e-2846.43Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC31009B10EF AbioticL1 Citrus clementina cDNA clone C31009B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869162 ID=FC869162; Name=FC869162; organism=Citrus clementina; type=EST; length=689bp
CTCGCCGGGGACAGATCAGCATTTCAAAGTATAAGCTTCAACTTCCCTCC
ACTTCACTGGGCCTGCTCTGCTCATTCGCTTACTTCCTCTCCCCGTTCTT
CTGTCTTCATTCTTCAATGGTTAAAATGTCTTTGATTTTCAGTCTGTTTG
TGGGTCTTTTAATGGTAGGTTTGGTCAGCTCAGCTAAGTTTGATGACCTT
TATCAAACAAGCTGGGCATTTAATCATGTTCAGTATGATGGGGACACTCT
CAAGCTTAACCTCGATAATTATTCCGGAGCTGGGTTTGCGTCAAAGAGCA
AGTATTTGTTTGGGAAAGTCTCCATCCAAATTAAACTTGTAGGGGGTGAC
TCTGCTGGAACTGTCACTGCCTTCTATATGTCATCAGACGGTCCAAATCA
CAACGAGTTCGATTTTGAGTTCCTGGGGAACACTACAGGAGAGCCATACT
TAGTCCAAACCAATGTTTATGTGAATGGTGTGGGCAACAGAGAGCAGAGA
CTTGACCTCTGGTTCGACCCAACAAAGGAATTTCATACCTATTCCCTCCT
TTGGAACCAGCGCCAAGTTGTATTTTTGGTGGATGAGACCCCAATTAGAG
TGCACACTAACTTGGAGCACAAAGGAATTCCCTTCCCAAAGGACCAGCCA
TGGGTGTGTACAGTTCAATATGGAATGCTGATGACTGGG
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