FC869162

Overview
NameFC869162
Unique NameFC869162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9467 contig Ccv1_Contig9467:1..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.638e-27
Identity = 58/120 (48.33%), Postives = 81/120 (67.50%), Query Frame = 3
Query:  249 LKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHT 608
            L+L LD  SG+GF S+  Y  G  +++IK     S G +T+FY+ S    H+E  F+ LG   G PYL+ TN+Y+ G G ++QR  LWFDPTK++H+YS LWN  Q+VF VD+TPIRV++
Sbjct:   45 LQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSRHDELCFQILGKN-GPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYS 163          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.061e-26
Identity = 60/150 (40.00%), Postives = 88/150 (58.67%), Query Frame = 3
Query:  177 SSAKFDDLYQTSWAFNHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGP---NHNEFDFEFLGNTTGEPYLVQTNVYVNGVGN--REQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTN 611
            S    ++ +   +  +++Q +G   KL LD  SGAG  SK+KY +G  S ++KL  G ++G V AFY+S+      +H+E D E LG +  + + +QTNVY NG     RE++   WFDPT+ FH Y+L+WN    VFLVD  P+R   N
Sbjct:   39 SKIAIENGFSRRFGAHNIQVNGSLAKLTLDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYLSNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPN 188          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: GUB_ORPSP (Beta-glucanase OS=Orpinomyces sp. (strain PC-2) GN=licA PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.488e-12
Identity = 43/141 (30.50%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  195 DLYQTSWAFNHVQYDGDTLKLNLDN----YSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYM---SSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPI 596
            +++   W  N+ +++   LKL +D     Y+   + +K+ Y +G   + +K +   + G V++F+     SDG   +E D EFLG  T +   VQ N Y NG G+ E    L FD ++ FHTY   W +  + + VD T +
Sbjct:   59 EMFNCRWTPNNDKFENGKLKLTIDRDGSGYTCGEYRTKNYYGYGMFQVNMKPI--KNPGVVSSFFTYTGPSDGTKWDEIDIEFLGYDTTK---VQFNYYTNGQGHHEHIHYLGFDASQGFHTYGFFWARNSITWYVDGTAV 194          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: GUB_PAEPO (Beta-glucanase OS=Paenibacillus polymyxa GN=gluB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = 3
Query:  198 LYQTSWAFNHVQYDGD-TLKLNL-----DNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNH----NEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVD 584
            ++  +W  N+V +  D  LKL+L     + +    + S + Y +G   + +K     + G V++F+  + GP+H    +E D EFLG  T +   VQ N Y NGVG  E+ ++L FD +  FHTY+  W    + + VD
Sbjct:   53 MFNCTWRANNVNFTNDGKLKLSLTSPANNKFDCGEYRSTNNYGYGLYEVSMK--PAKNTGIVSSFFTYT-GPSHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKIINLGFDASTSFHTYAFDWQPGYIKWYVD 185          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: GUB_PAEMA (Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 3
Query:  198 LYQTSWAFNHVQYDGD-TLKLNL-----DNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNH----NEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVD 584
            ++  +W  N+V +  D  LKL L     + +  A + S + Y +G   + +K     + G V++F+  + GP H    +E D EFLG  T +   VQ N Y NGVG  E+ + L FD +K FHTY+  W    + + VD
Sbjct:   52 VFNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYT-GPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVD 184          
BLAST of FC869162 vs. ExPASy Swiss-Prot
Match: GUB_CLOTH (Beta-glucanase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=licB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 44/138 (31.88%), Postives = 66/138 (47.83%), Query Frame = 3
Query:  198 LYQTSWAFNHVQYDGDTLKLNLDNYSGAGFASKS-----KYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHN----EFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVD 584
            ++   W  + V +    + L LD   G  +  KS     K  FG    ++++    + G V++F+  + GP+ N    E D EFLG  T +   VQ N Y NGVG  E   +L FD +++FHTY   W    + F VD
Sbjct:   59 VFNCVWKPSQVTFSNGKMILTLDREYGGSYPYKSGEYRTKSFFGYGYYEVRMKAAKNVGIVSSFFTYT-GPSDNNPWDEIDIEFLGKDTTK---VQFNWYKNGVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVD 192          
The following BLAST results are available for this feature:
BLAST of FC869162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH11_ARATH1.638e-2748.33Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH33_ARATH1.061e-2640.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_ORPSP1.488e-1230.50Beta-glucanase OS=Orpinomyces sp. (strain PC-2) GN... [more]
GUB_PAEPO4.787e-1131.65Beta-glucanase OS=Paenibacillus polymyxa GN=gluB P... [more]
GUB_PAEMA6.252e-1133.09Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2[more]
GUB_CLOTH6.252e-1131.88Beta-glucanase OS=Clostridium thermocellum (strain... [more]

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Properties
Property NameValue
Genbank descriptionC31009B10EF AbioticL1 Citrus clementina cDNA clone C31009B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869162 ID=FC869162; Name=FC869162; organism=Citrus clementina; type=EST; length=689bp
CTCGCCGGGGACAGATCAGCATTTCAAAGTATAAGCTTCAACTTCCCTCC
ACTTCACTGGGCCTGCTCTGCTCATTCGCTTACTTCCTCTCCCCGTTCTT
CTGTCTTCATTCTTCAATGGTTAAAATGTCTTTGATTTTCAGTCTGTTTG
TGGGTCTTTTAATGGTAGGTTTGGTCAGCTCAGCTAAGTTTGATGACCTT
TATCAAACAAGCTGGGCATTTAATCATGTTCAGTATGATGGGGACACTCT
CAAGCTTAACCTCGATAATTATTCCGGAGCTGGGTTTGCGTCAAAGAGCA
AGTATTTGTTTGGGAAAGTCTCCATCCAAATTAAACTTGTAGGGGGTGAC
TCTGCTGGAACTGTCACTGCCTTCTATATGTCATCAGACGGTCCAAATCA
CAACGAGTTCGATTTTGAGTTCCTGGGGAACACTACAGGAGAGCCATACT
TAGTCCAAACCAATGTTTATGTGAATGGTGTGGGCAACAGAGAGCAGAGA
CTTGACCTCTGGTTCGACCCAACAAAGGAATTTCATACCTATTCCCTCCT
TTGGAACCAGCGCCAAGTTGTATTTTTGGTGGATGAGACCCCAATTAGAG
TGCACACTAACTTGGAGCACAAAGGAATTCCCTTCCCAAAGGACCAGCCA
TGGGTGTGTACAGTTCAATATGGAATGCTGATGACTGGG
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