FC869163
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23 Identity = 60/135 (44.44%), Postives = 80/135 (59.26%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNG 680 WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+ WAMLGA G + PE + G G EAVWFK GA + L+Y G + I + A+ A +++L+G E YR+ G Sbjct: 62 WYGPDRVMYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGG 192
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23 Identity = 61/135 (45.19%), Postives = 79/135 (58.52%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 680 WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F+K + E+IH WAMLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YR+ G Sbjct: 49 WYGPDRPKYLGPF---SDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGG 179
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23 Identity = 61/135 (45.19%), Postives = 79/135 (58.52%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 680 WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+ WAMLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YRI G Sbjct: 46 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG 176
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23 Identity = 60/136 (44.12%), Postives = 78/136 (57.35%), Query Frame = 3 Query: 282 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNG 680 ++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHA WAMLGA G PE K G G EAVWFK GA + L+Y G + N+V +++L+G E YR+ G Sbjct: 35 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGG 167
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23 Identity = 60/135 (44.44%), Postives = 79/135 (58.52%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 680 WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+ WAMLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +++L+G E YRI G Sbjct: 47 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGG 177
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23 Identity = 60/135 (44.44%), Postives = 79/135 (58.52%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 680 WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+ WAMLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YRI G Sbjct: 39 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 169
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23 Identity = 60/135 (44.44%), Postives = 77/135 (57.04%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 680 WYGPDR +L E P YLTGE P DYG+D GLS P+ F+K + E+IH WAMLGA G + PE F + G G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G Sbjct: 51 WYGPDRVKYLGPF---SGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 181
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23 Identity = 62/135 (45.93%), Postives = 80/135 (59.26%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 680 WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+ WAMLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YRI G Sbjct: 45 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGG 175
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23 Identity = 62/135 (45.93%), Postives = 80/135 (59.26%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 680 WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+ WAMLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YRI G Sbjct: 49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGG 179
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23 Identity = 60/135 (44.44%), Postives = 77/135 (57.04%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 680 WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH WAMLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YRI G Sbjct: 51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 181 The following BLAST results are available for this feature:
BLAST of FC869163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC869163 ID=FC869163; Name=FC869163; organism=Citrus clementina; type=EST; length=705bpback to top |