FC869163

Overview
NameFC869163
Unique NameFC869163
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869163_ssr39 microsatellite FC869163_ssr39:39..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9360 contig Ccv1_Contig9360:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.287e-22
Identity = 58/135 (42.96%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAV-IAEIVLVGGAEYYRITNG 680
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH  WAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + A+  A++VL+G  E YR+  G
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGG 179          
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.287e-22
Identity = 57/135 (42.22%), Postives = 78/135 (57.78%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 680
            W+GPD   +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+ WAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YRI  G
Sbjct:   12 WHGPDGVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 142          
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.211e-22
Identity = 59/135 (43.70%), Postives = 75/135 (55.56%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 680
            WYG DR  FL        E P YL GE  GDYG+D  GLS  P+ F++ +  E+IHA WAMLGA G + PE   K G   G EAVWFK GA +     L+Y G    +    + A+ A ++VL+G  E YR+  G
Sbjct:   52 WYGADRPKFLGPF---SGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 182          
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.211e-22
Identity = 58/135 (42.96%), Postives = 79/135 (58.52%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 680
            WYG DR ++L  G    S  P YL+GE PGDYG+D  GLS  P+ F+K +  E+IH+ WAMLGA G + PE   K G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+  G
Sbjct:   49 WYGSDRPLYL--GPFSGSP-PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGG 179          
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 58/135 (42.96%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 680
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH  WAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YR+  G
Sbjct:   21 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGG 151          
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.401e-21
Identity = 60/138 (43.48%), Postives = 79/138 (57.25%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNG 680
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH  WAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAIWACQVVLMGFVEGYRVGGG 179          
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.401e-21
Identity = 59/135 (43.70%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 680
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH  WAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + AV A ++VL+G  E YR+  G
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGG 179          
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 57/132 (43.18%), Postives = 76/132 (57.58%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 671
            WYGP+R  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH  WAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+
Sbjct:   51 WYGPNRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178          
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 62/136 (45.59%), Postives = 78/136 (57.35%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 680
            WYGPDR    P+ L   SE  P YLTGE PGDYG+D   +S  P+ F+K +  E+IH  WAMLGA G + PE   K G   G EAVWFK GA +     L+Y G    I    + A+ A ++VL+G  E YR+  G
Sbjct:   50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFG-EAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGG 180          
BLAST of FC869163 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 59/136 (43.38%), Postives = 78/136 (57.35%), Query Frame = 3
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAGWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL 683
            WYGPDR  +L       ++ P YL GE PGDYG+D  GLS  P+ F+K +A E+IH  WAMLGA G I PE   K+      E VWFK G+ +     L+Y G    +    + AV+  ++VL+G  E +RI NGL
Sbjct:   47 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI-NGL 178          
The following BLAST results are available for this feature:
BLAST of FC869163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB26_PETSP6.287e-2242.96Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB21_PEA6.287e-2242.22Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2_PHYPA8.211e-2243.70Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_POLMU8.211e-2242.96Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB25_SOLLC1.072e-2142.96Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB24_SOLLC1.401e-2143.48Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC1.401e-2143.70Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_NICPL2.389e-2143.18Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB21_PINTH2.389e-2145.59Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_SOLLC3.120e-2143.38Chlorophyll a-b binding protein 13, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31009B12EF AbioticL1 Citrus clementina cDNA clone C31009B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869163 ID=FC869163; Name=FC869163; organism=Citrus clementina; type=EST; length=705bp
GAGACAAATCTTCACCATTTCTCTTCTCTAAACAAAGAAGCAGCAGCAGC
AACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTC
CATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTG
TTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTT
GCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGT
CGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACC
GAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAG
TACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTCT
CAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTC
ATGCCGGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCC
TTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGAC
TGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAGAACA
TCCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGTAGGT
GGTGCTGAATATTATAGAATCACCAACGGTTTGGNTATTGTCTTTGTCCT
GCTTC
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