FC869174

Overview
NameFC869174
Unique NameFC869174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14135 contig Ccv1_Contig14135:57..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5A_XENLA (60S ribosomal protein L5-A OS=Xenopus laevis GN=rpl5-A PE=2 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 4.938e-66
Identity = 123/208 (59.13%), Postives = 151/208 (72.60%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTLM 669
            K  K+KAYFKRYQVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DI  QI  A I GD+++ +AYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    +D  YEG VE TG++Y+VE  +     F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ + EVHR +I+  +VA YMR LM
Sbjct:    5 KVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGIKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDEYNVESIDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNVAEYMRLLM 212          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5_AEDAE (60S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 6.449e-66
Identity = 124/207 (59.90%), Postives = 153/207 (73.91%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTL 666
            K  K+K YFKRYQV+++RRREGKTDY AR RLI QDKNKYNTPKYR +VR +N+DIT QI  A I GD ++ +AY+HELPRYG++VGLTNYAAAYCTGLL+ARR+L+ L +D  Y G  + TGE+Y VEP ++    FR  LDVGL +TTTG R+F            IPHS KRF G+S ++K  +AEVHR +I+  HVA YMRTL
Sbjct:    5 KVVKNKQYFKRYQVRFRRRREGKTDYYARKRLIFQDKNKYNTPKYRLIVRLSNRDITCQIAYARIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYTGCTDVTGEEYLVEPVDDGPGAFRCYLDVGLARTTTGARIFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEVHRAHIFGQHVADYMRTL 211          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5B_XENLA (60S ribosomal protein L5-B OS=Xenopus laevis GN=rpl5-B PE=2 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 6.449e-66
Identity = 122/208 (58.65%), Postives = 151/208 (72.60%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTLM 669
            K  K+KAYFKRYQVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DI  QI  A I GD+++ +AYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    +D  YEG VE TG++Y+VE  +     F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ + EVHR +I+  ++A YMR LM
Sbjct:    5 KVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDEYNVESVDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNIAEYMRLLM 212          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5_HUMAN (60S ribosomal protein L5 OS=Homo sapiens GN=RPL5 PE=1 SV=3)

HSP 1 Score: 249.98 bits (637), Expect = 8.423e-66
Identity = 125/208 (60.10%), Postives = 152/208 (73.08%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTLM 669
            K  K+KAYFKRYQVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DI  QI  A I GD+++ +AYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE TG++Y+VE  + +   F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ +AEVHR +I   +VA YMR LM
Sbjct:    5 KVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLM 212          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5_HELAN (60S ribosomal protein L5 OS=Helianthus annuus GN=RPL5A PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.423e-66
Identity = 126/207 (60.87%), Postives = 154/207 (74.40%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTL 666
            K  K+K YFKRYQVK+KRRREGKTDY AR RLI QDKNKYNTPKYR VVRF+N+DIT Q+  + I GD +L +AYAHELP+YG++VGLTNYAAAYCTGLLLAR++L  L +D  Y G+ E TGE+++V+P E+    FR  LDVGL++TTTG RVF            I HS KRF GF  +SK+ +A+VHR +I+  HVA YMR L
Sbjct:    5 KVVKNKQYFKRYQVKFKRRREGKTDYFARKRLIAQDKNKYNTPKYRLVVRFSNRDITCQVAYSRIEGDKILCAAYAHELPQYGVKVGLTNYAAAYCTGLLLARKLLSQLGLDKLYIGSTEVTGEEFNVKPVEDGPGAFRCYLDVGLMRTTTGARVFGAMKGAVDGGLNILHSTKRFPGFDSESKEFNADVHRQHIFGQHVAEYMRQL 211          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5_CHICK (60S ribosomal protein L5 OS=Gallus gallus GN=RPL5 PE=2 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.100e-65
Identity = 124/208 (59.62%), Postives = 152/208 (73.08%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTLM 669
            K  K+KAYFKRYQVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DI  QI  A I GD+++ +AYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    +D  YEG VE TG++Y+VE  + +   F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ +AEVHR +I   +VA YMR LM
Sbjct:    5 KVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKIYEGQVEVTGDEYNVESVDGKPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLM 212          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5_DROME (60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=1 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 1.437e-65
Identity = 125/207 (60.39%), Postives = 153/207 (73.91%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTL 666
            K  K+K YFKRYQVK++RRREGKTDY AR RL  QDKNKYNTPKYR +VR +NKDIT QI  A I GD V+ +AY+HELP+YG++VGLTNYAAAYCTGLL+ARRVL  L +D+ Y G  E TGE+++VEP ++    FR  LDVGL +TTTG RVF            IPHS KRF G+S ++K  +A+VHR +I+  HVA YMR+L
Sbjct:    5 KVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDKNKYNTPKYRLIVRLSNKDITVQIAYARIEGDRVVCAAYSHELPKYGIQVGLTNYAAAYCTGLLVARRVLNKLGLDSLYAGCTEVTGEEFNVEPVDDGPGAFRCFLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAETKSFNADVHRAHIFGQHVADYMRSL 211          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5_BOMMO (60S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.876e-65
Identity = 122/207 (58.94%), Postives = 153/207 (73.91%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTL 666
            K  K+K YFKRYQVK+KRRREGKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+T Q+  + I GD ++ +AY+HELPRYG++VGLTNYAAAY TGLLLARR+L+ L +D  Y G  + TG++Y+VEP +N    FR  LDVGL +TTTG RVF            +PHS KRF G+  +SK+ +AEVHR +I+  HVA YMR+L
Sbjct:    5 KVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGLLLARRLLQRLGLDTLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGRRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSL 211          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5_MACFA (60S ribosomal protein L5 OS=Macaca fascicularis GN=RPL5 PE=2 SV=3)

HSP 1 Score: 248.44 bits (633), Expect = 2.451e-65
Identity = 124/208 (59.62%), Postives = 152/208 (73.08%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTLM 669
            K  K+KAYFKRYQVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DI  QI  A I GD+++ +AYAH+LP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE TG++Y+VE  + +   F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ +AEVHR +I   +VA YMR LM
Sbjct:    5 KVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHKLPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLM 212          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5_ANOGA (60S ribosomal protein L5 OS=Anopheles gambiae GN=RpL5 PE=2 SV=3)

HSP 1 Score: 248.44 bits (633), Expect = 2.451e-65
Identity = 124/207 (59.90%), Postives = 152/207 (73.43%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPT-ENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTL 666
            K  K+K YFKRYQV+++RRREGKTDY AR RLI QDKNKYNTPK+R +VR +N+DIT QI  A I GD ++ +AY+HELPRYG++VGLTNYAAAYCTGLL+ARR+L+ L +D  Y G  + TGE+Y VEP  E    FR  LDVGL +TTTG RVF            IPHS KRF G+S ++K  +AE+HR +I+  HVA YMRTL
Sbjct:    5 KVVKNKQYFKRYQVRFRRRREGKTDYYARKRLIFQDKNKYNTPKFRLIVRLSNRDITCQIAYARIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVEPVDEGPAAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEMHRDHIFGLHVANYMRTL 211          
The following BLAST results are available for this feature:
BLAST of FC869174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
RL5A_XENLA4.938e-6659.1360S ribosomal protein L5-A OS=Xenopus laevis GN=rp... [more]
RL5_AEDAE6.449e-6659.9060S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 ... [more]
RL5B_XENLA6.449e-6658.6560S ribosomal protein L5-B OS=Xenopus laevis GN=rp... [more]
RL5_HUMAN8.423e-6660.1060S ribosomal protein L5 OS=Homo sapiens GN=RPL5 P... [more]
RL5_HELAN8.423e-6660.8760S ribosomal protein L5 OS=Helianthus annuus GN=R... [more]
RL5_CHICK1.100e-6559.6260S ribosomal protein L5 OS=Gallus gallus GN=RPL5 ... [more]
RL5_DROME1.437e-6560.3960S ribosomal protein L5 OS=Drosophila melanogaste... [more]
RL5_BOMMO1.876e-6558.9460S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE... [more]
RL5_MACFA2.451e-6559.6260S ribosomal protein L5 OS=Macaca fascicularis GN... [more]
RL5_ANOGA2.451e-6559.9060S ribosomal protein L5 OS=Anopheles gambiae GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC31009C12EF AbioticL1 Citrus clementina cDNA clone C31009C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869174 ID=FC869174; Name=FC869174; organism=Citrus clementina; type=EST; length=670bp
TCGAACTCTGCTTCTTCTACACTTTGAGCTTCAGCAATGGCCTTTGCCAA
AGCTCAAAAGTCAAAAGCTTACTTTAAGCGATATCAAGTTAAGTACAAGA
GAAGGCGAGAGGGAAAGACTGACTATCGGGCTAGGATTCGCCTGATCAAC
CAAGATAAAAACAAGTACAACACGCCAAAGTATCGGTTTGTTGTGCGATT
CACCAACAAAGATATCACTGCACAAATTATATCTGCCAGCATAGCCGGGG
ATATAGTCCTTGCATCTGCTTATGCCCATGAGCTTCCCCGTTATGGTCTT
GAGGTGGGCCTCACTAATTATGCAGCAGCTTATTGCACTGGACTCCTCTT
GGCCCGCCGAGTCCTGAAAATGCTTGAGATGGATGCTGAGTATGAGGGGA
ACGTTGAGGCAACAGGAGAGGACTATTCAGTTGAGCCAACTGAGAACAGG
AGGCCTTTCCGTGCCCTGCTTGATGTTGGTCTTGTGAAAACAACTACTGG
TAACCGTGTCTTTGGCGCTCTTAAGGGTGCATTGGATGGTGGACTTGATA
TCCCTCACAGTGAGAAGAGATTTGCTGGATTCAGTAAGGATAGTAAGCAA
CTTGACGCTGAAGTTCACCGTNAATACATCTATTGTGGTCATGTCGCTGC
CTACATGAGGACTTTGATGG
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