FC869174

Overview
NameFC869174
Unique NameFC869174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5_DICDI (60S ribosomal protein L5 OS=Dictyostelium discoideum GN=rpl5 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.178e-59
Identity = 112/207 (54.11%), Postives = 151/207 (72.95%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTL 666
            K  K+KAY+ RYQV+++RRREGKTDY+ R RLI QDKNKYN+PKYR V R TN D+ AQ++ + I GD VL +AYAHELPR+G++VGLTNYA+ Y TGLLLARR+L  L++   Y+G  +  G+ + V+P +++ RPF+A LDVGL +T+TG +VF            +PH E RFAG++ +SK+L+AE  R YI+  HVA+YM  L
Sbjct:    5 KVVKTKAYYSRYQVQFRRRREGKTDYQQRHRLITQDKNKYNSPKYRLVARITNTDVIAQVVYSKIVGDFVLCAAYAHELPRFGVKVGLTNYASCYATGLLLARRLLAKLKLADLYKGAEKVDGKVFLVKPVDDKPRPFKANLDVGLARTSTGAKVFAVLKGAVDGGIYVPHGETRFAGYNAESKKLNAETLRGYIFGKHVASYMTLL 211          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5_OIKDI (60S ribosomal protein L5 OS=Oikopleura dioica GN=RPL5 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.009e-59
Identity = 118/204 (57.84%), Postives = 142/204 (69.61%), Query Frame = 1
Query:   58 KSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGED-YSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTL 666
            K+KAYFKRYQ K+KRRREGKTDY AR RL  QDKNKYNTPKYR VVR TNKDI AQI  A + GD+++ SAYAHELPRYG+ VGLTNY+AAY TGLL+ RRVL+   +D+ YEG +E  G++ Y       +  FR  LD GL +T+TG R+F            IPHS KRF GF+ D K L+AE H+ +I+ GHV  YM  L
Sbjct:   18 KNKAYFKRYQPKFKRRREGKTDYFARKRLCVQDKNKYNTPKYRLVVRVTNKDIIAQIAYARLQGDVIVTSAYAHELPRYGVSVGLTNYSAAYATGLLIGRRVLQKFGLDSMYEGQIEVDGDEFYEEADAAEKASFRCYLDTGLARTSTGARIFGVLKGCADAGIDIPHSPKRFPGFA-DGK-LNAEAHKDHIFGGHVGDYMEKL 219          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5_YEAST (60S ribosomal protein L5 OS=Saccharomyces cerevisiae GN=RPL5 PE=1 SV=3)

HSP 1 Score: 224.172 bits (570), Expect = 4.949e-58
Identity = 114/207 (55.07%), Postives = 143/207 (69.08%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTL 666
            K  KS AY  R+Q  ++RRREGKTDY  R RL+ Q K KYNTPKYR VVRFTNKDI  QIIS++I GD+VLA+AY+HELPRYG+  GLTN+AAAY TGLL+ARR L+ L +D  Y+G  E  GE    E  E+  RPF+  LD+GL +TTTG RVF            +PHSE RF G+  +++++D E+ R YI+ GHV+ YM  L
Sbjct:    5 KDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQRLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEEL 211          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5B_SCHPO (60S ribosomal protein L5-B OS=Schizosaccharomyces pombe GN=rpl5b PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.632e-56
Identity = 114/208 (54.81%), Postives = 140/208 (67.31%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTLM 669
            KA KS  YF RYQ KY+RRREGKTDY AR RLI Q KNKYN PKYR VVRF+N+ +T QI+S+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + +  +YEG  E  GE    E  E+  RPF+  LDVGL +T+TG+RVF            IPHS  RF GF  ++++LD E  R YIY GHVA YM  L+
Sbjct:    5 KAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLI 212          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5A_SCHPO (60S ribosomal protein L5-A OS=Schizosaccharomyces pombe GN=rpl5a PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 4.632e-56
Identity = 114/208 (54.81%), Postives = 140/208 (67.31%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTLM 669
            KA KS  YF RYQ KY+RRREGKTDY AR RLI Q KNKYN PKYR VVRF+N+ +T QI+S+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + +  +YEG  E  GE    E  E+  RPF+  LDVGL +T+TG+RVF            IPHS  RF GF  ++++LD E  R YIY GHVA YM  L+
Sbjct:    5 KAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLI 212          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL5_PIG (60S ribosomal protein L5 (Fragment) OS=Sus scrofa GN=RPL5 PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.709e-42
Identity = 83/120 (69.17%), Postives = 97/120 (80.83%), Query Frame = 1
Query:   49 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVE 408
            K  K+KAYFKRYQVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DI  QI  A I GD+++ +AYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    M   Y G VE
Sbjct:    5 KVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMXKIYGGQVE 124          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_METHJ (50S ribosomal protein L18P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.485e-17
Identity = 63/163 (38.65%), Postives = 81/163 (49.69%), Query Frame = 1
Query:   79 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 567
            RY V ++RRREG+T+Y AR RL+   K        R VVR TN+ I  QII+A + GD    +A + EL ++G E  L N  AAY TG+LLA R LK     A  EG                     A+LD+GL + T G RVF            IPH+E+
Sbjct:    6 RYFVAFRRRREGRTNYHARTRLVVATKP-------RMVVRKTNRHIICQIITAHMEGDRTHVAANSSELRKFGYEGSLNNTPAAYLTGMLLAVRALK-----AGQEG---------------------AILDIGLHRATPGARVFAALKGAVEAGFDIPHNEE 135          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_METS3 (50S ribosomal protein L18P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 65/195 (33.33%), Postives = 90/195 (46.15%), Query Frame = 1
Query:   82 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTL 666
            Y+V ++RRREGKTDY AR++L++ DK+       R VVR +N   T Q+I  +  GDI LASA + +L  YG   G +N +A Y TG L A+R L              A G D             A+LD+GL     G++VF            IP+ E        D  +++ E         HVA Y  +L
Sbjct:    7 YKVPFRRRREGKTDYAARMKLVDYDKS-------RLVVRLSNAHATVQVIDYAPEGDITLASAVSKQLANYGYLGGASNTSAVYLTGYLCAKRAL--------------AKGVD------------SAILDIGLKSAIKGSKVFAALKGAVDAGLDIPYGE----AVLPDESRINGE---------HVANYAESL 155          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_METTH (50S ribosomal protein L18P OS=Methanobacterium thermoautotrophicum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.230e-17
Identity = 59/166 (35.54%), Postives = 81/166 (48.80%), Query Frame = 1
Query:   67 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSE 564
            A+  RY++ ++RRREGKTDYRAR +++        T K R VVR T   + AQII+  + GD  L SA++ +L + G   G +N AAAY TG L  +R LK        EG  E                  A+LD+GL     G++VF            +PH E
Sbjct:    2 AHGPRYKLAFRRRREGKTDYRARYKMVE-------TGKSRLVVRITTYHVIAQIINVGMNGDETLVSAHSKQLQKMGWLGGTSNTAAAYLTGYLCGKRALK--------EGIEE------------------AVLDIGLRPAIRGSKVFAALKGAVDAGLNVPHGE 134          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_METB6 (50S ribosomal protein L18P OS=Methanoregula boonei (strain 6A8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 57/162 (35.19%), Postives = 75/162 (46.30%), Query Frame = 1
Query:   79 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSE 564
            RY V ++RRREG+TDY  R +L+  D         R VVR TN+ I  Q+++A + GD  L SA + EL +YG      N  AAY TGLL A +  K               G+D             A+LD+GL + T G RVF            IP+ E
Sbjct:    6 RYLVAFRRRREGRTDYYQRTKLVVADAP-------RMVVRRTNRHIIVQLVTAEMEGDKTLVSANSAELEKYGYTGATANTPAAYLTGLLFAAKAKK--------------AGQD------------SAILDIGLNRATPGARVFAALKGAVDGGLEIPYGE 134          
The following BLAST results are available for this feature:
BLAST of FC869174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
RL5_DICDI1.178e-5954.1160S ribosomal protein L5 OS=Dictyostelium discoide... [more]
RL5_OIKDI2.009e-5957.8460S ribosomal protein L5 OS=Oikopleura dioica GN=R... [more]
RL5_YEAST4.949e-5855.0760S ribosomal protein L5 OS=Saccharomyces cerevisi... [more]
RL5B_SCHPO4.632e-5654.8160S ribosomal protein L5-B OS=Schizosaccharomyces ... [more]
RL5A_SCHPO4.632e-5654.8160S ribosomal protein L5-A OS=Schizosaccharomyces ... [more]
RL5_PIG1.709e-4269.1760S ribosomal protein L5 (Fragment) OS=Sus scrofa ... [more]
RL18_METHJ2.485e-1738.6550S ribosomal protein L18P OS=Methanospirillum hun... [more]
RL18_METS34.239e-1733.3350S ribosomal protein L18P OS=Methanobrevibacter s... [more]
RL18_METTH7.230e-1735.5450S ribosomal protein L18P OS=Methanobacterium the... [more]
RL18_METB63.038e-1535.1950S ribosomal protein L18P OS=Methanoregula boonei... [more]

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Properties
Property NameValue
Genbank descriptionC31009C12EF AbioticL1 Citrus clementina cDNA clone C31009C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869174 ID=FC869174; Name=FC869174; organism=Citrus clementina; type=EST; length=670bp
TCGAACTCTGCTTCTTCTACACTTTGAGCTTCAGCAATGGCCTTTGCCAA
AGCTCAAAAGTCAAAAGCTTACTTTAAGCGATATCAAGTTAAGTACAAGA
GAAGGCGAGAGGGAAAGACTGACTATCGGGCTAGGATTCGCCTGATCAAC
CAAGATAAAAACAAGTACAACACGCCAAAGTATCGGTTTGTTGTGCGATT
CACCAACAAAGATATCACTGCACAAATTATATCTGCCAGCATAGCCGGGG
ATATAGTCCTTGCATCTGCTTATGCCCATGAGCTTCCCCGTTATGGTCTT
GAGGTGGGCCTCACTAATTATGCAGCAGCTTATTGCACTGGACTCCTCTT
GGCCCGCCGAGTCCTGAAAATGCTTGAGATGGATGCTGAGTATGAGGGGA
ACGTTGAGGCAACAGGAGAGGACTATTCAGTTGAGCCAACTGAGAACAGG
AGGCCTTTCCGTGCCCTGCTTGATGTTGGTCTTGTGAAAACAACTACTGG
TAACCGTGTCTTTGGCGCTCTTAAGGGTGCATTGGATGGTGGACTTGATA
TCCCTCACAGTGAGAAGAGATTTGCTGGATTCAGTAAGGATAGTAAGCAA
CTTGACGCTGAAGTTCACCGTNAATACATCTATTGTGGTCATGTCGCTGC
CTACATGAGGACTTTGATGG
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