FC869174

Overview
NameFC869174
Unique NameFC869174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 52/166 (31.33%), Postives = 79/166 (47.59%), Query Frame = 1
Query:   79 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFA 576
            +++V ++RRREGKTD+R R+ L+   K        R V R +  ++ AQ+++    GD+VL SA++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH ++  A
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA 138          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_PYRAE (50S ribosomal protein L18P OS=Pyrobaculum aerophilum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 53/163 (32.52%), Postives = 71/163 (43.56%), Query Frame = 1
Query:   79 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 567
            RY+V ++RRREG T+YR R +L+   K        R VVR TNK I AQI+ A   GD+ +  A    L ++G      N AAAY  GL++  +                             RR   A+LD+GL +   G RVF            IPH E+
Sbjct:    6 RYKVPFRRRREGLTNYRKRRKLLLSKKP-------RLVVRKTNKHIIAQIVVAKPQGDVTIVGADTRILAKFGWRGDENNVAAAYLLGLVVGYK--------------------------ARARRVEEAILDIGLHRPAPGARVFAVLKGALDAGLKIPHGEE 135          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_METAC (50S ribosomal protein L18P OS=Methanosarcina acetivorans GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 56/186 (30.11%), Postives = 89/186 (47.85%), Query Frame = 1
Query:   79 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF-----------AGFSKDSKQL 603
            RY+V ++RRREG+T+Y  R++L+   ++       R VVR +++++  Q+I+ +  GDI  +SA ++EL +YG      N  AAY TGLL     LK L+    YEG +                     LD+GL  ++ G+RV+            IP S + F           AG+ ++S  L
Sbjct:    6 RYKVPFRRRREGRTNYHLRLKLLLSRQD-------RVVVRKSSRNVQIQLIAPTPDGDITYSSAVSNELAKYGYTGATGNTTAAYLTGLLFG---LKSLQKG--YEGGI---------------------LDIGLQASSAGSRVYAALKGVVDSGFEIPCSPEVFPPDERIRGEHIAGYREESSDL 158          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_THENV (50S ribosomal protein L18P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 53/163 (32.52%), Postives = 72/163 (44.17%), Query Frame = 1
Query:   79 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 567
            RY+V ++RRREG T+YR R RLI   K        R VVR TNK I AQ++ A   GD+ +       L ++G      N +AAY  GL+            A Y+  +    E              A+LD+GL +   G+RVF            IPH E+
Sbjct:    6 RYKVPFRRRREGLTNYRKRRRLILSRKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGVDTRALAKFGWRGDENNTSAAYLLGLV------------AGYKARLRGVRE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEE 135          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_SULTO (50S ribosomal protein L18P OS=Sulfolobus tokodaii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 53/143 (37.06%), Postives = 73/143 (51.05%), Query Frame = 1
Query:   67 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRAL---LDVGL 483
            A+   Y+VKY+RRREGKT+Y  R   +  +         R VVR TNK I AQI   +  GD+++ +A++ EL  ++G +  L N  AAY TG LL  R LK         G  EA  +     P +  R F A+   +D GL
Sbjct:    2 AHGPNYRVKYRRRREGKTNYYKRYTYVINNTT-------RLVVRLTNKYIIAQIAKFNPKGDVIVVAAHSMELAKKFGWKGDLNNTPAAYLTGYLLGVRALK--------AGIKEAVADIGLFVPVKGSRIFTAIKGAIDAGL 129          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_STAMF (50S ribosomal protein L18P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 46/98 (46.94%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   79 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLK 369
            RY+V  +RRREGKT+Y  R +++            RFVVR T K I  QI++A   GDI +A+A++ EL  +YG   GL N  AAY TGLL A R LK
Sbjct:    6 RYKVPKRRRREGKTNYYKRYKMVLSGHP-------RFVVRKTLKHIIVQIVTAKPEGDITIAAAHSRELYKKYGWMGGLGNTPAAYLTGLLAALRGLK 96          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_PYRAR (50S ribosomal protein L18P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 54/163 (33.13%), Postives = 73/163 (44.79%), Query Frame = 1
Query:   79 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 567
            RY+V ++RRREG T+YR R +L+   K        R VVR TNK I AQI+ A   GD  +A A    L ++G      N +AAY  GL++             Y+  +    E              A+LD+GL + T G RVF            IPH E+
Sbjct:    6 RYKVPFRRRREGLTNYRKRRKLVISKKP-------RLVVRKTNKHIIAQIVVAKPIGDETVAGADTRILTKFGWRGDENNTSAAYLLGLVVG------------YKARMRGVEE--------------AILDIGLHRPTPGARVFAVLKGALDAGLKIPHGEE 135          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_METJA (50S ribosomal protein L18P OS=Methanocaldococcus jannaschii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 52/162 (32.10%), Postives = 73/162 (45.06%), Query Frame = 1
Query:   82 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 567
            Y+VK++RRRE KTDYR R++L+   K        R V R T     AQI+     GD  + SA++ EL + G +    N  +AY TG LL ++ L         +G  E                  A+LD+GL + T GN +F            IPH E+
Sbjct:    7 YRVKFRRRREAKTDYRKRLKLLLSRKP-------RLVARRTLNHCIAQIVLYDEKGDKTVVSAHSRELIKLGYKGHTGNLPSAYLTGYLLGKKALA--------KGYTE------------------AVLDIGLHRATKGNAIFAILKGALDAGMEIPHGEE 135          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_HALLT (50S ribosomal protein L18P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 56/196 (28.57%), Postives = 81/196 (41.33%), Query Frame = 1
Query:   79 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRXYIYCGHVAAYMRTL 666
            RY+V  +RRRE +TDY  R+RL+   K        R V R +N  + AQ+++    GD   A+A + EL  YG +    N  +AY TG L   R      +DA  +                      A+LD+GL   T GN+ F            IPH++   A +S+   +             H+AAY   L
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNAHVRAQLVTPGSDGDETHAAASSEELGEYGWDAPTGNLPSAYLTGYLAGARA-----VDAGLD---------------------EAVLDIGLNTATPGNKTFAVQEGAIDAGLEIPHNDDVLADWSRTRGE-------------HIAAYAEQL 155          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_UNCMA (50S ribosomal protein L18P OS=Uncultured methanogenic archaeon RC-I GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 56/166 (33.73%), Postives = 79/166 (47.59%), Query Frame = 1
Query:   79 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF 573
            RY+V ++RRREGKTDY  R++LI        + K R VVR T+  + AQI+     GD VLA+A + EL + +G +    N +AAY TGLL+  +           E  VE                  A+LD+GL +   G+RV+            +P SE  F
Sbjct:    6 RYKVAFRRRREGKTDYHQRLKLI-------VSRKPRLVVRRTSSQVIAQILVTRPEGDKVLAAATSAELAKTFGYKGSGKNTSAAYLTGLLIGYKA---------QEAGVE-----------------EAILDMGLRENRAGSRVYAALKGAVDSGLEVPCSEDVF 138          
The following BLAST results are available for this feature:
BLAST of FC869174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
RL18_METM61.080e-1231.3350S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_PYRAE1.411e-1232.5250S ribosomal protein L18P OS=Pyrobaculum aerophil... [more]
RL18_METAC1.411e-1230.1150S ribosomal protein L18P OS=Methanosarcina aceti... [more]
RL18_THENV1.843e-1232.5250S ribosomal protein L18P OS=Thermoproteus neutro... [more]
RL18_SULTO2.407e-1237.0650S ribosomal protein L18P OS=Sulfolobus tokodaii ... [more]
RL18_STAMF2.407e-1246.9450S ribosomal protein L18P OS=Staphylothermus mari... [more]
RL18_PYRAR3.143e-1233.1350S ribosomal protein L18P OS=Pyrobaculum arsenati... [more]
RL18_METJA4.105e-1232.1050S ribosomal protein L18P OS=Methanocaldococcus j... [more]
RL18_HALLT4.105e-1228.5750S ribosomal protein L18P OS=Halorubrum lacusprof... [more]
RL18_UNCMA5.362e-1233.7350S ribosomal protein L18P OS=Uncultured methanoge... [more]

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Properties
Property NameValue
Genbank descriptionC31009C12EF AbioticL1 Citrus clementina cDNA clone C31009C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869174 ID=FC869174; Name=FC869174; organism=Citrus clementina; type=EST; length=670bp
TCGAACTCTGCTTCTTCTACACTTTGAGCTTCAGCAATGGCCTTTGCCAA
AGCTCAAAAGTCAAAAGCTTACTTTAAGCGATATCAAGTTAAGTACAAGA
GAAGGCGAGAGGGAAAGACTGACTATCGGGCTAGGATTCGCCTGATCAAC
CAAGATAAAAACAAGTACAACACGCCAAAGTATCGGTTTGTTGTGCGATT
CACCAACAAAGATATCACTGCACAAATTATATCTGCCAGCATAGCCGGGG
ATATAGTCCTTGCATCTGCTTATGCCCATGAGCTTCCCCGTTATGGTCTT
GAGGTGGGCCTCACTAATTATGCAGCAGCTTATTGCACTGGACTCCTCTT
GGCCCGCCGAGTCCTGAAAATGCTTGAGATGGATGCTGAGTATGAGGGGA
ACGTTGAGGCAACAGGAGAGGACTATTCAGTTGAGCCAACTGAGAACAGG
AGGCCTTTCCGTGCCCTGCTTGATGTTGGTCTTGTGAAAACAACTACTGG
TAACCGTGTCTTTGGCGCTCTTAAGGGTGCATTGGATGGTGGACTTGATA
TCCCTCACAGTGAGAAGAGATTTGCTGGATTCAGTAAGGATAGTAAGCAA
CTTGACGCTGAAGTTCACCGTNAATACATCTATTGTGGTCATGTCGCTGC
CTACATGAGGACTTTGATGG
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