FC869174

Overview
NameFC869174
Unique NameFC869174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14135 contig Ccv1_Contig14135:57..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_PYRIL (50S ribosomal protein L18P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 50/163 (30.67%), Postives = 72/163 (44.17%), Query Frame = 1
Query:   79 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 567
            RY+V ++RRREG T+YR R +L+   K        R VVR TNK I AQ++ A   GD+ +       L ++G +    N  AAY  GL++             Y+  +    E              A+LD+GL +   G+RVF            IPH E+
Sbjct:    6 RYKVPFRRRREGLTNYRKRRKLLLSKKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGIDTRALAKFGWKGDENNTPAAYLLGLIVG------------YKARIRGVKE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEE 135          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_METBF (50S ribosomal protein L18P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 50/165 (30.30%), Postives = 79/165 (47.88%), Query Frame = 1
Query:   79 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF 573
            RY+V ++RRREG+T+Y  R++L+   ++       R VVR + +++  Q+I+ +  GDI  +SA + EL +YG      N  AAY TGLL   + LK       YEG +                     LD+GL  ++ G+RV+            +P S + F
Sbjct:    6 RYKVPFRRRREGRTNYHLRLKLLISKQD-------RVVVRKSARNVQIQLIAPTPEGDITYSSAVSSELAKYGYTGVTGNTTAAYLTGLLFGLKSLK-----KGYEGGI---------------------LDIGLQASSAGSRVYAALKGIVDSGFEVPCSPEVF 137          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_DESK1 (50S ribosomal protein L18P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 49/138 (35.51%), Postives = 71/138 (51.45%), Query Frame = 1
Query:   79 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVK 489
            RY+V  +RRREGKT+Y  R R+I            RF+VR T   I  Q+ +A   GD+++A+A+++EL  R+G + G  N +AAY TGLL A R L+               G +Y+V      RP +  L    +K
Sbjct:    6 RYKVPRRRRREGKTNYYKRYRMIVSGHP-------RFIVRKTLNYIWVQVATARPEGDVIIAAAHSNELRKRFGWKAGTCNTSAAYLTGLLAALRALE--------------KGVEYAVPDIGLHRPVKGALVFAAIK 122          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_THEPD (50S ribosomal protein L18P OS=Thermofilum pendens (strain Hrk 5) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 52/138 (37.68%), Postives = 71/138 (51.45%), Query Frame = 1
Query:   79 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRAL---LDVGL 483
            RY+V  KRRREGKT+Y  R +LI   K        R VVR  ++    QI  A+  GD+V+ASA+++EL +YG +    N  A Y  G L A++ LK        +G  EA  +     P +  R F A+   LD GL
Sbjct:    6 RYRVPLKRRREGKTNYYKRRKLIISGKP-------RLVVRVLSRTAIVQIAKATPKGDVVIASAHSNELKKYGWKGYRRNTPALYLLGFLAAKKALK--------QGVTEAIVDIGLHRPVKASRVFAAVKGALDAGL 128          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_NANEQ (50S ribosomal protein L18P OS=Nanoarchaeum equitans GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 51/166 (30.72%), Postives = 75/166 (45.18%), Query Frame = 1
Query:   67 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSE 564
            A+  RY+V ++RRREGKT YR R++L+   K        R VVR  N +I AQ++     GD V+ + +++ L +YG +    N  +AY  GL+     LK                          R    A+LD+G  K+T GN ++            IPHSE
Sbjct:    2 AHGPRYRVPFRRRREGKTVYRKRLKLLLSGKP-------RLVVRRFNSNILAQLVEYDPKGDRVIFTIHSNVLKKYGWKGHRGNLPSAYLVGLIAGYEALK--------------------------RGYKEAVLDIGRYKSTKGNALYAVLKGALDAGLNIPHSE 134          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_METMA (50S ribosomal protein L18P OS=Methanosarcina mazei GN=rpl18p PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 51/165 (30.91%), Postives = 79/165 (47.88%), Query Frame = 1
Query:   79 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF 573
            RY+V ++RRREG+T+Y  R++L+   ++       R VVR + +++  Q+++ +  GDI  +SA + EL +YG      N  AAY TGLL     LK L+    YEG +                     LD+GL  ++ G+RV+            IP S   F
Sbjct:    6 RYKVPFRRRREGRTNYHLRLKLLLSGQD-------RVVVRKSARNVQIQLLAPTPEGDITYSSAVSSELAKYGYTGATGNTTAAYLTGLLFG---LKSLQKG--YEGGI---------------------LDIGLQASSAGSRVYAALKGIVDSGFEIPCSSDVF 137          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_METVS (50S ribosomal protein L18P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 53/166 (31.93%), Postives = 78/166 (46.99%), Query Frame = 1
Query:   79 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFA 576
            +++V ++RRREGKTD+R R+ L+   K        R V R +  +I AQ+++    GDIVL SA++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F            IP  E+  A
Sbjct:    6 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPCGEEIIA 138          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_METVA (50S ribosomal protein L18P OS=Methanococcus vannielii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 53/166 (31.93%), Postives = 78/166 (46.99%), Query Frame = 1
Query:   79 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFA 576
            +++V ++RRREGKTD+R R+ L+   K        R V R +  +I AQ+++    GDIVL SA++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F            IP  E+  A
Sbjct:    8 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPCGEEIIA 140          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_METST (50S ribosomal protein L18P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 44/134 (32.84%), Postives = 66/134 (49.25%), Query Frame = 1
Query:   82 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGL 483
            Y+V++KRRREGKT+Y  R +L++ DK        R VVR T+     Q++     GD  L SA +  L  +G      N +AAY TG L  ++ L     +  Y+  +   G   S++ T+     +  LD GL
Sbjct:    7 YKVQFKRRREGKTNYNKRYKLVDLDKT-------RMVVRITSNHTITQLVKIGENGDETLVSATSKNLKEFGWLGNGKNTSAAYLTGYLFGKKAL-----NEGYDETILDIGVQPSIKGTKIYAVLKGALDAGL 128          
BLAST of FC869174 vs. ExPASy Swiss-Prot
Match: RL18_METKA (50S ribosomal protein L18P OS=Methanopyrus kandleri GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 55/164 (33.54%), Postives = 74/164 (45.12%), Query Frame = 1
Query:   79 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 567
            RY+V ++RRREGKT+Y  R  LI  D         R V R T     AQI+  +  GD+ LASA++ EL  ++G +    N  AAY TG L   R L         E  +E                 RA++D+GL +   G+RVF            IPH E+
Sbjct:    9 RYRVPFRRRREGKTNYYKRRELIKADAP-------RLVARKTLNHNIAQIVDFAPHGDVTLASAHSIELRNKFGWKGHCGNTPAAYLTGYLCGLRAL---------ERGIE-----------------RAVIDIGLHRPVRGSRVFAMLKGALDAGMDIPHGEE 139          
The following BLAST results are available for this feature:
BLAST of FC869174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
RL18_PYRIL5.362e-1230.6750S ribosomal protein L18P OS=Pyrobaculum islandic... [more]
RL18_METBF5.362e-1230.3050S ribosomal protein L18P OS=Methanosarcina barke... [more]
RL18_DESK15.362e-1235.5150S ribosomal protein L18P OS=Desulfurococcus kamc... [more]
RL18_THEPD7.003e-1237.6850S ribosomal protein L18P OS=Thermofilum pendens ... [more]
RL18_NANEQ7.003e-1230.7250S ribosomal protein L18P OS=Nanoarchaeum equitan... [more]
RL18_METMA9.146e-1230.9150S ribosomal protein L18P OS=Methanosarcina mazei... [more]
RL18_METVS2.661e-1131.9350S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_METVA2.661e-1131.9350S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_METST4.539e-1132.8450S ribosomal protein L18P OS=Methanosphaera stadt... [more]
RL18_METKA4.539e-1133.5450S ribosomal protein L18P OS=Methanopyrus kandler... [more]

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Properties
Property NameValue
Genbank descriptionC31009C12EF AbioticL1 Citrus clementina cDNA clone C31009C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869174 ID=FC869174; Name=FC869174; organism=Citrus clementina; type=EST; length=670bp
TCGAACTCTGCTTCTTCTACACTTTGAGCTTCAGCAATGGCCTTTGCCAA
AGCTCAAAAGTCAAAAGCTTACTTTAAGCGATATCAAGTTAAGTACAAGA
GAAGGCGAGAGGGAAAGACTGACTATCGGGCTAGGATTCGCCTGATCAAC
CAAGATAAAAACAAGTACAACACGCCAAAGTATCGGTTTGTTGTGCGATT
CACCAACAAAGATATCACTGCACAAATTATATCTGCCAGCATAGCCGGGG
ATATAGTCCTTGCATCTGCTTATGCCCATGAGCTTCCCCGTTATGGTCTT
GAGGTGGGCCTCACTAATTATGCAGCAGCTTATTGCACTGGACTCCTCTT
GGCCCGCCGAGTCCTGAAAATGCTTGAGATGGATGCTGAGTATGAGGGGA
ACGTTGAGGCAACAGGAGAGGACTATTCAGTTGAGCCAACTGAGAACAGG
AGGCCTTTCCGTGCCCTGCTTGATGTTGGTCTTGTGAAAACAACTACTGG
TAACCGTGTCTTTGGCGCTCTTAAGGGTGCATTGGATGGTGGACTTGATA
TCCCTCACAGTGAGAAGAGATTTGCTGGATTCAGTAAGGATAGTAAGCAA
CTTGACGCTGAAGTTCACCGTNAATACATCTATTGTGGTCATGTCGCTGC
CTACATGAGGACTTTGATGG
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