FC869177

Overview
NameFC869177
Unique NameFC869177
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig652 contig Ccv1_Contig652:60..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869177 vs. ExPASy Swiss-Prot
Match: CATB_CHICK (Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.275e-17
Identity = 53/147 (36.05%), Postives = 68/147 (46.26%), Query Frame = 2
Query:  197 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHD----KSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYF 619
            L   ++  +N+    G +A  N  F N  +   K L G         LG P         + + LP +FD R  WP C TIS I DQG CGSCWAFGAVEA+SDR C+H    +S+ V+                   YP  AWRY+
Sbjct:   26 LSSDLVNHINKLNTTG-RAGHN--FHNTDMSYVKKLCGT-------FLGGPKAPERVDFAEDMDLPDTFDTRKQWPNCPTISEIRDQGSCGSCWAFGAVEAISDRICVHTNAKVSVEVSAEDLLSCCGFECGMGCNGGYPSGAWRYW 162          
BLAST of FC869177 vs. ExPASy Swiss-Prot
Match: CATB_PIG (Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.844e-16
Identity = 53/147 (36.05%), Postives = 66/147 (44.90%), Query Frame = 2
Query:  197 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLK----LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYF 619
            L D ++  +N+     W A  N  F N  +   K L G         LG P      +      LPKSFDAR  WP C TI  I DQG CGSCWAFGAVEA+SDR CI     +N+ +S                   +P  AW ++
Sbjct:   26 LSDELVNFINKQ-NTTWTAGHN--FYNVDLSYVKKLCGT-------FLGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTCCGDECGDGCNGGFPSGAWNFW 162          
BLAST of FC869177 vs. ExPASy Swiss-Prot
Match: CPR4_CAEEL (Cathepsin B-like cysteine proteinase 4 OS=Caenorhabditis elegans GN=cpr-4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13
Identity = 42/96 (43.75%), Postives = 51/96 (53.12%), Query Frame = 2
Query:  344 VPVKTHD-KSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFV 622
            V V  HD     +P +FDAR+ WP C +I+ I DQ  CGSCWAF A EA SDRFCI  +  +N  LS                   YPI+AW+Y V
Sbjct:   69 VEVVKHDINEDTIPATFDARTQWPNCMSINNIRDQSDCGSCWAFAAAEAASDRFCIASNGAVNTLLSAE-DVLSCCSNCGYGCEGGYPINAWKYLV 163          
BLAST of FC869177 vs. ExPASy Swiss-Prot
Match: CPR5_CAEEL (Cathepsin B-like cysteine proteinase 5 OS=Caenorhabditis elegans GN=cpr-5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 36/86 (41.86%), Postives = 45/86 (52.33%), Query Frame = 2
Query:  377 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFV 622
            +P  FDAR  WP C +I+ I DQ  CGSCWAF A EA+SDR CI  +  +N  LS                     YPI AW+++V
Sbjct:   82 IPDHFDARDQWPNCMSINNIRDQSDCGSCWAFAAAEAISDRTCIASNGAVNTLLSSEDLLSCCTGMFSCGNGCEGGYPIQAWKWWV 167          
BLAST of FC869177 vs. ExPASy Swiss-Prot
Match: CPR3_CAEEL (Cathepsin B-like cysteine proteinase 3 OS=Caenorhabditis elegans GN=cpr-3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = 2
Query:  377 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI 508
            LP +FDAR  WP C+TI  I +Q  CGSCWAFGA E +SDR CI
Sbjct:   92 LPDTFDAREKWPDCNTIKLIRNQATCGSCWAFGAAEVISDRVCI 135          
The following BLAST results are available for this feature:
BLAST of FC869177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CATB_CHICK8.275e-1736.05Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1[more]
CATB_PIG1.844e-1636.05Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1[more]
CPR4_CAEEL1.461e-1343.75Cathepsin B-like cysteine proteinase 4 OS=Caenorha... [more]
CPR5_CAEEL1.786e-1141.86Cathepsin B-like cysteine proteinase 5 OS=Caenorha... [more]
CPR3_CAEEL3.978e-1163.64Cathepsin B-like cysteine proteinase 3 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionC31009D03EF AbioticL1 Citrus clementina cDNA clone C31009D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869177 ID=FC869177; Name=FC869177; organism=Citrus clementina; type=EST; length=626bp
AGGGGCCCGGGGCTCTTGGCTCACAACACAAGAAAAGTGCTCTCTCCCAT
TTCTCCTCACTTCGTCCTTCCCGAGCCAGTCATCCATGGCTCCATCTCAC
CTCTTTCTTACTACATGTTTGTTAATTCTTGGCGTTATCTCCTCCCAGAC
TTTTGCAGAGGGAGTGGTTTCCAAGCTCAAGCTTGATTCTCATATTCTCC
AGGATTCAATCATCAAAGAAGTGAATGAGAACCCTAAGGCTGGATGGAAA
GCTGCCAGAAATCCTCAATTTTCCAATTACACTGTTGGGCAATTTAAGCA
CCTTCTTGGAGTCAAGCCAACACCTAAAGGGCTGCTCTTGGGTGTCCCTG
TTAAAACTCATGACAAATCCTTGAAGTTGCCTAAAAGCTTTGATGCAAGG
TCCGCTTGGCCACAATGCAGCACCATTAGTAGGATCCTAGATCAGGGCCA
TTGTGGTTCTTGTTGGGCTTTTGGTGCTGTTGAAGCGCTATCTGATCGTT
TCTGCATCCATTTTGGCATGAACCTATCTCTATCAGTTAATGATCTTTTA
GCCTGCTGTGGCTTTTTGTGTGGAGATGGTTGTGACGGGGGTTATCCAAT
TTCTGCATGGCGATACTTTGTCCACC
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