FC869182

Overview
NameFC869182
Unique NameFC869182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869182_ssr27 microsatellite FC869182_ssr27:27..48. BLAST: Citrus ESTs to Prunus persica proteins V1
FC869182_ssr18 microsatellite FC869182_ssr18:18..29. BLAST: Citrus ESTs to Prunus persica proteins V1
FC869182_ssr30 microsatellite FC869182_ssr30:30..45. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12399 contig Ccv1_Contig12399:103..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869182 vs. ExPASy Swiss-Prot
Match: 14331_ORYSJ (14-3-3-like protein GF14-A OS=Oryza sativa subsp. japonica GN=GF14A PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 7.125e-64
Identity = 123/179 (68.72%), Postives = 148/179 (82.68%), Query Frame = 1
Query:  103 TREQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAA--ELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAAEDTMQSYKAAQDIAGADLAPTHPIRLGLALN 633
            TRE+ VY+AKLAEQAERYEEMVEFM+K+V  +      ELTVEERNLLSVAYKNVIG+ RA+WRIVSSIEQKEEGR    H +  + YR++VE ELS++CA ILRLL+  L+P+A A ++KVFYLKMKGDYHRY+AEFK G ERK AA+ T+ +Y+AAQDIA  +L+PTHPIRLGLALN
Sbjct:    9 TREEMVYMAKLAEQAERYEEMVEFMEKVVTAAAAGGGGELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEEGRGAAGHAAAARSYRARVEAELSNICAGILRLLDERLVPAAAAVDAKVFYLKMKGDYHRYLAEFKTGAERKDAADATLAAYQAAQDIAMKELSPTHPIRLGLALN 187          
BLAST of FC869182 vs. ExPASy Swiss-Prot
Match: 1433_CHLRE (14-3-3-like protein OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 3.536e-63
Identity = 124/176 (70.45%), Postives = 148/176 (84.09%), Query Frame = 1
Query:  106 REQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAAEDTMQSYKAAQDIAGADLAPTHPIRLGLALN 633
            RE+ VY+AKLAEQAERY+EMVE M+K V       EL+VEERNLLSVAYKNVIG+ RA+WRI+SSIEQKEE + NEEHV  +++YR+ VE+ELS +CASIL+LL+ +LIP+A+  ESKVFYLKMKGDYHRY+AEFK G +RK AAE T+ +YKAAQDIA  DL PTHPIRLGLALN
Sbjct:    5 REECVYMAKLAEQAERYDEMVEEMKK-VAKLVHDQELSVEERNLLSVAYKNVIGARRASWRIISSIEQKEEAKGNEEHVQRIRKYRTVVEEELSKICASILQLLDDHLIPTASTGESKVFYLKMKGDYHRYLAEFKTGADRKEAAEHTLLAYKAAQDIALVDLPPTHPIRLGLALN 179          
BLAST of FC869182 vs. ExPASy Swiss-Prot
Match: 14332_SOLTU (14-3-3-like protein RA215 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 6.031e-63
Identity = 119/176 (67.61%), Postives = 147/176 (83.52%), Query Frame = 1
Query:  106 REQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAAEDTMQSYKAAQDIAGADLAPTHPIRLGLALN 633
            RE+ VY+A +A +AERYEEMVEFM+K+V       ELTVEERNLLSVAYKNVIG+ RA+WRI+SSIEQKEE R NE+HV+ +K+YRS++E EL+ +C  IL+LL++ LI SA   +SKVFYLKMKGDY+RY+AEFK G ERK AAE+T+ +YK+AQDIA  +LAPTHPIRLGLALN
Sbjct:    5 REENVYMANVAARAERYEEMVEFMEKVVAALD--TELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVASIKKYRSQIENELTSICNGILKLLDSKLIGSAATGDSKVFYLKMKGDYYRYLAEFKTGTERKEAAENTLSAYKSAQDIANGELAPTHPIRLGLALN 178          
BLAST of FC869182 vs. ExPASy Swiss-Prot
Match: 1433_DICDI (14-3-3-like protein OS=Dictyostelium discoideum GN=fttB PE=1 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 2.802e-60
Identity = 118/178 (66.29%), Postives = 144/178 (80.90%), Query Frame = 1
Query:  100 LTREQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAAEDTMQSYKAAQDIAGADLAPTHPIRLGLALN 633
            +TRE+ VY+AKLAEQAERYEEMVE M+K+   +    ELTVEERNLLSVAYKNVIG+ RA+WRI+SSIEQKEE + NE HV  +KEY+ KVEKEL+D+C  IL +LE++LI S+ + ESKVFY KMKGDY RY+AEF  G+ RK +AE ++ +YKAA DIA  +L PTHPIRLGLALN
Sbjct:    1 MTREENVYMAKLAEQAERYEEMVEAMKKV---AELDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNENHVKKIKEYKCKVEKELTDICNDILEVLESHLIVSSASGESKVFYYKMKGDYFRYLAEFATGNPRKTSAESSLIAYKAASDIAVTELPPTHPIRLGLALN 175          
BLAST of FC869182 vs. ExPASy Swiss-Prot
Match: 1433E_DROME (14-3-3 protein epsilon OS=Drosophila melanogaster GN=14-3-3epsilon PE=1 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 1.816e-59
Identity = 117/176 (66.48%), Postives = 142/176 (80.68%), Query Frame = 1
Query:  106 REQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAAEDTMQSYKAAQDIAGADLAPTHPIRLGLALN 633
            RE  VY AKLAEQAERY+EMVE M+K+   ++   ELTVEERNLLSVAYKNVIG+ RA+WRI++SIEQKEE +  EE + ++K YR +VEKEL D+C+ IL +LE +LIP AT+ ESKVFY KMKGDYHRY+AEF  G +RK AAE+++ +YKAA DIA  DL PTHPIRLGLALN
Sbjct:    4 RENNVYKAKLAEQAERYDEMVEAMKKV---ASMDVELTVEERNLLSVAYKNVIGARRASWRIITSIEQKEENKGAEEKLEMIKTYRGQVEKELRDICSDILNVLEKHLIPCATSGESKVFYYKMKGDYHRYLAEFATGSDRKDAAENSLIAYKAASDIAMNDLPPTHPIRLGLALN 176          
BLAST of FC869182 vs. ExPASy Swiss-Prot
Match: RAD24_SCHPO (DNA damage checkpoint protein rad24 OS=Schizosaccharomyces pombe GN=rad24 PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 9.013e-59
Identity = 117/177 (66.10%), Postives = 144/177 (81.36%), Query Frame = 1
Query:  103 TREQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAAEDTMQSYKAAQDIAGADLAPTHPIRLGLALN 633
            +RE  VYLAKLAEQAERYE MVE M+   V ST   ELTVEERNLLSVAYKNVIG+ RA+WRIVSSIEQKEE + N   V L+KEYR K+E+EL  +C  IL +LE +LIP+A ++ESKVFY KMKGDY+RY+AEF +G++R+ +A+ +++ YKAA +IA A+LAPTHPIRLGLALN
Sbjct:    5 SREDAVYLAKLAEQAERYEGMVENMKS--VASTDQ-ELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALN 178          
BLAST of FC869182 vs. ExPASy Swiss-Prot
Match: RAD25_SCHPO (DNA damage checkpoint protein rad25 OS=Schizosaccharomyces pombe GN=rad25 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.008e-58
Identity = 113/177 (63.84%), Postives = 142/177 (80.23%), Query Frame = 1
Query:  103 TREQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAAEDTMQSYKAAQDIAGADLAPTHPIRLGLALN 633
            +RE  VYLAKLAEQAERYEEMVE M+K+   +    +L+VEERNLLSVAYKN+IG+ RA+WRI+SSIEQKEE R N    +L+KEYR K+E ELSD+C  +L +LE +LIP+AT  ESKVFY KMKGDY+RY+AEF +G+  K AA+ ++++YKAA DIA A+L PT P+RLGLALN
Sbjct:    4 SRENSVYLAKLAEQAERYEEMVENMKKVACSND---KLSVEERNLLSVAYKNIIGARRASWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALN 177          
BLAST of FC869182 vs. ExPASy Swiss-Prot
Match: 1433_CANAL (14-3-3 protein homolog OS=Candida albicans GN=BMH1 PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 5.842e-58
Identity = 114/177 (64.41%), Postives = 142/177 (80.23%), Query Frame = 1
Query:  103 TREQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAAEDTMQSYKAAQDIAGADLAPTHPIRLGLALN 633
            +RE  VYLAKLAEQAERYEEMVE M+ +   ++   EL+VEERNLLSVAYKNVIG+ RA+WRIVSSIEQKEE + NE  V+L+++YR+K+E ELS +C  IL +L  +LI SA   ESKVFY KMKGDYHRY+AEF I ++RK AA+ ++++YKAA D+A  +L PTHPIRLGLALN
Sbjct:    4 SREDSVYLAKLAEQAERYEEMVENMKAV---ASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEEAKGNESQVALIRDYRAKIEAELSKICEDILSVLSDHLITSAQTGESKVFYYKMKGDYHRYLAEFAIAEKRKEAADLSLEAYKAASDVAVTELPPTHPIRLGLALN 177          
BLAST of FC869182 vs. ExPASy Swiss-Prot
Match: 1433_TRIHA (14-3-3 protein homolog OS=Trichoderma harzianum PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 9.965e-58
Identity = 112/175 (64.00%), Postives = 141/175 (80.57%), Query Frame = 1
Query:  109 EQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAAEDTMQSYKAAQDIAGADLAPTHPIRLGLALN 633
            E  VYLAKLAEQAERYEEMVE M+   + ++   +LTVEERNLLSVAYKNVIG+ RA+WRIV+SIEQKEE + N   V+L+KEYR K+E EL+ +C  IL +L+ +LIPSA + ESKVFY K+KGDYHRY+AEF IGD RK +A+ ++++YKAA ++A  +L PTHPIRLGLALN
Sbjct:    4 EDAVYLAKLAEQAERYEEMVENMK---IVASEDRDLTVEERNLLSVAYKNVIGARRASWRIVTSIEQKEESKGNSSQVTLIKEYRQKIENELAKICDDILEVLDQHLIPSAKSGESKVFYHKIKGDYHRYLAEFAIGDRRKDSADKSLEAYKAATEVAQTELPPTHPIRLGLALN 175          
BLAST of FC869182 vs. ExPASy Swiss-Prot
Match: 1433D_SOYBN (14-3-3-like protein D OS=Glycine max GN=GF14D PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.899e-57
Identity = 112/176 (63.64%), Postives = 141/176 (80.11%), Query Frame = 1
Query:  106 REQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAAEDTMQSYKAAQDIAGADLAPTHPIRLGLALN 633
            RE +VY+AKLAEQAERYEEMVE M+ +   +    ELTVEERNLLSV YKNVIG+ RA+WRI+SSIEQKEE + NE +   +KEYR KVE ELS++C  ++R+++ +LIPSA A ES VFY KMKGDY+RY+AEFK G+E+K AA+ +M++Y++A   A ADL PTHPIRLGLALN
Sbjct:    7 RENFVYIAKLAEQAERYEEMVESMKNV---ANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEETKGNELNAKRIKEYRQKVELELSNICNDVMRVIDEHLIPSAAAGESTVFYYKMKGDYYRYLAEFKSGNEKKEAADQSMKAYESATAAAEADLPPTHPIRLGLALN 179          
The following BLAST results are available for this feature:
BLAST of FC869182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
14331_ORYSJ7.125e-6468.7214-3-3-like protein GF14-A OS=Oryza sativa subsp. ... [more]
1433_CHLRE3.536e-6370.4514-3-3-like protein OS=Chlamydomonas reinhardtii P... [more]
14332_SOLTU6.031e-6367.6114-3-3-like protein RA215 OS=Solanum tuberosum PE=... [more]
1433_DICDI2.802e-6066.2914-3-3-like protein OS=Dictyostelium discoideum GN... [more]
1433E_DROME1.816e-5966.4814-3-3 protein epsilon OS=Drosophila melanogaster ... [more]
RAD24_SCHPO9.013e-5966.10DNA damage checkpoint protein rad24 OS=Schizosacch... [more]
RAD25_SCHPO2.008e-5863.84DNA damage checkpoint protein rad25 OS=Schizosacch... [more]
1433_CANAL5.842e-5864.4114-3-3 protein homolog OS=Candida albicans GN=BMH1... [more]
1433_TRIHA9.965e-5864.0014-3-3 protein homolog OS=Trichoderma harzianum PE... [more]
1433D_SOYBN2.899e-5763.6414-3-3-like protein D OS=Glycine max GN=GF14D PE=2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31009D08EF AbioticL1 Citrus clementina cDNA clone C31009D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869182 ID=FC869182; Name=FC869182; organism=Citrus clementina; type=EST; length=633bp
CGCAACGCAAGCCGTCCGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCAT
CACACTTTCAGAGCCTGTGAAAAAGATGGCGACAACAGTTCCGGACAACC
TGACGAGAGAGCAGTACGTGTACTTAGCCAAGCTAGCCGAGCAAGCCGAG
CGTTACGAAGAGATGGTGGAGTTCATGCAGAAGCTGGTTGTCGGCTCGAC
TCCAGCCGCCGAGCTGACGGTCGAGGAGCGAAACCTCCTCTCAGTGGCCT
ACAAGAACGTAATCGGCTCACTCCGCGCCGCGTGGCGCATCGTGTCGTCG
ATCGAGCAGAAGGAGGAGGGGAGGAAGAACGAGGAACACGTGTCGCTCGT
GAAAGAGTACAGATCGAAGGTGGAGAAGGAGCTTTCGGATGTGTGCGCGA
GTATTTTGAGGTTGTTGGAAGCGAATTTGATTCCGTCGGCTACGGCGAGT
GAGTCCAAAGTGTTTTATTTGAAAATGAAGGGAGATTATCATCGTTACAT
GGCCGAGTTTAAGATTGGCGATGAGCGGAAAGCCGCCGCTGAAGACACTA
TGCAATCTTACAAAGCTGCTCAGGATATTGCTGGGGCTGATCTCGCGCCG
ACGCATCCGATAAGGCTGGGATTGGCTCTCAAT
back to top