FC869193

Overview
NameFC869193
Unique NameFC869193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 3
Query:  492 SLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            SL+HAQSILAI ACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPE      V+  +  RLAM
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAM 223          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 3
Query:  492 SLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            SL+HAQSILAI ACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPE      V+  +  RLAM
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAM 223          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 3
Query:  492 SLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            SL+HAQSILAI ACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPE      V+  +  RLAM
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAM 72          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 3
Query:  492 SLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            SL+HAQSILAI ACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPE      V+  +  RLAM
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAM 221          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 3
Query:  492 SLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            SL+HAQSILAI ACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPE      V+  +  RLAM
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAM 221          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 55/80 (68.75%), Postives = 60/80 (75.00%), Query Frame = 3
Query:  471 LDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            LDYLGNPSL+HAQSILAI A QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPE      V+  +  RLAM
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAM 80          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.093e-17
Identity = 72/212 (33.96%), Postives = 97/212 (45.75%), Query Frame = 3
Query:   84 VGKAVNLAPSGNELGNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDP---ELLLSSSVRNQEWRLAM 704
            VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + DP   E L    ++N   RLAM
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKN--GRLAM 199          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.089e-17
Identity = 61/163 (37.42%), Postives = 83/163 (50.92%), Query Frame = 3
Query:  198 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAG--GPLGEVTDPL------------YPGGS-FDPLG 638
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q       +Y  + + +           ++VL+G  EG R A    P    TDP+            YPGG  FDPLG
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTTTLF--------IVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 206          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 63/175 (36.00%), Postives = 85/175 (48.57%), Query Frame = 3
Query:  162 SKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAG--GPLGEVTDPL------------YPGGS-FDPLG 638
            S+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q       +Y  + + +           ++VL+G  EG R A    P    TDP+            YPGG  FDPLG
Sbjct:   51 SRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTTTLF--------VIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 206          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 55/143 (38.46%), Postives = 72/143 (50.35%), Query Frame = 3
Query:  231 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDP 653
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDPLG + DP
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDP 182          
The following BLAST results are available for this feature:
BLAST of FC869193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB2F_SOLLC1.496e-2377.78Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.496e-2377.78Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC1.496e-2377.78Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.496e-2377.78Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.496e-2377.78Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA2.389e-2168.75Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB121_HORVU2.093e-1733.96Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB12_SOLLC6.089e-1737.42Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY5.155e-1636.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB11_SOLLC1.148e-1538.46Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31009E07EF AbioticL1 Citrus clementina cDNA clone C31009E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869193 ID=FC869193; Name=FC869193; organism=Citrus clementina; type=EST; length=704bp
CAGCTGCTCTTGTCTGCACAACTTCGGCTTCTGAATTAAATTCCGCAATG
GCCACCTCAACAATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAA
CCTTGCCCCTTCAGGCAATGAGCTGGGCAATGGTGGCCGCATCTCCATGC
GTAAAACCGCGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCG
GACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCCAAGCTACTT
GACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAGCCGGGCTTTCAG
CTGACCCAGAAACCTTTGCCAAGAACCGCGAACTCGAAGTCATCCACTGC
AGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGC
CCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCAGGAGCTC
AGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAACCCAAGCTTGATC
CACGCCCAGAGCATCTTGGCCATCTGAGCTTGCCAGGTGGTATTGATGGG
AGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTG
ACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGAC
CCGGAGCTTTTGCTGAGCTCAAGTGTAAGGAATCAAGAATGGAGGTTGGC
TATG
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