FC869201

Overview
NameFC869201
Unique NameFC869201
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9477 contig Ccv1_Contig9477:1..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869201 vs. ExPASy Swiss-Prot
Match: BARS_ARATH (Alpha-barbatene synthase OS=Arabidopsis thaliana GN=BS PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.272e-22
Identity = 58/170 (34.12%), Postives = 100/170 (58.82%), Query Frame = 2
Query:  119 SIWGDHFINVSSNEKYTNTEVEKRFETLKAEI-EKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSL 625
            S WGD F+  S  +   +  +E+  E LK ++ E + VS++T    +++ +  ++ L  LG++YHFE EI+E+L+  ++   +   D      N L+ ++  FR+ R +GY +S+D+FK F+ + G+FK  L  D KG+L  YEA +     ++IL+EA  F+  HL+SL
Sbjct:   21 SQWGDQFLKFSIADSDFDV-LEREIEVLKPKVRENIFVSSSTDKDAMKKTILSIHFLDSLGLSYHFEKEIEESLKHAFEKIEDLIAD-----ENKLHTISTIFRVFRTYGYYMSSDVFKIFKGDDGKFKESLIEDVKGMLSFYEAVHFGTTTDHILDEALSFTLNHLESL 184          
BLAST of FC869201 vs. ExPASy Swiss-Prot
Match: SCS_SALOF (1,8-cineole synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.610e-22
Identity = 66/186 (35.48%), Postives = 103/186 (55.38%), Query Frame = 2
Query:   62 SSRESTKADVNRRSSDYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKG-EFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHL 616
            S +   +    RR+  Y P++W    I +  +E Y   +   R   + A++  LL     + + LE    +++ L+RLG++ HF+ EI E L + Y  + N   D      +DLY  ALRF+LLRQ+ + VS ++F  F+++KG +FK  L +D +GLL LYEAS+L  QGE  L  A +F+ K L
Sbjct:   46 SLQMGNEIQTGRRTGGYQPTLWDFSTIQLFDSE-YKEEKHLMRAAGMIAQVNMLLQEEVDSIQRLE----LIDDLRRLGISCHFDREIVEILNSKY--YTNNEID-----ESDLYSTALRFKLLRQYDFSVSQEVFDCFKNDKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLHLARDFATKFL 219          
BLAST of FC869201 vs. ExPASy Swiss-Prot
Match: TPSDA_ABIGR (Limonene synthase, chloroplastic OS=Abies grandis GN=ag10 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21
Identity = 67/193 (34.72%), Postives = 109/193 (56.48%), Query Frame = 2
Query:   89 VNRRSSDYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS---NNTAWKTLEEIVA---IVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNN---DLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEF--KAMLTND--AKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLL 628
            + RR +D+HP++W D FI  S +  Y  +   +R ET+  E++++  S   N   + +  +++    +V+ ++RLG+  HF+NEI+ AL  +Y S+      +    ++   DL   AL  R LR HGY VS+D+ + F+DEKG F   A+LT     + +L LY AS +   GE ++EEA  FS  +LK +L
Sbjct:   68 LQRRIADHHPNLWEDDFIQ-SLSSPYGGSSYSERAETVVEEVKEMFNSIPNNRELFGSQNDLLTRLWMVDSIERLGIDRHFQNEIRVALDYVY-SYWKEKEGIGCGRDSTFPDLNSTALALRTLRLHGYNVSSDVLEYFKDEKGHFACPAILTEGQITRSVLNLYRASLVAFPGEKVMEEAEIFSASYLKKVL 258          
BLAST of FC869201 vs. ExPASy Swiss-Prot
Match: MYRS2_ARATH (Myrcene/ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.308e-21
Identity = 64/173 (36.99%), Postives = 92/173 (53.18%), Query Frame = 2
Query:   71 ESTKADVNRRSSDYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEE 589
            ++   D+ RRS +Y PS W DH   +S   KY N +       LK +++K+L    T  K+  E + +++ LQ+LGV+YHFE EI   L   +    NG      D   DL+  AL FRLLRQHG+ VS DIF    D K E     +++   ++ LYEASYL  + +  L +
Sbjct:   39 DANPLDLRRRSGNYQPSSW-DHSYLLSIENKYVNEKEVITRHVLKKKVKKMLEEVET--KSRLEKLELIDDLQKLGVSYHFEQEINNILTNFHLE--NGKNIWKCDKEEDLHATALEFRLLRQHGFGVSEDIFDVIID-KIESNTFKSDNITSIITLYEASYLSTKSDTKLHK 205          
BLAST of FC869201 vs. ExPASy Swiss-Prot
Match: MYRS1_ARATH (Myrcene/ocimene synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.628e-20
Identity = 61/166 (36.75%), Postives = 90/166 (54.22%), Query Frame = 2
Query:   89 VNRRSSDYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILE 586
            V RRS++Y PS W  H + +S   K+   +  +  + LK ++ K+L   N   KT  + +  ++ LQ+LGV+YHFE EI   L + Y        D      +DL+  AL FRL RQHG+ VS D+F  F +  G+F     +D  GL+ LYEASYL  + +  L+
Sbjct:   44 VQRRSANYQPSRWDHHHL-LSVENKFAKDKRVRERDLLKEKVRKML---NDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKK------DRTNIQESDLHATALEFRLFRQHGFNVSEDVFDVFMENCGKFD---RDDIYGLISLYEASYLSTKLDKNLQ 196          
BLAST of FC869201 vs. ExPASy Swiss-Prot
Match: TPSDB_ABIGR (Limonene/alpha-pinene synthase, chloroplastic OS=Abies grandis GN=ag11 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.777e-20
Identity = 65/193 (33.68%), Postives = 108/193 (55.96%), Query Frame = 2
Query:   89 VNRRSSDYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS---NNTAWKTLEEIVA---IVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNN---DLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEF--KAMLTND--AKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLL 628
            + RR +D+HP++W D FI  S +  Y  +   +R  T+  E++++  S   N   + +  +++    +V+ ++RLG+  HF+NEI+ AL  +Y S+      +    ++   DL   AL  R LR HGY VS+D+ + F+D+KG F   A+LT     + +L LY AS +   GE ++EEA  FS  +LK +L
Sbjct:   68 LQRRIADHHPNLWEDDFIQ-SLSSPYGGSSYSERAVTVVEEVKEMFNSIPNNRELFGSQNDLLTRLWMVDSIERLGIDRHFQNEIRVALDYVY-SYWKEKEGIGCGRDSTFPDLNSTALALRTLRLHGYNVSSDVLEYFKDQKGHFACPAILTEGQITRSVLNLYRASLVAFPGEKVMEEAEIFSASYLKEVL 258          
BLAST of FC869201 vs. ExPASy Swiss-Prot
Match: CINS_ARATH (1,8-cineole synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.777e-20
Identity = 61/173 (35.26%), Postives = 98/173 (56.65%), Query Frame = 2
Query:   71 ESTKADVNRRSSDYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEE 589
            ++T  +++RRS +Y PS W   ++    N+  + TEV  R + LK +++ +L       K+  E + +++ LQ+LGV+YHFE EI + L  ++   +  NC    D   DL+  +L FRLLRQHG+ VS +IF    D+  E     TN+  G++ LYEASYL  + +  L +
Sbjct:   39 DTTLVELSRRSGNYQPSPWNHCYLLSIENKYASETEVITR-DVLKKKVKSMLDDEK---KSRLEQLELIDDLQKLGVSYHFEIEINDTLTDLH-LKMGRNC-WKCDKEEDLHATSLEFRLLRQHGFDVSENIFDVIIDQI-ESNTFKTNNINGIISLYEASYLSTKSDTKLHK 204          
BLAST of FC869201 vs. ExPASy Swiss-Prot
Match: TPSD3_ABIGR (Pinene synthase, chloroplastic OS=Abies grandis GN=ag3 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 65/203 (32.02%), Postives = 98/203 (48.28%), Query Frame = 2
Query:   53 SVLSSRESTKADVNRRSSDYHPSIWGDHFIN---VSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVA---IVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHN-NDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKA----MLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLL 628
            S+ S+   T   V RR  D+H ++W D  I     +  EK      EK    +K     + + +      L +++    IV+ L+RLG+  HF++EIK AL  +Y            +    DL   AL  R LR HGY VS+D+FK F+ + G+F          + +G+L L+ AS +   GE I++EA  FS K+LK  L
Sbjct:   50 SMSSTTVVTDDGVRRRMGDFHSNLWDDDVIQSLPTAYEEKSYLERAEKLIGEVKNMFNSMSLEDGELMSPLNDLIQRLWIVDSLERLGIHRHFKDEIKSALDYVYSYWGENGIGCGRESVVTDLNSTALGLRTLRLHGYPVSSDVFKAFKGQNGQFSCSENIQTDEEIRGVLNLFRASLIAFPGEKIMDEAEIFSTKYLKEAL 252          
BLAST of FC869201 vs. ExPASy Swiss-Prot
Match: TPSD9_ABIGR (Terpinolene synthase, chloroplastic OS=Abies grandis GN=ag9 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 70/211 (33.18%), Postives = 109/211 (51.66%), Query Frame = 2
Query:   35 VMRDVKSVLSSRESTKADVNRRSSDYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNN-------TAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHN-NDLYIVALRFRLLRQHGYKVSADIFKKFRD--EKGEF--KAMLT-NDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLL 628
            V   ++  LS+  S    V RR  ++H ++W D FI  S +  Y      +R + L  E++ +  S +       T    L + + +V+ ++RLG+  HF+NEIK AL  +Y            D    DL   AL FR+LR HGY VS+D+ + F++  EKG+F   A+ T  + K +L L+ AS +   GE ++EEA  FS+ +LK  L
Sbjct:   45 VTHSLRMSLSTAVSDDHGVQRRIVEFHSNLWDDDFIQ-SLSTPYGAPSYRERADRLIVEVKGIFTSISAEDGELITPLNDLIQRLLMVDNVERLGIDRHFKNEIKAALDYVYSYWNEKGIGSGSDSGVADLNSTALGFRILRLHGYSVSSDVLEHFKEEKEKGQFVCSAIQTEEEIKSVLNLFRASLIAFPGEKVMEEAEIFSKIYLKEAL 254          
BLAST of FC869201 vs. ExPASy Swiss-Prot
Match: TPSD6_ABIGR (Camphene synthase, chloroplastic OS=Abies grandis GN=ag6 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.378e-19
Identity = 69/225 (30.67%), Postives = 116/225 (51.56%), Query Frame = 2
Query:   14 KELGVVGVMRDVKSV-------LSSRESTKADVNRRSSDYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEE-------IVAIVNQLQRLGVAYHFENEIKEALQTI--YDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKA----MLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLL 628
            + +  +G+ R  KSV       L+S  ST + V RR  +YH ++W D FI    +  Y   +  +R + L  E++ ++ +    +K+LE+        + +V+ ++RLG+  HF+ EIK AL  +  Y +     C        DL   AL  R LR HGY VS+D+   F+D+ G+F +     +  + +G+L L+ AS +   GE +++EA  FS K+L+  L
Sbjct:   26 RTIPTLGICRPGKSVAHSINMCLTSVASTDS-VQRRVGNYHSNLWDDDFIQSLISTPYGAPDYRERADRLIGEVKDIMFN----FKSLEDGGNDLLQRLLLVDDVERLGIDRHFKKEIKTALDYVNSYWNEKGIGCG-RESVVTDLNSTALGLRTLRLHGYTVSSDVLNVFKDKNGQFSSTANIQIEGEIRGVLNLFRASLVAFPGEKVMDEAETFSTKYLREAL 244          
The following BLAST results are available for this feature:
BLAST of FC869201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
BARS_ARATH2.272e-2234.12Alpha-barbatene synthase OS=Arabidopsis thaliana G... [more]
SCS_SALOF6.610e-2235.481,8-cineole synthase, chloroplastic OS=Salvia offi... [more]
TPSDA_ABIGR1.923e-2134.72Limonene synthase, chloroplastic OS=Abies grandis ... [more]
MYRS2_ARATH7.308e-2136.99Myrcene/ocimene synthase 2, chloroplastic OS=Arabi... [more]
MYRS1_ARATH1.628e-2036.75Myrcene/ocimene synthase 1, chloroplastic OS=Arabi... [more]
TPSDB_ABIGR2.777e-2033.68Limonene/alpha-pinene synthase, chloroplastic OS=A... [more]
CINS_ARATH2.777e-2035.261,8-cineole synthase, chloroplastic OS=Arabidopsis... [more]
TPSD3_ABIGR6.187e-2032.02Pinene synthase, chloroplastic OS=Abies grandis GN... [more]
TPSD9_ABIGR1.055e-1933.18Terpinolene synthase, chloroplastic OS=Abies grand... [more]
TPSD6_ABIGR1.378e-1930.67Camphene synthase, chloroplastic OS=Abies grandis ... [more]

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Properties
Property NameValue
Genbank descriptionC31009F03EF AbioticL1 Citrus clementina cDNA clone C31009F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869201 ID=FC869201; Name=FC869201; organism=Citrus clementina; type=EST; length=630bp
TTGAGAGAACTTGAAAGAATTAGGGGTTGTTGGGGTTATGAGGGATGTTA
AGAGTGTTCTTTCTTCAAGAGAAAGCACGAAGGCCGATGTGAACCGTCGA
TCCTCGGATTATCATCCTAGCATTTGGGGTGATCATTTCATTAATGTGTC
ATCAAATGAAAAGTACACCAATACGGAAGTCGAAAAGCGGTTTGAAACAT
TAAAAGCAGAAATTGAAAAGTTGCTGGTGAGCAATAATACAGCATGGAAA
ACACTTGAAGAAATTGTGGCTATTGTTAATCAACTTCAACGCCTTGGTGT
GGCCTATCATTTTGAAAATGAGATCAAAGAGGCCTTACAAACAATCTATG
ATAGCCATGTTAACGGCAATTGTGATGTTAATTACGATCATAATAACGAT
CTCTACATAGTTGCTCTTCGATTTCGGCTTCTAAGGCAGCATGGTTACAA
GGTGTCAGCAGATATATTTAAAAAATTCAGAGATGAAAAAGGTGAATTCA
AGGCCATGTTAACAAATGACGCGAAAGGCTTGCTATGTTTGTATGAGGCG
TCATATCTGAGAGTACAAGGGGAGAATATATTGGAAGAAGCATGTGAATT
TTCTAGGAAGCACTTAAAATCTTTATTGTC
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