FC869201

Overview
NameFC869201
Unique NameFC869201
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9477 contig Ccv1_Contig9477:1..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869201 vs. ExPASy Swiss-Prot
Match: TPSD2_PICAB (Isopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-ISO PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13
Identity = 45/124 (36.29%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  275 VNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNN---DLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKG---LLCLYEASYLRVQGENILEEACEFSRKHLKSLL 628
            V+ ++RLG+ +HF+ EIK+AL  +Y SH +    + +   N   D+   A+  R+LR HGY VS+D+ K FRDE GEF   L    +G   +L +   S++   GE I++EA   + ++L++ L
Sbjct:  358 VDTVERLGIDHHFKEEIKDALDYVY-SHWDER-GIGWARENPIPDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVAFPGETIMQEAKLCTERYLRNAL 479          
BLAST of FC869201 vs. ExPASy Swiss-Prot
Match: TPSD1_GINBI (Levopimaradiene synthase, chloroplastic OS=Ginkgo biloba GN=LPS PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.609e-13
Identity = 46/124 (37.10%), Postives = 70/124 (56.45%), Query Frame = 2
Query:  275 VNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNN---DLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGL---LCLYEASYLRVQGENILEEACEFSRKHLKSLL 628
            V+ ++RLG+  +F+ EIKE+L  +Y  + +    V +   N   D+   A+  R+LR HGY VS+D+ + FRDEKG+F         G+   L LY  S +   GE I+EEA  F+  HL++ L
Sbjct:  362 VDTVERLGIDRYFKKEIKESLDYVY-RYWDAERGVGWARCNPIPDVDDTAMGLRILRLHGYNVSSDVLENFRDEKGDFFCFAGQTQIGVTDNLNLYRCSQVCFPGEKIMEEAKTFTTNHLQNAL 484          
BLAST of FC869201 vs. ExPASy Swiss-Prot
Match: KSA_PEA (Ent-copalyl diphosphate synthase, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.784e-12
Identity = 49/128 (38.28%), Postives = 70/128 (54.69%), Query Frame = 2
Query:  254 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHV---NGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGE---FKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLK 619
            L E + +V++L+RLG++  F +EIK+ +   Y S +    G C     +  D+   A+ FRLLR HG++VSA +FK F +  GE   F    T    G+  L+ AS +   GE ILE A  FS K LK
Sbjct:  324 LFEHIWVVDRLERLGISRFFRHEIKDCMN--YVSKIWSEKGICWARNSNVQDIDDTAMAFRLLRLHGHQVSAHVFKHF-ERNGEFFCFAGQCTQAVTGMYNLFRASQVLFPGEKILEHAKHFSAKVLK 448          
The following BLAST results are available for this feature:
BLAST of FC869201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
TPSD2_PICAB2.518e-1336.29Isopimaradiene synthase, chloroplastic OS=Picea ab... [more]
TPSD1_GINBI5.609e-1337.10Levopimaradiene synthase, chloroplastic OS=Ginkgo ... [more]
KSA_PEA2.784e-1238.28Ent-copalyl diphosphate synthase, chloroplastic OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31009F03EF AbioticL1 Citrus clementina cDNA clone C31009F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869201 ID=FC869201; Name=FC869201; organism=Citrus clementina; type=EST; length=630bp
TTGAGAGAACTTGAAAGAATTAGGGGTTGTTGGGGTTATGAGGGATGTTA
AGAGTGTTCTTTCTTCAAGAGAAAGCACGAAGGCCGATGTGAACCGTCGA
TCCTCGGATTATCATCCTAGCATTTGGGGTGATCATTTCATTAATGTGTC
ATCAAATGAAAAGTACACCAATACGGAAGTCGAAAAGCGGTTTGAAACAT
TAAAAGCAGAAATTGAAAAGTTGCTGGTGAGCAATAATACAGCATGGAAA
ACACTTGAAGAAATTGTGGCTATTGTTAATCAACTTCAACGCCTTGGTGT
GGCCTATCATTTTGAAAATGAGATCAAAGAGGCCTTACAAACAATCTATG
ATAGCCATGTTAACGGCAATTGTGATGTTAATTACGATCATAATAACGAT
CTCTACATAGTTGCTCTTCGATTTCGGCTTCTAAGGCAGCATGGTTACAA
GGTGTCAGCAGATATATTTAAAAAATTCAGAGATGAAAAAGGTGAATTCA
AGGCCATGTTAACAAATGACGCGAAAGGCTTGCTATGTTTGTATGAGGCG
TCATATCTGAGAGTACAAGGGGAGAATATATTGGAAGAAGCATGTGAATT
TTCTAGGAAGCACTTAAAATCTTTATTGTC
back to top