FC869203

Overview
NameFC869203
Unique NameFC869203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10228 contig Ccv1_Contig10228:118..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869203 vs. ExPASy Swiss-Prot
Match: PSBO_CHLRE (Oxygen-evolving enhancer protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.055e-36
Identity = 76/146 (52.05%), Postives = 95/146 (65.07%), Query Frame = 3
Query:  210 ATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFA-FKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTINNW 644
            A +A  ++ A   G    LT+DEIQ  TY++VKG+G AN CP ++ G  +    K G Y+ + FC+EPTSFTVK E   K    +F  TKLMTRLTYTLD + G F+V  DG+ +  E DGIDYAA TVQL GGERV FLFTI  +
Sbjct:   34 AAAAAALATAMVAGSANALTFDEIQGLTYLQVKGSGIANTCPVLESGTTNLKELKAGSYKLENFCIEPTSFTVKEESQFKGGETEFVKTKLMTRLTYTLDAMSGSFKVGSDGSAELKEDDGIDYAATTVQLPGGERVAFLFTIKQF 179          
BLAST of FC869203 vs. ExPASy Swiss-Prot
Match: PSBO_EUGGR (Oxygen-evolving enhancer protein 1, chloroplastic OS=Euglena gracilis GN=PSBO PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.589e-35
Identity = 79/152 (51.97%), Postives = 95/152 (62.50%), Query Frame = 3
Query:  192 IAGFALATSALVVSGASAEGV-PKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDS-FAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTINN 641
            +AG   A  A ++  A A       LTYDE+QS +Y+EVK +G A  CP +  GV S  + K GKY+   +CLEP+SF VK     K    +F+ TKLMTRLTYTLD I     V  DG+    EKDG+DYAA TVQLAGGERVPFLFTI N
Sbjct:   71 LAGAGRAMGAALIGAAVAGSANAASLTYDELQSLSYLEVKSSGIAGTCPVLADGVSSKLSLKAGKYEINNWCLEPSSFQVKLPPTEKQQVTEFERTKLMTRLTYTLDAISADLNVGGDGSWTIQEKDGLDYAATTVQLAGGERVPFLFTIKN 222          
BLAST of FC869203 vs. ExPASy Swiss-Prot
Match: PSBO_THEEB (Photosystem II manganese-stabilizing polypeptide OS=Thermosynechococcus elongatus (strain BP-1) GN=psbO PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.631e-26
Identity = 58/122 (47.54%), Postives = 84/122 (68.85%), Query Frame = 3
Query:  282 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTINN 641
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+AGGER+P LFT+ N
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKN 150          
BLAST of FC869203 vs. ExPASy Swiss-Prot
Match: PSBO_SYNEN (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus naegeli GN=psbO PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.631e-26
Identity = 58/122 (47.54%), Postives = 84/122 (68.85%), Query Frame = 3
Query:  282 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTINN 641
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+AGGER+P LFT+ N
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKN 150          
BLAST of FC869203 vs. ExPASy Swiss-Prot
Match: PSBO_ANASP (Photosystem II manganese-stabilizing polypeptide OS=Anabaena sp. (strain PCC 7120) GN=psbO PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.380e-25
Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = 3
Query:  291 TYMEVKGTGTANQCP----TIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTINN 641
            TY +++GTG AN+CP    T  G +   + K   Y  K+ CLEPT+F VK E  NK    +F   KL+TR T T+D++ G  + + D ++ FVEKDG+D+ A+TVQL GGERVPFLFTI N
Sbjct:   34 TYEQIRGTGLANKCPQLTETSRGSIPLDSSK--SYVLKELCLEPTNFFVKEEPANKRQTAEFVAGKLLTRYTSTIDQVSGDLKFNDDSSLTFVEKDGLDFQAITVQLPGGERVPFLFTIKN 152          
BLAST of FC869203 vs. ExPASy Swiss-Prot
Match: PSBO_CYAA5 (Photosystem II manganese-stabilizing polypeptide OS=Cyanothece sp. (strain ATCC 51142) GN=psbO PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.209e-21
Identity = 56/122 (45.90%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  282 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTINN 641
            Q  TY E+  TG AN+CP I      S   +PG+ Y     CLEP  + VK E VNK    ++   KL+TR T +L++I G   V  DG + F E+ GID+  VTVQL GGE+VPF FTI N
Sbjct:   32 QDLTYDEILNTGLANKCPQISEFTRGSIPIEPGQTYFVDDLCLEPQEYFVKEEPVNKRQEAEYVPGKLLTRYTTSLEQISGKITVDEDGVVTFYEEGGIDFQPVTVQLPGGEQVPFFFTIKN 153          
BLAST of FC869203 vs. ExPASy Swiss-Prot
Match: PSBO_SYNY3 (Photosystem II manganese-stabilizing polypeptide OS=Synechocystis sp. (strain PCC 6803) GN=psbO PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.594e-21
Identity = 52/120 (43.33%), Postives = 70/120 (58.33%), Query Frame = 3
Query:  291 TYMEVKGTGTANQCPTIDGGV-DSFAFKPG-KYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTINNW 644
            TY ++  TG AN CP I      +   +P  KY    FC+EP  + VK E VNK    ++   K++TR T +L++I G   V  DGT+ F EKDGID+  +TV L GGE VPF FT+ N+
Sbjct:   35 TYDDIVNTGLANVCPEISSFTRGTIEVEPNTKYFVSDFCMEPQEYFVKEEPVNKRQKAEYVKGKVLTRQTTSLEQIRGSIAVGADGTLTFKEKDGIDFQPITVLLPGGEEVPFFFTVKNF 154          
BLAST of FC869203 vs. ExPASy Swiss-Prot
Match: PSBO_SYNE7 (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus (strain PCC 7942) GN=psbO PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.977e-20
Identity = 52/125 (41.60%), Postives = 74/125 (59.20%), Query Frame = 3
Query:  267 TYDEIQSKTYMEVKGTGTANQCPTI-DGGVDSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTI 635
            T  ++ + TY ++K TG AN+C ++ +    +   + GK Y     CLEP  F VK E  NK    +F   K++TR T +LD++ G   +  DGT+ F EK GID+ A+TV L GGE VPFLFT+
Sbjct:   26 TAADLGTLTYDQIKDTGLANKCLSLKESARGTIPLEAGKKYALTDLCLEPQEFFVKEEPGNKRQKAEFVPGKVLTRYTSSLDQVYGDLALKADGTVSFTEKGGIDFQAITVLLPGGEEVPFLFTV 150          
BLAST of FC869203 vs. ExPASy Swiss-Prot
Match: PSBO_POPEU (Oxygen-evolving enhancer protein 1, chloroplastic (Fragments) OS=Populus euphratica GN=PSBO PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.013e-13
Identity = 41/70 (58.57%), Postives = 43/70 (61.43%), Query Frame = 3
Query:  426 KAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTI 635
            KAEG+NKN+PPDFQ TKLMTR                         DGIDYAAVTVQL GGERVPFLFTI
Sbjct:   10 KAEGINKNSPPDFQKTKLMTR-------------------------DGIDYAAVTVQLPGGERVPFLFTI 54          
BLAST of FC869203 vs. ExPASy Swiss-Prot
Match: PSBO_BRARA (Oxygen-evolving enhancer protein 1, chloroplastic (Fragment) OS=Brassica rapa GN=PSBO PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.601e-11
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 3
Query:  246 EGVPKRLTYDEIQSKTYMEVKGTGTANQCPT 338
            EG PKRLTYDEIQSKTYMEVKGTGTANQCPT
Sbjct:    1 EGAPKRLTYDEIQSKTYMEVKGTGTANQCPT 31          
The following BLAST results are available for this feature:
BLAST of FC869203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PSBO_CHLRE5.055e-3652.05Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_EUGGR5.589e-3551.97Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_THEEB3.631e-2647.54Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNEN3.631e-2647.54Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_ANASP1.380e-2548.76Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_CYAA51.209e-2145.90Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNY34.594e-2143.33Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNE72.977e-2041.60Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_POPEU6.013e-1358.57Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_BRARA9.601e-1196.77Oxygen-evolving enhancer protein 1, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31009F05EF AbioticL1 Citrus clementina cDNA clone C31009F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869203 ID=FC869203; Name=FC869203; organism=Citrus clementina; type=EST; length=652bp
TACAAGCCGCAGCTACACTGATGCAACCCACCAAGGTGGGTGTGGTACCC
GCTCGCACCAGCAGCCTGCAGCTGAGGTCTTCACAGAGCGTTTCGAAGGC
TTTTGGTGTCGACTCAGCTGGTGCTAGGATCTCTTGCTCTTTGAATAATG
ACTTGAAGGATTTGGCTCAGAAATGTGTTGATGCTACCAAGATCGCTGGC
TTTGCCCTCGCCACTTCTGCTCTCGTCGTTTCGGGAGCAAGTGCTGAAGG
TGTTCCAAAGAGGCTAACCTATGATGAAATCCAGAGCAAGACATACATGG
AAGTGAAGGGAACCGGAACTGCTAACCAGTGCCCAACCATTGATGGCGGA
GTTGACTCTTTTGCCTTCAAACCTGGCAAATACCAGGCTAAGAAGTTCTG
CCTAGAACCAACTTCCTTCACTGTCAAGGCTGAGGGTGTCAACAAGAATG
CCCCACCAGATTTCCAGAACACCAAGCTCATGACCCGCCTTACCTACACC
CTTGACGAGATTGAGGGACCTTTTGAAGTGTCCCCCGATGGCACCATTAA
GTTTGTGGAGAAGGATGGAATTGACTATGCTGCTGTGACAGTTCAGCTGG
CTGGAGGCGAGCGTGTGCCCTTCCTTTTCACCATCAACAATTGGTAGCAT
CA
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