FC869206

Overview
NameFC869206
Unique NameFC869206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:34..476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 1.611e-49
Identity = 92/99 (92.93%), Postives = 96/99 (96.97%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            TDKIIAEYIWIG SGMD+RSKARTL GPVSDPS+LPKWNYDGSSTGQAPGEDSEVI+YPQAIFKDPFRRGN+ILVMCDAYTPAGEPIPTNKR AAAKIF
Sbjct:   16 TDKIIAEYIWIGGSGMDLRSKARTLSGPVSDPSELPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNHILVMCDAYTPAGEPIPTNKRAAAAKIF 114          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.748e-49
Identity = 91/99 (91.92%), Postives = 95/99 (95.96%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            T+KIIAEYIWIG SGMD+RSKARTL GPV+DPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKR+ AAKIF
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYNAAKIF 114          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLN13_ARATH (Glutamine synthetase cytosolic isozyme 1-3 OS=Arabidopsis thaliana GN=GLN1-3 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.748e-49
Identity = 91/99 (91.92%), Postives = 95/99 (95.96%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            T KIIAEYIWIG SGMD+RSKARTLPGPV+DPSKLPKWNYDGSSTGQA GEDSEVILYPQAIFKDPFR+GNNILVMCDAYTPAG+PIPTNKRH AAKIF
Sbjct:   16 TGKIIAEYIWIGGSGMDIRSKARTLPGPVTDPSKLPKWNYDGSSTGQAAGEDSEVILYPQAIFKDPFRKGNNILVMCDAYTPAGDPIPTNKRHNAAKIF 114          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.589e-49
Identity = 90/99 (90.91%), Postives = 95/99 (95.96%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            TDK+IAEYIW+G SGMDMRSKARTL GPV DPSKLPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRRG+NILVMCDAYTPAGEPIPTNKR+ AAKIF
Sbjct:   16 TDKVIAEYIWVGGSGMDMRSKARTLSGPVKDPSKLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGSNILVMCDAYTPAGEPIPTNKRNNAAKIF 114          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA1_PEA (Glutamine synthetase nodule isozyme OS=Pisum sativum GN=GS1 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 3.589e-49
Identity = 88/99 (88.89%), Postives = 97/99 (97.98%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            T+KIIAEYIWIG SG+D+R KARTLPGPV+DPS+LPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRRGN+ILVMCDAY+PAGEPIPTNKRHAAAK+F
Sbjct:   15 TEKIIAEYIWIGGSGLDLRCKARTLPGPVTDPSELPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGNHILVMCDAYSPAGEPIPTNKRHAAAKVF 113          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA_LUPLU (Glutamine synthetase nodule isozyme OS=Lupinus luteus PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.688e-49
Identity = 89/99 (89.90%), Postives = 96/99 (96.97%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            T+KIIAEYIW+G SG+D+RSKARTL GPV+DPSKLPKWNYDGSSTGQAPG+DSEVIL+PQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKRHAAAKIF
Sbjct:   16 TEKIIAEYIWVGGSGVDLRSKARTLSGPVNDPSKLPKWNYDGSSTGQAPGKDSEVILWPQAIFKDPFRRGNNILVMCDTYTPAGEPIPTNKRHAAAKIF 114          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA3_PHAVU (Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 6.122e-49
Identity = 88/99 (88.89%), Postives = 94/99 (94.95%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            T+++IAEYIW+G SGMDMRSKARTL GPV DPSKLPKWNYDGSSTGQAPG+DSEVILYPQ IF+DPFRRGNNILVMCDAYTPAGEPIPTNKRH AAKIF
Sbjct:   16 TERVIAEYIWVGGSGMDMRSKARTLSGPVKDPSKLPKWNYDGSSTGQAPGQDSEVILYPQTIFRDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIF 114          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA1_PHAVU (Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.044e-48
Identity = 87/99 (87.88%), Postives = 96/99 (96.97%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            T+K+IAEYIWIG SG+D+RSKARTLPGPV +PS+LPKWNYDGSSTGQAPG+DSEVI+YPQAIFKDPFRRGNNILV+CDAYTPAGEPIPTNKRH AAKIF
Sbjct:   16 TEKVIAEYIWIGGSGLDLRSKARTLPGPVKNPSELPKWNYDGSSTGQAPGQDSEVIIYPQAIFKDPFRRGNNILVICDAYTPAGEPIPTNKRHNAAKIF 114          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.968e-48
Identity = 86/99 (86.87%), Postives = 95/99 (95.96%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            ++KIIAEYIW+G SGMD+RSKARTLPGPVSDP+KLPKWNYDGSST QAPG+DSEVILYPQAIFKDPFR+GNNILV+CD YTPAGEP+PTNKRH AAKIF
Sbjct:   16 SEKIIAEYIWVGGSGMDLRSKARTLPGPVSDPAKLPKWNYDGSSTNQAPGQDSEVILYPQAIFKDPFRQGNNILVICDVYTPAGEPLPTNKRHNAAKIF 114          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 5.183e-48
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            T+K+I EYIW+G SGMD+RSKARTL GPVSDP+KLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKR  AAKIF
Sbjct:   16 TEKVIVEYIWVGGSGMDLRSKARTLSGPVSDPAKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDTYTPAGEPIPTNKRCNAAKIF 114          
The following BLAST results are available for this feature:
BLAST of FC869206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GLNA_LACSA1.611e-4992.93Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA3_MAIZE2.748e-4991.92Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]
GLN13_ARATH2.748e-4991.92Glutamine synthetase cytosolic isozyme 1-3 OS=Arab... [more]
GLNA2_SOYBN3.589e-4990.91Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]
GLNA1_PEA3.589e-4988.89Glutamine synthetase nodule isozyme OS=Pisum sativ... [more]
GLNA_LUPLU4.688e-4989.90Glutamine synthetase nodule isozyme OS=Lupinus lut... [more]
GLNA3_PHAVU6.122e-4988.89Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=... [more]
GLNA1_PHAVU1.044e-4887.88Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE... [more]
GLNA3_MEDSA3.968e-4886.87Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLNA1_VITVI5.183e-4888.89Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]

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Properties
Property NameValue
Genbank descriptionC31009F08EF AbioticL1 Citrus clementina cDNA clone C31009F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869206 ID=FC869206; Name=FC869206; organism=Citrus clementina; type=EST; length=443bp
GGGATCACGTCTCTGTGTAGTCTCATTAACATCCCTTCAATCACAGCAAT
CTCATTACCAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAAC
ATGTCTCTGCTCTCAGATCTCCTTAACCTTAACCTCTCAGAATCCACTGA
CAAGATCATCGCTGAGTACATATGGATCGGTAGATCTGGCATGGACATGA
GGAGCAAAGCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTG
CCTAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGA
TAGTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGA
GAGGCAACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAA
CCAATTCCAACAAACAAAAGACATGCAGCTGCCAAGATTTTCA
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