FC869206

Overview
NameFC869206
Unique NameFC869206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:34..476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA3_LUPAN (Glutamine synthetase nodule isozyme (Fragment) OS=Lupinus angustifolius PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 8.841e-48
Identity = 86/99 (86.87%), Postives = 96/99 (96.97%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            T+KIIAEYIW+G SG+D+RSKARTL GPV+DPSKLPKWNYDGSSTGQAPG+DSEVIL+PQAIFKDPFRRGNNILV+CD YTP+G+PIPTNKRHAAAKIF
Sbjct:   16 TEKIIAEYIWVGGSGVDLRSKARTLSGPVNDPSKLPKWNYDGSSTGQAPGKDSEVILWPQAIFKDPFRRGNNILVICDTYTPSGKPIPTNKRHAAAKIF 114          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 8.841e-48
Identity = 86/99 (86.87%), Postives = 94/99 (94.95%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            T+KIIAEYIW+G SGMD+RSKARTLPGPV DP+KLPKWNYDGSST QAPG+DSEVILYPQAIFKDPFRRGNNILV+CD YTPAGEP+PTNKR+ AAKIF
Sbjct:   16 TEKIIAEYIWVGGSGMDLRSKARTLPGPVDDPAKLPKWNYDGSSTDQAPGDDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYDAAKIF 114          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA3_PEA (Glutamine synthetase root isozyme A OS=Pisum sativum GN=GS3A PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.155e-47
Identity = 86/99 (86.87%), Postives = 95/99 (95.96%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            T+KIIAEYIW+G SG+D+RSKARTLPGPVSDP+KLPKWNYDGSST QAPG+DSEVILYPQAIFKDPFRRGNNILV+CD YTPAGEP+PTNKR+ AAKIF
Sbjct:   16 TEKIIAEYIWVGGSGIDIRSKARTLPGPVSDPAKLPKWNYDGSSTNQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIF 114          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA4_PEA (Glutamine synthetase root isozyme B OS=Pisum sativum GN=GS3B PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.508e-47
Identity = 86/99 (86.87%), Postives = 95/99 (95.96%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            T+KIIAEYIW+G SG+D+RSKARTLPGPVSDP+KLPKWNYDGSST QAPG+DSEVILYPQAIFKDPFRRGNNILV+CD YTPAGEP+PTNKR+ AAKIF
Sbjct:   16 TEKIIAEYIWVGGSGIDIRSKARTLPGPVSDPAKLPKWNYDGSSTDQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIF 114          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLN12_ORYSJ (Glutamine synthetase cytosolic isozyme 1-2 OS=Oryza sativa subsp. japonica GN=GLN1-2 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.277e-46
Identity = 84/99 (84.85%), Postives = 94/99 (94.95%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            +DKIIAEYIW+G SG+D+RSKART+ GP++D S+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRG+NILVMCD YTP GEPIPTNKRH+AAKIF
Sbjct:   16 SDKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHSAAKIF 114          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 OS=Zea mays GN=GS1-5 PE=2 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 3.714e-46
Identity = 82/99 (82.83%), Postives = 93/99 (93.94%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            TDKIIAEYIW+G SG+D+RSKART+ GP++DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR+GNNILVMCD YTP GEPIP+NKR+ AA +F
Sbjct:   16 TDKIIAEYIWVGGSGIDLRSKARTVKGPITDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNNILVMCDCYTPQGEPIPSNKRYKAATVF 114          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA3_HORVU (Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.851e-46
Identity = 86/98 (87.76%), Postives = 90/98 (91.84%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 439
            T+KIIAEYIWIG SGMD+RSKAR LPGPV+ PSKLPKWNYDGSSTGQAPGEDSEVILYPQAI KDPFR GNNILVMCD YTP GEPIPTNKR+ AAKI
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARHLPGPVTHPSKLPKWNYDGSSTGQAPGEDSEVILYPQAILKDPFREGNNILVMCDCYTPRGEPIPTNKRYNAAKI 113          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLN15_ARATH (Glutamine synthetase cytosolic isozyme 1-5 OS=Arabidopsis thaliana GN=GLN1-5 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 6.336e-46
Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            T KIIAEYIWIG SGMD+RSKARTLPGPVS+P+KLPKWNYDGSST QA G+DSEVILYPQAIFKDPFR+GNNILVMCDAY PAG+PIPTN RH A KIF
Sbjct:   16 TKKIIAEYIWIGGSGMDIRSKARTLPGPVSNPTKLPKWNYDGSSTDQAAGDDSEVILYPQAIFKDPFRKGNNILVMCDAYRPAGDPIPTNNRHKAVKIF 114          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA1_MAIZE (Glutamine synthetase root isozyme 1 OS=Zea mays GN=GLN6 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.081e-45
Identity = 81/99 (81.82%), Postives = 94/99 (94.95%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            TD+IIAEYIWIG +G+D+RSKART+ GP++DP +LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR+GN+ILVMCD YTP GEPIPTNKR++AAK+F
Sbjct:   16 TDRIIAEYIWIGGTGIDLRSKARTVKGPITDPIQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNHILVMCDCYTPQGEPIPTNKRYSAAKVF 114          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 1.411e-45
Identity = 83/99 (83.84%), Postives = 91/99 (91.92%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            TDKIIAEYIW+G SG+D+RSK+RT+  PV DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CD YTP GEPIPTNKRH AA+IF
Sbjct:   78 TDKIIAEYIWVGGSGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPQGEPIPTNKRHMAAQIF 176          
The following BLAST results are available for this feature:
BLAST of FC869206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GLNA3_LUPAN8.841e-4886.87Glutamine synthetase nodule isozyme (Fragment) OS=... [more]
GLNA2_PHAVU8.841e-4886.87Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLNA3_PEA1.155e-4786.87Glutamine synthetase root isozyme A OS=Pisum sativ... [more]
GLNA4_PEA1.508e-4786.87Glutamine synthetase root isozyme B OS=Pisum sativ... [more]
GLN12_ORYSJ1.277e-4684.85Glutamine synthetase cytosolic isozyme 1-2 OS=Oryz... [more]
GLNA5_MAIZE3.714e-4682.83Glutamine synthetase root isozyme 5 OS=Zea mays GN... [more]
GLNA3_HORVU4.851e-4687.76Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1[more]
GLN15_ARATH6.336e-4685.86Glutamine synthetase cytosolic isozyme 1-5 OS=Arab... [more]
GLNA1_MAIZE1.081e-4581.82Glutamine synthetase root isozyme 1 OS=Zea mays GN... [more]
GLNA2_HORVU1.411e-4583.84Glutamine synthetase leaf isozyme, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC31009F08EF AbioticL1 Citrus clementina cDNA clone C31009F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869206 ID=FC869206; Name=FC869206; organism=Citrus clementina; type=EST; length=443bp
GGGATCACGTCTCTGTGTAGTCTCATTAACATCCCTTCAATCACAGCAAT
CTCATTACCAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAAC
ATGTCTCTGCTCTCAGATCTCCTTAACCTTAACCTCTCAGAATCCACTGA
CAAGATCATCGCTGAGTACATATGGATCGGTAGATCTGGCATGGACATGA
GGAGCAAAGCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTG
CCTAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGA
TAGTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGA
GAGGCAACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAA
CCAATTCCAACAAACAAAAGACATGCAGCTGCCAAGATTTTCA
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