FC869206

Overview
NameFC869206
Unique NameFC869206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:34..476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA2_ARATH (Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.253e-43
Identity = 80/99 (80.81%), Postives = 91/99 (91.92%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            +D+IIAEYIWIG SG+D+RSK+RT+  PV DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIF+DPFR GNNILV+CD +TPAGEPIPTNKR  AA+IF
Sbjct:   74 SDRIIAEYIWIGGSGIDLRSKSRTIEKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTWTPAGEPIPTNKRAKAAEIF 172          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLN13_ORYSJ (Glutamine synthetase cytosolic isozyme 1-3 OS=Oryza sativa subsp. japonica GN=GLN1-3 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 5.020e-43
Identity = 78/99 (78.79%), Postives = 89/99 (89.90%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            TDK+IAEYIW+G +GMD+RSKARTL GPV DPSKLPKWN+DGSSTGQA G+DSEVIL+PQAIF+DPFR+G NILVMCD Y P GEPIPTN R+ AA+IF
Sbjct:   18 TDKVIAEYIWVGGTGMDVRSKARTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILVMCDCYAPNGEPIPTNNRYNAARIF 116          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA1_DAUCA (Glutamine synthetase cytosolic isozyme OS=Daucus carota GN=GLN1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 5.550e-42
Identity = 81/99 (81.82%), Postives = 87/99 (87.88%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            TDK IAEYIWI   G  +RSKARTL GPV DP+KLPKWN+DGSSTGQ PG+DSEVI+YPQAIFKDPFRRGN+ILVMCD YTPAGEPIPTNKR  AAKIF
Sbjct:   16 TDKFIAEYIWIDAVG-GLRSKARTLSGPVDDPTKLPKWNFDGSSTGQGPGDDSEVIIYPQAIFKDPFRRGNHILVMCDTYTPAGEPIPTNKRCNAAKIF 113          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.367e-40
Identity = 78/99 (78.79%), Postives = 87/99 (87.88%), Query Frame = 2
Query:  146 TDKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            T+K+IAEYIWIG SGMDMRSKAR+L GPVS   +LPKWNYDGSSTGQA G DSEVILYPQAIF+DPFRRG +ILV+CDAY+P G  IP+NKR AAAKIF
Sbjct:   17 TEKVIAEYIWIGGSGMDMRSKARSLSGPVSSVKELPKWNYDGSSTGQAQGHDSEVILYPQAIFRDPFRRGKHILVICDAYSPNGTAIPSNKRAAAAKIF 115          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA1_CHLRE (Glutamine synthetase cytosolic isozyme OS=Chlamydomonas reinhardtii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 4.126e-29
Identity = 64/106 (60.38%), Postives = 74/106 (69.81%), Query Frame = 2
Query:  152 KIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTP----------AGEPIPTNKRHAAAKI 439
            KI AEY+WIG S  D+RSK+RTL    + P  LP WNYDGSSTGQAPG DSEV L P++IFKDPFR G+NILVMCD Y P          A +PIPTN R A A++
Sbjct:   37 KICAEYVWIGGSMHDVRSKSRTLSTIPTKPEDLPHWNYDGSSTGQAPGHDSEVYLIPRSIFKDPFRGGDNILVMCDCYEPPKVNPDGTLAAPKPIPTNTRFACAEV 142          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA_ASHGO (Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.816e-24
Identity = 52/96 (54.17%), Postives = 67/96 (69.79%), Query Frame = 2
Query:  155 IIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            +IAEYIW+  +G  +RSK RTL   V    +LP+WN+DGSSTGQAPG DS+V L P A + DPFRRG+NI+V+ + +   G P   N RH AAK+F
Sbjct:   23 VIAEYIWVDSAG-HLRSKGRTLQRRVESVDELPEWNFDGSSTGQAPGHDSDVYLKPVAFYPDPFRRGDNIIVLAECWNNDGTPNKYNHRHEAAKLF 117          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA2_DROME (Glutamine synthetase 2 cytoplasmic OS=Drosophila melanogaster GN=Gs2 PE=2 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 8.902e-24
Identity = 52/93 (55.91%), Postives = 61/93 (65.59%), Query Frame = 2
Query:  161 AEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 439
            A Y+WI  +G D+R K RTL      P +LP WNYDGSS  QA G +S+  LYP AI+KDPFRRGNNILVMCD Y   G P  TNKR    ++
Sbjct:   34 ATYVWIDGTGEDLRCKDRTLDFIPQSPKELPVWNYDGSSCYQAEGSNSDTYLYPVAIYKDPFRRGNNILVMCDTYKFDGTPTDTNKRKTCLEV 126          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA_KLULA (Glutamine synthetase OS=Kluyveromyces lactis GN=GLN1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.163e-23
Identity = 52/96 (54.17%), Postives = 66/96 (68.75%), Query Frame = 2
Query:  155 IIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            IIAEY+WI   G  +RSK RTL   V+    LP+WN+DGSSTGQAPG DS++ L P A + DPFRRG+NI+V+ + +   G P   N RH AAK+F
Sbjct:   26 IIAEYVWIDSEG-GLRSKGRTLNKKVTSVDSLPEWNFDGSSTGQAPGHDSDIYLKPVAFYPDPFRRGDNIVVLAECWNNDGTPNKFNHRHEAAKLF 120          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA_YEAST (Glutamine synthetase OS=Saccharomyces cerevisiae GN=GLN1 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.590e-23
Identity = 51/97 (52.58%), Postives = 68/97 (70.10%), Query Frame = 2
Query:  152 KIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            +IIAEY+WI  +G ++RSK RTL   ++   +LP+WN+DGSST QAPG DS++ L P A + DPFRRG+NI+V+   Y   G P   N RH AAK+F
Sbjct:   23 RIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVAYYPDPFRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLF 118          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA_CANGA (Glutamine synthetase OS=Candida glabrata GN=GLN1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 7.536e-23
Identity = 49/97 (50.52%), Postives = 68/97 (70.10%), Query Frame = 2
Query:  152 KIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 442
            K+IAEY+W+  +G ++RSKARTL   ++   +LP+WN+DGSST QAPG DS++ L P A + DPFRRG+NI V+ + +   G P   N RH A K+F
Sbjct:   23 KVIAEYVWVDGTG-NLRSKARTLNKVITSIEQLPEWNFDGSSTNQAPGYDSDIYLKPVAFYPDPFRRGDNITVLAECFNSDGTPNKFNHRHEANKLF 118          
The following BLAST results are available for this feature:
BLAST of FC869206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GLNA2_ARATH2.253e-4380.81Glutamine synthetase, chloroplastic/mitochondrial ... [more]
GLN13_ORYSJ5.020e-4378.79Glutamine synthetase cytosolic isozyme 1-3 OS=Oryz... [more]
GLNA1_DAUCA5.550e-4281.82Glutamine synthetase cytosolic isozyme OS=Daucus c... [more]
GLNA_PINSY1.367e-4078.79Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA1_CHLRE4.126e-2960.38Glutamine synthetase cytosolic isozyme OS=Chlamydo... [more]
GLNA_ASHGO6.816e-2454.17Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE... [more]
GLNA2_DROME8.902e-2455.91Glutamine synthetase 2 cytoplasmic OS=Drosophila m... [more]
GLNA_KLULA1.163e-2354.17Glutamine synthetase OS=Kluyveromyces lactis GN=GL... [more]
GLNA_YEAST2.590e-2352.58Glutamine synthetase OS=Saccharomyces cerevisiae G... [more]
GLNA_CANGA7.536e-2350.52Glutamine synthetase OS=Candida glabrata GN=GLN1 P... [more]

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Properties
Property NameValue
Genbank descriptionC31009F08EF AbioticL1 Citrus clementina cDNA clone C31009F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869206 ID=FC869206; Name=FC869206; organism=Citrus clementina; type=EST; length=443bp
GGGATCACGTCTCTGTGTAGTCTCATTAACATCCCTTCAATCACAGCAAT
CTCATTACCAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAAC
ATGTCTCTGCTCTCAGATCTCCTTAACCTTAACCTCTCAGAATCCACTGA
CAAGATCATCGCTGAGTACATATGGATCGGTAGATCTGGCATGGACATGA
GGAGCAAAGCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTG
CCTAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGA
TAGTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGA
GAGGCAACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAA
CCAATTCCAACAAACAAAAGACATGCAGCTGCCAAGATTTTCA
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