FC869206

Overview
NameFC869206
Unique NameFC869206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:34..476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA_HUMAN (Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 SV=4)

HSP 1 Score: 89.3521 bits (220), Expect = 7.299e-18
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 2
Query:  149 DKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 439
            +K+ A YIWI  +G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV+C+ +     P  TN RH   +I
Sbjct:   24 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI 120          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA_PIG (Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 9.533e-18
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 2
Query:  149 DKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 439
            +K+ A YIWI  +G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH   +I
Sbjct:   24 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRI 120          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA_MOUSE (Glutamine synthetase OS=Mus musculus GN=Glul PE=1 SV=6)

HSP 1 Score: 88.9669 bits (219), Expect = 9.533e-18
Identity = 41/97 (42.27%), Postives = 62/97 (63.92%), Query Frame = 2
Query:  149 DKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 439
            +K+ A YIW+  +G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L+P A+F+DPFR+  N LV+C+ +    +P  TN RH   +I
Sbjct:   24 EKVQAMYIWVDGTGEGLRCKTRTLDCEPKCVEELPEWNFDGSSTFQSEGSNSDMYLHPVAMFRDPFRKDPNKLVLCEVFKYNRKPAETNLRHICKRI 120          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA_RAT (Glutamine synthetase OS=Rattus norvegicus GN=Glul PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.245e-17
Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  149 DKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 439
            +KI   YIW+  +G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L+P A+F+DPFRR  N LV C+ +    +P  TN RH+  +I
Sbjct:   24 EKIQLMYIWVDGTGEGLRCKTRTLDCDPKCVEELPEWNFDGSSTFQSEGSNSDMYLHPVAMFRDPFRRDPNKLVFCEVFKYNRKPAETNLRHSCKRI 120          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA_CAEEL (Probable glutamine synthetase OS=Caenorhabditis elegans GN=gln-2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.626e-17
Identity = 49/99 (49.49%), Postives = 59/99 (59.60%), Query Frame = 2
Query:  152 KIIAEYIWIGRSGMDMRSKART---LPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 439
            KI A Y+WI  +G ++RSK RT   LP  + D    P WNYDGSSTGQA G DS+  L P A + DPF  G N LVMCD      +P  T+ R A A+I
Sbjct:   29 KIQATYVWIDGTGENLRSKTRTFDKLPKRIED---YPIWNYDGSSTGQAKGRDSDRYLRPVAAYPDPFLGGGNKLVMCDTLDHQMQPTATSHRQACAEI 124          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA_MACFA (Glutamine synthetase OS=Macaca fascicularis GN=GLUL PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.774e-17
Identity = 43/98 (43.88%), Postives = 62/98 (63.27%), Query Frame = 2
Query:  149 DKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGE-PIPTNKRHAAAKI 439
            +K+ A YIWI  +G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV+C+++    E P  TN RH   +I
Sbjct:   24 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCESFQVQFEGPAETNLRHTCKRI 121          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA_CHICK (Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.774e-17
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  149 DKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 439
            +K+ A YIWI  +G  +R K RTL         LP+WN+DGSST QA G +S++ L P A+F+DPFR+  N LV+C+ +    +   TN RH   +I
Sbjct:   24 EKVQAMYIWIDGTGEHLRCKTRTLDHEPKSLEDLPEWNFDGSSTFQAEGSNSDMYLRPAAMFRDPFRKDPNKLVLCEVFKYNRQSADTNLRHTCRRI 120          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA_ACOCA (Glutamine synthetase OS=Acomys cahirinus GN=GLUL PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 3.623e-17
Identity = 41/97 (42.27%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  149 DKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 439
            +K+ A YIW+  +G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH+  +I
Sbjct:   24 EKVQAMYIWVDGTGEGLRCKTRTLDCEPKCVEELPEWNFDGSSTFQSEGSNSDMYLSPVAMFRDPFRKEPNKLVFCEVFKYNRKPAETNLRHSCKRI 120          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA_CRIGR (Glutamine synthetase OS=Cricetulus griseus GN=GLUL PE=2 SV=4)

HSP 1 Score: 84.3445 bits (207), Expect = 2.348e-16
Identity = 40/97 (41.24%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  149 DKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 439
            +K+ A YIW+  +G  +R K RTL        +LP+WN+DGSST Q+   +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH   +I
Sbjct:   24 EKVQAMYIWVDGTGEGLRCKTRTLDCEPKCVEELPEWNFDGSSTFQSESSNSDMYLSPVAMFRDPFRKEPNKLVFCEVFKYNQKPAETNLRHTCKRI 120          
BLAST of FC869206 vs. ExPASy Swiss-Prot
Match: GLNA_XENLA (Glutamine synthetase OS=Xenopus laevis GN=glul PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.554e-15
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = 2
Query:  149 DKIIAEYIWIGRSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 439
            +K+   Y+WI  +G  +R K RTL        ++P+WN+DGSST QA G +S++ L P  +F+DPF    N LVMC+      +   TN RH   KI
Sbjct:   24 EKVQVTYVWIDGTGEGVRCKTRTLDQEPKTIDEIPEWNFDGSSTHQAEGSNSDMYLIPVQMFRDPFCLDPNKLVMCEVLKYNRKSAETNLRHTCKKI 120          
The following BLAST results are available for this feature:
BLAST of FC869206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GLNA_HUMAN7.299e-1843.30Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 ... [more]
GLNA_PIG9.533e-1843.30Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV... [more]
GLNA_MOUSE9.533e-1842.27Glutamine synthetase OS=Mus musculus GN=Glul PE=1 ... [more]
GLNA_RAT1.245e-1743.30Glutamine synthetase OS=Rattus norvegicus GN=Glul ... [more]
GLNA_CAEEL1.626e-1749.49Probable glutamine synthetase OS=Caenorhabditis el... [more]
GLNA_MACFA2.774e-1743.88Glutamine synthetase OS=Macaca fascicularis GN=GLU... [more]
GLNA_CHICK2.774e-1743.30Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2... [more]
GLNA_ACOCA3.623e-1742.27Glutamine synthetase OS=Acomys cahirinus GN=GLUL P... [more]
GLNA_CRIGR2.348e-1641.24Glutamine synthetase OS=Cricetulus griseus GN=GLUL... [more]
GLNA_XENLA7.554e-1540.21Glutamine synthetase OS=Xenopus laevis GN=glul PE=... [more]

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Properties
Property NameValue
Genbank descriptionC31009F08EF AbioticL1 Citrus clementina cDNA clone C31009F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869206 ID=FC869206; Name=FC869206; organism=Citrus clementina; type=EST; length=443bp
GGGATCACGTCTCTGTGTAGTCTCATTAACATCCCTTCAATCACAGCAAT
CTCATTACCAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAAC
ATGTCTCTGCTCTCAGATCTCCTTAACCTTAACCTCTCAGAATCCACTGA
CAAGATCATCGCTGAGTACATATGGATCGGTAGATCTGGCATGGACATGA
GGAGCAAAGCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTG
CCTAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGA
TAGTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGA
GAGGCAACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAA
CCAATTCCAACAAACAAAAGACATGCAGCTGCCAAGATTTTCA
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