FC869209

Overview
NameFC869209
Unique NameFC869209
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length345
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9450 contig Ccv1_Contig9450:347..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_SYNY3 (Cysteine synthase OS=Synechocystis sp. (strain PCC 6803) GN=cysK PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 5.622e-27
Identity = 59/114 (51.75%), Postives = 82/114 (71.93%), Query Frame = 1
Query:    4 ATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            A +   L+  N    ++  +    I  AEQ+GLI PGK++L+EPTSGNTGI LA +AA+KGY+LILTMP +MS ERR +LKA+GA+L LT  ++GM G +++A+E+  S PNAY
Sbjct:   30 AKIVVKLEGMNPAASVKDRIGINMINRAEQEGLIEPGKTLLIEPTSGNTGIALAMVAAAKGYQLILTMPETMSQERRAMLKAYGAKLELTPGSEGMGGCIRRAQELAESLPNAY 143          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: SRPG_SYNE7 (Cysteine synthase, plasmid OS=Synechococcus elongatus (strain PCC 7942) GN=srpG PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.252e-26
Identity = 62/114 (54.39%), Postives = 83/114 (72.81%), Query Frame = 1
Query:    4 ATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            AT+ A ++  N    ++  + +  I DAEQ+GL+ PGK  L+EPTSGNTGI LAF+AA++G  L LTMP +MSLERR LL A+GA+LVLT+  KGM GAV++AE+I  S P+ Y
Sbjct:   32 ATVLAKIEGRNPAYSVKCRIGAAMIWDAEQRGLLGPGKE-LIEPTSGNTGIALAFVAAARGIPLTLTMPETMSLERRKLLAAYGAKLVLTEGVKGMTGAVRRAEDIAASDPDRY 144          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_FLAS3 (Cysteine synthase OS=Flavobacterium sp. (strain K3-15 / DSM ID92-509) GN=cysK PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.029e-25
Identity = 56/90 (62.22%), Postives = 70/90 (77.78%), Query Frame = 1
Query:   76 IADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            I DAE KGL+    +I +EPTSGNTGIGLA +AA KGYKLIL MP SMS+ERR +++A+GAE VLT   KGMKGA++KA E+   TPN++
Sbjct:   50 IEDAEAKGLLNKDSTI-IEPTSGNTGIGLALVAAVKGYKLILVMPESMSIERRKIMEAYGAEFVLTPREKGMKGAIEKANELAEETPNSW 138          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_STRP6 (Cysteine synthase OS=Streptococcus pyogenes serotype M6 GN=cysK PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 3.771e-23
Identity = 52/106 (49.06%), Postives = 79/106 (74.53%), Query Frame = 1
Query:    4 ATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEI 321
            A ++  L+++N    ++  +    I  AE +GLI+PG  +++EPTSGNTGIGLA++ A+KGY++I+ MP +MSLERR +++A+GAELVLT  A+GMKGA+ K E +
Sbjct:   29 ADVYVKLEAFNPGSSVKDRIALSMIEAAEAEGLISPG-DVIIEPTSGNTGIGLAWVGAAKGYRVIIVMPETMSLERRQIIQAYGAELVLTPGAEGMKGAIAKTETL 133          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_MYCTU (Cysteine synthase A OS=Mycobacterium tuberculosis GN=cysK PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.771e-23
Identity = 55/107 (51.40%), Postives = 77/107 (71.96%), Query Frame = 1
Query:    1 VATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEI 321
            VA + A L+ +N    ++  +    +  AEQ GLI P  +I++EPTSGNTGI LA + A++GY+ +LTMP +MSLERR+LL+A+GAEL+LT  A GM GA+ KAEE+
Sbjct:   27 VADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADGMSGAIAKAEEL 132          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_MYCBO (Cysteine synthase A OS=Mycobacterium bovis GN=cysK PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.771e-23
Identity = 55/107 (51.40%), Postives = 77/107 (71.96%), Query Frame = 1
Query:    1 VATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEI 321
            VA + A L+ +N    ++  +    +  AEQ GLI P  +I++EPTSGNTGI LA + A++GY+ +LTMP +MSLERR+LL+A+GAEL+LT  A GM GA+ KAEE+
Sbjct:   27 VADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADGMSGAIAKAEEL 132          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_STAES (Cysteine synthase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=cysK PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.925e-23
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    4 ATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEI 321
            A ++  L+  N    ++  +    I  AE++G I PG +I VEPTSGNTGIGLAF+ A+KGYK + TMP +MS ERR LLKA+GAELVLT  ++ MKGA++KA+E+
Sbjct:   30 ADIYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKEL 134          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_STAEQ (Cysteine synthase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=cysK PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.925e-23
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    4 ATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEI 321
            A ++  L+  N    ++  +    I  AE++G I PG +I VEPTSGNTGIGLAF+ A+KGYK + TMP +MS ERR LLKA+GAELVLT  ++ MKGA++KA+E+
Sbjct:   30 ADIYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKEL 134          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_STAAW (Cysteine synthase OS=Staphylococcus aureus (strain MW2) GN=cysK PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.432e-23
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    4 ATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEI 321
            A ++  L+  N    ++  +    I  AE++G I PG +I VEPTSGNTGIGLAF+ A+KGYK + TMP +MS ERR LLKA+GAELVLT  ++ MKGA++KA+E+
Sbjct:   30 ADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKEL 134          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_STAAS (Cysteine synthase OS=Staphylococcus aureus (strain MSSA476) GN=cysK PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.432e-23
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    4 ATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEI 321
            A ++  L+  N    ++  +    I  AE++G I PG +I VEPTSGNTGIGLAF+ A+KGYK + TMP +MS ERR LLKA+GAELVLT  ++ MKGA++KA+E+
Sbjct:   30 ADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKEL 134          
The following BLAST results are available for this feature:
BLAST of FC869209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CYSK_SYNY35.622e-2751.75Cysteine synthase OS=Synechocystis sp. (strain PCC... [more]
SRPG_SYNE71.252e-2654.39Cysteine synthase, plasmid OS=Synechococcus elonga... [more]
CYSK_FLAS34.029e-2562.22Cysteine synthase OS=Flavobacterium sp. (strain K3... [more]
CYSK_STRP63.771e-2349.06Cysteine synthase OS=Streptococcus pyogenes seroty... [more]
CYSK_MYCTU3.771e-2351.40Cysteine synthase A OS=Mycobacterium tuberculosis ... [more]
CYSK_MYCBO3.771e-2351.40Cysteine synthase A OS=Mycobacterium bovis GN=cysK... [more]
CYSK_STAES4.925e-2352.83Cysteine synthase OS=Staphylococcus epidermidis (s... [more]
CYSK_STAEQ4.925e-2352.83Cysteine synthase OS=Staphylococcus epidermidis (s... [more]
CYSK_STAAW6.432e-2352.83Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAS6.432e-2352.83Cysteine synthase OS=Staphylococcus aureus (strain... [more]

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Properties
Property NameValue
Genbank descriptionC31009F11EF AbioticL1 Citrus clementina cDNA clone C31009F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869209 ID=FC869209; Name=FC869209; organism=Citrus clementina; type=EST; length=345bp
GTTGCAACATTGTTCGCCAGCTTGAAATCATGGAACCATGTTGTAGTGTT
AAGGACAGGATTGGTTTCAGTATCGATAGCTGATGCCGAGCAAAAAGGAC
TAATAACGCCTGGAAAGAGTATTCTTGTAGAGCCCACTAGTGGAAACACT
GGAATTGGCCTTGCTTTCATAGCTGCTTCGAAAGGATATAAGCTCATTTT
GACTATGCCAGCCTCAATGAGCTTGGAAAGGAGAGTTCTTCTGAAAGCAT
TTGGAGCTGAGCTTGTATTAACTGATTCAGCAAAAGGCATGAAGGGGGCT
GTGCAGAAAGCTGAAGAAATTTTGAATAGCACACCTAATGCATAT
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