FC869209

Overview
NameFC869209
Unique NameFC869209
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length345
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_STAAR (Cysteine synthase OS=Staphylococcus aureus (strain MRSA252) GN=cysK PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.432e-23
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    4 ATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEI 321
            A ++  L+  N    ++  +    I  AE++G I PG +I VEPTSGNTGIGLAF+ A+KGYK + TMP +MS ERR LLKA+GAELVLT  ++ MKGA++KA+E+
Sbjct:   30 ADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKEL 134          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_STAAN (Cysteine synthase OS=Staphylococcus aureus (strain N315) GN=cysK PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.432e-23
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    4 ATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEI 321
            A ++  L+  N    ++  +    I  AE++G I PG +I VEPTSGNTGIGLAF+ A+KGYK + TMP +MS ERR LLKA+GAELVLT  ++ MKGA++KA+E+
Sbjct:   30 ADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKEL 134          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_STAAM (Cysteine synthase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=cysK PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.432e-23
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    4 ATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEI 321
            A ++  L+  N    ++  +    I  AE++G I PG +I VEPTSGNTGIGLAF+ A+KGYK + TMP +MS ERR LLKA+GAELVLT  ++ MKGA++KA+E+
Sbjct:   30 ADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKEL 134          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_STAAC (Cysteine synthase OS=Staphylococcus aureus (strain COL) GN=cysK PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.432e-23
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    4 ATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEI 321
            A ++  L+  N    ++  +    I  AE++G I PG +I VEPTSGNTGIGLAF+ A+KGYK + TMP +MS ERR LLKA+GAELVLT  ++ MKGA++KA+E+
Sbjct:   30 ADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKEL 134          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_MYCLE (Cysteine synthase A OS=Mycobacterium leprae GN=cysK PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.432e-23
Identity = 54/110 (49.09%), Postives = 78/110 (70.91%), Query Frame = 1
Query:    1 VATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNS 330
            +A + A L+S+N    ++  +    I  AE+ GLI P  ++++EPTSGNTGI LA + A++GY  +LTMP +MS+ERR+LL+A+GAEL+LT  A GM GA+ KAEE+  S
Sbjct:   27 LADVVAKLESFNPANSVKDRIGVAMIDTAEEAGLIKPD-TVILEPTSGNTGIALAMVCAARGYHCVLTMPETMSIERRMLLRAYGAELILTPGADGMSGAIAKAEELAKS 135          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_BACSU (Cysteine synthase OS=Bacillus subtilis GN=cysK PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 9.345e-23
Identity = 54/90 (60.00%), Postives = 70/90 (77.78%), Query Frame = 1
Query:   52 RTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEI 321
            R GL  +  A  E++G +  G +I +EPTSGNTGIGLA +AA+KG K IL MP +MS+ERR LL+A+GAELVLT  A+GMKGA++KAEE+
Sbjct:   47 RIGLAMIEAA--EKEGKLKAGNTI-IEPTSGNTGIGLAMVAAAKGLKAILVMPDTMSMERRNLLRAYGAELVLTPGAEGMKGAIKKAEEL 133          

HSP 2 Score: 25.409 bits (54), Expect = 9.345e-23
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 3
Query:    6 NIVRQLEIMEPCCSVKDRIGFSI 74
            ++  +LE M P  SVKDRIG ++
Sbjct:   30 DVYLKLEYMNPGSSVKDRIGLAM 52          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_HAEIN (Cysteine synthase OS=Haemophilus influenzae GN=cysK PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.192e-22
Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 1
Query:   85 AEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            AE+ G +T GK I V+ TSGNTGI LA++AA++GYK+ LTMP +MSLER+ LL   G  LVLT+ AKGMKGA+ KAEEI+ S P+ Y
Sbjct:   53 AEKDGTLTKGKEI-VDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRY 138          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSM_BACSU (Probable cysteine synthase OS=Bacillus subtilis GN=ytkP PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.445e-22
Identity = 54/114 (47.37%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    4 ATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            A ++  L+ +N    ++       I +AEQ GL+ PG S+++EPTSGNTGIGLA  AA++GYK IL MP +M+ ER  LLKA+GAE+VLT   + M G+++KA+E+    PN+Y
Sbjct:   29 AQVYLKLEFFNPSGSVKDRAAYQMIIEAEQNGLLKPG-SVIIEPTSGNTGIGLAMNAAARGYKAILVMPDTMTKERINLLKAYGAEVVLTPGEERMPGSIKKAKELAEQIPNSY 141          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_NEIMB (Cysteine synthase OS=Neisseria meningitidis serogroup B GN=cysK PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.213e-21
Identity = 51/114 (44.74%), Postives = 79/114 (69.30%), Query Frame = 1
Query:    4 ATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            A +   L+ +N    ++  +    I  AE+ G I    +++VE TSGNTG+GLA + A++GYKL +TMP SMS ER++LL+AFGAEL+LT +A+GM GA+ KA+ ++++ P+ Y
Sbjct:   28 AEVAVKLEFFNPGSSVKDRIAEAMIEGAEKAGKINKN-TVIVEATSGNTGVGLAMVCAARGYKLAITMPESMSKERKMLLRAFGAELILTPAAEGMAGAIAKAKSLVDAHPDTY 140          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAI (Cysteine synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=cysK PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.135e-19
Identity = 43/74 (58.11%), Postives = 59/74 (79.73%), Query Frame = 1
Query:  124 LVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            L+E TSGNTGI LA++AAS+ Y+L LTMP +MS+ER+ +LK+ GAEL+LTD   GMKGA+ KA +I++  P+ Y
Sbjct:   65 LIEATSGNTGIALAYVAASRNYRLTLTMPETMSIERKKILKSLGAELILTDGRYGMKGAISKANDIISRNPSKY 138          
The following BLAST results are available for this feature:
BLAST of FC869209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CYSK_STAAR6.432e-2352.83Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAN6.432e-2352.83Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAM6.432e-2352.83Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAC6.432e-2352.83Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_MYCLE6.432e-2349.09Cysteine synthase A OS=Mycobacterium leprae GN=cys... [more]
CYSK_BACSU9.345e-2360.00Cysteine synthase OS=Bacillus subtilis GN=cysK PE=... [more]
CYSK_HAEIN3.192e-2260.92Cysteine synthase OS=Haemophilus influenzae GN=cys... [more]
CYSM_BACSU5.445e-2247.37Probable cysteine synthase OS=Bacillus subtilis GN... [more]
CYSK_NEIMB1.213e-2144.74Cysteine synthase OS=Neisseria meningitidis serogr... [more]
CYSK_BUCAI1.135e-1958.11Cysteine synthase OS=Buchnera aphidicola subsp. Ac... [more]

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Properties
Property NameValue
Genbank descriptionC31009F11EF AbioticL1 Citrus clementina cDNA clone C31009F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869209 ID=FC869209; Name=FC869209; organism=Citrus clementina; type=EST; length=345bp
GTTGCAACATTGTTCGCCAGCTTGAAATCATGGAACCATGTTGTAGTGTT
AAGGACAGGATTGGTTTCAGTATCGATAGCTGATGCCGAGCAAAAAGGAC
TAATAACGCCTGGAAAGAGTATTCTTGTAGAGCCCACTAGTGGAAACACT
GGAATTGGCCTTGCTTTCATAGCTGCTTCGAAAGGATATAAGCTCATTTT
GACTATGCCAGCCTCAATGAGCTTGGAAAGGAGAGTTCTTCTGAAAGCAT
TTGGAGCTGAGCTTGTATTAACTGATTCAGCAAAAGGCATGAAGGGGGCT
GTGCAGAAAGCTGAAGAAATTTTGAATAGCACACCTAATGCATAT
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