FC869209

Overview
NameFC869209
Unique NameFC869209
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length345
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAP (Cysteine synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=cysK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.303e-19
Identity = 51/112 (45.54%), Postives = 72/112 (64.29%), Query Frame = 1
Query:   10 LFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            + A ++S N    ++  + +  I DAE+KG +     I +E TSGNTGI LA++AA++ Y L L MP SMS+ERR LLK+ GA L+LT+   GMKGA+ KA EI++     Y
Sbjct:   28 ILAKIESRNPSFSVKCRIGANMIWDAEKKGRLNKNIEI-IEATSGNTGIALAYVAAARNYSLTLIMPDSMSIERRKLLKSLGAHLILTNGKHGMKGAISKANEIVSLNTKRY 138          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSM_ECOLI (Cysteine synthase B OS=Escherichia coli (strain K12) GN=cysM PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.274e-17
Identity = 45/84 (53.57%), Postives = 60/84 (71.43%), Query Frame = 1
Query:   76 IADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILN 327
            I +AE++G I PG  +L+E TSGNTGI LA IAA KGY++ L MP +MS ERR  ++A+GAEL+L    +GM+GA   A E+ N
Sbjct:   49 IVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMAN 131          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSM_CAMJE (Cysteine synthase B OS=Campylobacter jejuni GN=cysM PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.888e-17
Identity = 45/74 (60.81%), Postives = 52/74 (70.27%), Query Frame = 1
Query:  124 LVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            +VE TSGNTGI LA I A  G K I  MP SMSLERR ++  FGA L LT +  GMKGAV KA EIL +TPN++
Sbjct:   63 IVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMITLFGARLELTPANLGMKGAVDKANEILLNTPNSF 136          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSM_SALTY (Cysteine synthase B OS=Salmonella typhimurium GN=cysM PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.418e-16
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:   76 IADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGA 300
            I +AE++G I PG  +L+E TSGNTGI LA IAA KGY++ L MP +MS ERR  ++A+GAEL+L    +GM+GA
Sbjct:   49 IVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGA 122          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CBS_YEAST (Cystathionine beta-synthase OS=Saccharomyces cerevisiae GN=CYS4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.831e-16
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 1
Query:   10 LFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT------DSAKGMKGAVQKAEE 318
            ++A L+ +N    ++  +    + +AE  G I P +S L+EPTSGNTGIGLA I A KGY+ I+T+P  MS E+  +LKA GAE++ T      DS +   G  +K E+
Sbjct:   39 IYAKLELYNPGGSIKDRIAKSMVEEAEASGRIHPSRSTLIEPTSGNTGIGLALIGAIKGYRTIITLPEKMSNEKVSVLKALGAEIIRTPTAAAWDSPESHIGVAKKLEK 147          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSM_MYCTU (Cysteine synthase B OS=Mycobacterium tuberculosis GN=cysM PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.780e-15
Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   10 LFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPN 339
            L+A L+  N    ++       I  AE  GL+ PG +IL EPTSGNTGI LA  A  KGY+LI  MP + S+ERR LL+ +GA+++ + +  G   AV  A+E+  + P+
Sbjct:   37 LWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPS 145          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSM_MYCBO (Cysteine synthase B OS=Mycobacterium bovis GN=cysM PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.780e-15
Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   10 LFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPN 339
            L+A L+  N    ++       I  AE  GL+ PG +IL EPTSGNTGI LA  A  KGY+LI  MP + S+ERR LL+ +GA+++ + +  G   AV  A+E+  + P+
Sbjct:   37 LWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPS 145          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSM_AQUAE (Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.780e-15
Identity = 44/112 (39.29%), Postives = 69/112 (61.61%), Query Frame = 1
Query:   10 LFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            ++A L+S+N    ++         DA ++GLI  GK ++++ TSGNTGI LA + A+ G  + L MPA++S ER+ ++KAFGA+L LTD  +G  GA+    E++   P  Y
Sbjct:   51 IWAKLESFNPGGSVKDRPALSMFLDALKRGLIKEGK-VVIDATSGNTGIALAMVGAALGVPVELAMPANVSEERKKIIKAFGAKLYLTDPLEGTDGAILFVRELVQKYPEKY 161          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSM_PSEAE (Cysteine synthase B OS=Pseudomonas aeruginosa GN=cysM PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.436e-14
Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    7 TLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEI 321
            TL   L+  N    ++       I  AE +G I PG + L+E TSGNTGI LA  AA KGYK+IL MP + + ER+  + A+GAEL+L    +GM+GA   A+++
Sbjct:   30 TLLVKLEGNNPAGSVKDRPALSMITRAELRGDIRPGDT-LIEATSGNTGIALAMAAAIKGYKMILIMPDNSTAERKAAMTAYGAELILVSKEEGMEGARDLADKL 133          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CBS_DICDI (Cystathionine beta-synthase OS=Dictyostelium discoideum GN=cysB PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.537e-14
Identity = 42/93 (45.16%), Postives = 61/93 (65.59%), Query Frame = 1
Query:   76 IADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGM---KGAVQKAEEILNSTPNAY 345
            I DAE+ G I  G + L+EPTSGNTGIGLA  AA KGYK+I+T+P  MS E+  +LKA GAE++ T +       +  +  A+++ +  PN++
Sbjct:   81 IVDAEESGRIKKGDT-LIEPTSGNTGIGLALTAAIKGYKMIITLPEKMSQEKVDVLKALGAEIIRTPTEAAFDAPESHIGVAKKLNSEIPNSH 172          

HSP 2 Score: 22.3274 bits (46), Expect = 2.537e-14
Identity = 10/21 (47.62%), Postives = 12/21 (57.14%), Query Frame = 3
Query:    3 CNIVRQLEIMEPCCSVKDRIG 65
            C +V + E      SVKDRIG
Sbjct:   57 CELVAKCEFFNAGGSVKDRIG 77          
The following BLAST results are available for this feature:
BLAST of FC869209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CYSK_BUCAP3.303e-1945.54Cysteine synthase OS=Buchnera aphidicola subsp. Sc... [more]
CYSM_ECOLI5.274e-1753.57Cysteine synthase B OS=Escherichia coli (strain K1... [more]
CYSM_CAMJE6.888e-1760.81Cysteine synthase B OS=Campylobacter jejuni GN=cys... [more]
CYSM_SALTY3.418e-1656.00Cysteine synthase B OS=Salmonella typhimurium GN=c... [more]
CBS_YEAST5.831e-1641.28Cystathionine beta-synthase OS=Saccharomyces cerev... [more]
CYSM_MYCTU3.780e-1541.82Cysteine synthase B OS=Mycobacterium tuberculosis ... [more]
CYSM_MYCBO3.780e-1541.82Cysteine synthase B OS=Mycobacterium bovis GN=cysM... [more]
CYSM_AQUAE3.780e-1539.29Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3... [more]
CYSM_PSEAE1.436e-1442.86Cysteine synthase B OS=Pseudomonas aeruginosa GN=c... [more]
CBS_DICDI2.537e-1445.16Cystathionine beta-synthase OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionC31009F11EF AbioticL1 Citrus clementina cDNA clone C31009F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869209 ID=FC869209; Name=FC869209; organism=Citrus clementina; type=EST; length=345bp
GTTGCAACATTGTTCGCCAGCTTGAAATCATGGAACCATGTTGTAGTGTT
AAGGACAGGATTGGTTTCAGTATCGATAGCTGATGCCGAGCAAAAAGGAC
TAATAACGCCTGGAAAGAGTATTCTTGTAGAGCCCACTAGTGGAAACACT
GGAATTGGCCTTGCTTTCATAGCTGCTTCGAAAGGATATAAGCTCATTTT
GACTATGCCAGCCTCAATGAGCTTGGAAAGGAGAGTTCTTCTGAAAGCAT
TTGGAGCTGAGCTTGTATTAACTGATTCAGCAAAAGGCATGAAGGGGGCT
GTGCAGAAAGCTGAAGAAATTTTGAATAGCACACCTAATGCATAT
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