FC869209

Overview
NameFC869209
Unique NameFC869209
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length345
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9450 contig Ccv1_Contig9450:347..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CBS_RAT (Cystathionine beta-synthase OS=Rattus norvegicus GN=Cbs PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.128e-14
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 1
Query:   76 IADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT------DSAKGMKGAVQKAEEILNSTPNAY 345
            I DAE+ G + PG +I +EPTSGNTGIGLA  AA KGY+ I+ MP  MS+E+  +L+A GAE+V T      DS +   G    A  + N  PN++
Sbjct:  124 IEDAERAGTLKPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGV---AWRLKNEIPNSH 215          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CBS_RABIT (Cystathionine beta-synthase OS=Oryctolagus cuniculus GN=CBS PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 9.309e-14
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   76 IADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT 273
            I DAE+ G + PG +I +EPTSGNTGIGLA  AA KGY+ I+ MP  MSLE+  +L+A GAE+V T
Sbjct:  127 IEDAERAGTLRPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSLEKVDVLRALGAEIVRT 191          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSM_PSESY (Cysteine synthase B (Fragment) OS=Pseudomonas syringae pv. syringae GN=cysM PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.216e-13
Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   76 IADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEI 321
            I  AE +G I PG + L+E TSGNTGI LA  AA KGY++IL MP + S ER+  + A+GAEL+      GM+GA   AE +
Sbjct:   53 ITRAELRGQIHPGDT-LIEATSGNTGIALAMAAAIKGYRMILIMPDNSSAERKAAMTAYGAELISVSKDDGMEGARDLAERM 133          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CBS_MOUSE (Cystathionine beta-synthase OS=Mus musculus GN=Cbs PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.216e-13
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 1
Query:   76 IADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT------DSAKGMKGAVQKAEEILNSTPNAY 345
            I DAE+ G + PG +I +EPTSGNTGIGLA  AA KGY+ I+ MP  MS+E+  +L+A GAE+V T      DS +   G    A  + N  PN++
Sbjct:  124 IEDAERAGNLKPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGV---AWRLKNEIPNSH 215          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: MCCA_BACSU (O-acetylserine dependent cystathionine beta-synthase OS=Bacillus subtilis GN=mccA PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.709e-13
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 1
Query:   10 LFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            ++A L+  N    ++  L  + I DA   G + PG  +++E T+GNTGIGLA  A   G K I  +P   S E++ +++A GA ++ T    GM+GA+QKA ++     N+Y
Sbjct:   30 VYAKLEMMNPGGSIKDRLGDMLIRDALDSGKVKPG-GVIIEATAGNTGIGLALSARKYGLKAIFCVPEHFSREKQQIMQALGASIIHTPRQDGMQGAIQKAIQLETEIENSY 140          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CBS_MACFA (Cystathionine beta-synthase OS=Macaca fascicularis GN=CBS PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 4.620e-13
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   76 IADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT------DSAKGMKGAVQKAEEILNSTPNAY 345
            I DAE+ G + PG +I +EPTSGNTGIGLA  AA +GY+ I+ MP  MS E+  +L+A GAE+V T      DS +   G    A  + N  PN++
Sbjct:  127 IEDAERAGTLKPGDTI-IEPTSGNTGIGLALTAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGV---AWRLKNEIPNSH 218          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CBS_HUMAN (Cystathionine beta-synthase OS=Homo sapiens GN=CBS PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.620e-13
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   76 IADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT------DSAKGMKGAVQKAEEILNSTPNAY 345
            I DAE+ G + PG +I +EPTSGNTGIGLA  AA +GY+ I+ MP  MS E+  +L+A GAE+V T      DS +   G    A  + N  PN++
Sbjct:  127 IEDAERDGTLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGV---AWRLKNEIPNSH 218          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSM_HELPY (Cysteine synthase OS=Helicobacter pylori GN=cysM PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.034e-13
Identity = 37/114 (32.46%), Postives = 69/114 (60.53%), Query Frame = 1
Query:    4 ATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            + ++A L+  N    ++  L    I +  + G IT  K+ ++EPT+GNTGI LA +A     K I  +P   S E++ +++A GA ++ T +++G+ GA++K++E+  S P++Y
Sbjct:   30 SAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKIT-SKTTIIEPTAGNTGIALALVAIKHHLKTIFVVPEKFSTEKQQIMRALGALVINTPTSEGISGAIKKSKELAESIPDSY 142          
BLAST of FC869209 vs. ExPASy Swiss-Prot
Match: CYSM_HELPJ (Cysteine synthase OS=Helicobacter pylori J99 GN=cysM PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.138e-11
Identity = 37/114 (32.46%), Postives = 68/114 (59.65%), Query Frame = 1
Query:    4 ATLFASLKSWNHVVVLRTGLVSVSIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAY 345
            + ++A L+  N    ++  L    I +A +   IT   +I +EPT+GNTGI LA +A     K I  +P   S E++ +++A GA ++ T +++G+ GA++K++E+  S P++Y
Sbjct:   29 SAIYAKLEHLNPGGSVKDRLGQYLIKEAFRTRKITSTTTI-IEPTAGNTGIALALVAIKHHLKTIFVVPKKFSTEKQQIMRALGALVINTPTSEGISGAIKKSKELAESIPDSY 141          
The following BLAST results are available for this feature:
BLAST of FC869209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CBS_RAT7.128e-1446.88Cystathionine beta-synthase OS=Rattus norvegicus G... [more]
CBS_RABIT9.309e-1459.09Cystathionine beta-synthase OS=Oryctolagus cunicul... [more]
CYSM_PSESY1.216e-1350.00Cysteine synthase B (Fragment) OS=Pseudomonas syri... [more]
CBS_MOUSE1.216e-1346.88Cystathionine beta-synthase OS=Mus musculus GN=Cbs... [more]
MCCA_BACSU2.709e-1335.71O-acetylserine dependent cystathionine beta-syntha... [more]
CBS_MACFA4.620e-1345.83Cystathionine beta-synthase OS=Macaca fascicularis... [more]
CBS_HUMAN4.620e-1345.83Cystathionine beta-synthase OS=Homo sapiens GN=CBS... [more]
CYSM_HELPY6.034e-1332.46Cysteine synthase OS=Helicobacter pylori GN=cysM P... [more]
CYSM_HELPJ1.138e-1132.46Cysteine synthase OS=Helicobacter pylori J99 GN=cy... [more]

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Properties
Property NameValue
Genbank descriptionC31009F11EF AbioticL1 Citrus clementina cDNA clone C31009F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869209 ID=FC869209; Name=FC869209; organism=Citrus clementina; type=EST; length=345bp
GTTGCAACATTGTTCGCCAGCTTGAAATCATGGAACCATGTTGTAGTGTT
AAGGACAGGATTGGTTTCAGTATCGATAGCTGATGCCGAGCAAAAAGGAC
TAATAACGCCTGGAAAGAGTATTCTTGTAGAGCCCACTAGTGGAAACACT
GGAATTGGCCTTGCTTTCATAGCTGCTTCGAAAGGATATAAGCTCATTTT
GACTATGCCAGCCTCAATGAGCTTGGAAAGGAGAGTTCTTCTGAAAGCAT
TTGGAGCTGAGCTTGTATTAACTGATTCAGCAAAAGGCATGAAGGGGGCT
GTGCAGAAAGCTGAAGAAATTTTGAATAGCACACCTAATGCATAT
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