FC869210

Overview
NameFC869210
Unique NameFC869210
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SV2A_RAT (Synaptic vesicle glycoprotein 2A OS=Rattus norvegicus GN=Sv2a PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 49/179 (27.37%), Postives = 77/179 (43.02%), Query Frame = 1
Query:  136 KMDDHRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNY-XXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTW 669
            + D   L    +  L   G G+FQ       GL   ++ +EV ++ FV P+ + +          +  +V+ GM+VGA+ WG ++D  GRR  +L    V  V    S+F   Y                   + FS+F EF+    RG+ +     FW  G V  AA+AW ++P   W
Sbjct:  142 RKDREELAQQYETILRECGHGRFQWTLYFVLGLALMADGVEVFVVGFVLPSAEKDMCLSDSNKGMLGLIVYLGMMVGAFLWGGLADRLGRRQCLLISLSVNSVFAFFSSFVQGYGTFLFCRLLSGVGIGGSIPIVFSYFSEFLAQEKRGEHLSWLCMFWMIGGVYAAAMAWAIIPHYGW 320          
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SV2A_MOUSE (Synaptic vesicle glycoprotein 2A OS=Mus musculus GN=Sv2a PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 49/179 (27.37%), Postives = 77/179 (43.02%), Query Frame = 1
Query:  136 KMDDHRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNY-XXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTW 669
            + D   L    +  L   G G+FQ       GL   ++ +EV ++ FV P+ + +          +  +V+ GM+VGA+ WG ++D  GRR  +L    V  V    S+F   Y                   + FS+F EF+    RG+ +     FW  G V  AA+AW ++P   W
Sbjct:  142 RKDREELAQQYETILRECGHGRFQWTLYFVLGLALMADGVEVFVVGFVLPSAEKDMCLSDSNKGMLGLIVYLGMMVGAFLWGGLADRLGRRQCLLISLSVNSVFAFFSSFVQGYGTFLFCRLLSGVGIGGSIPIVFSYFSEFLAQEKRGEHLSWLCMFWMIGGVYAAAMAWAIIPHYGW 320          
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SV2A_MACFA (Synaptic vesicle glycoprotein 2A OS=Macaca fascicularis GN=SV2A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.184e-15
Identity = 48/179 (26.82%), Postives = 77/179 (43.02%), Query Frame = 1
Query:  136 KMDDHRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNY-XXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTW 669
            + +   L    +  L   G G+FQ       GL   ++ +EV ++ FV P+ + +          +  +V+ GM+VGA+ WG ++D  GRR  +L    V  V    S+F   Y                   + FS+F EF+    RG+ +     FW  G V  AA+AW ++P   W
Sbjct:  142 RKEREELAQQYEAILRECGHGRFQWTLYFVLGLALMADGVEVFVVGFVLPSAEKDMCLSDSNKGMLGLIVYLGMMVGAFLWGGLADRLGRRQCLLISLSVNSVFAFFSSFVQGYGTFLFCRLLSGVGIGGSIPIVFSYFSEFLAQEKRGEHLSWLCMFWMIGGVYAAAMAWAIIPHYGW 320          
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SV2A_HUMAN (Synaptic vesicle glycoprotein 2A OS=Homo sapiens GN=SV2A PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.184e-15
Identity = 48/179 (26.82%), Postives = 77/179 (43.02%), Query Frame = 1
Query:  136 KMDDHRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNY-XXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTW 669
            + +   L    +  L   G G+FQ       GL   ++ +EV ++ FV P+ + +          +  +V+ GM+VGA+ WG ++D  GRR  +L    V  V    S+F   Y                   + FS+F EF+    RG+ +     FW  G V  AA+AW ++P   W
Sbjct:  142 RKEREELAQQYEAILRECGHGRFQWTLYFVLGLALMADGVEVFVVGFVLPSAEKDMCLSDSNKGMLGLIVYLGMMVGAFLWGGLADRLGRRQCLLISLSVNSVFAFFSSFVQGYGTFLFCRLLSGVGIGGSIPIVFSYFSEFLAQEKRGEHLSWLCMFWMIGGVYAAAMAWAIIPHYGW 320          
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SV2A_BOVIN (Synaptic vesicle glycoprotein 2A OS=Bos taurus GN=SV2A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.184e-15
Identity = 48/179 (26.82%), Postives = 77/179 (43.02%), Query Frame = 1
Query:  136 KMDDHRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNY-XXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTW 669
            + +   L    +  L   G G+FQ       GL   ++ +EV ++ FV P+ + +          +  +V+ GM+VGA+ WG ++D  GRR  +L    V  V    S+F   Y                   + FS+F EF+    RG+ +     FW  G V  AA+AW ++P   W
Sbjct:  142 RKEREELAQQYEAILRECGHGRFQWTLYFVLGLALMADGVEVFVVGFVLPSAEKDMCLSDSNKGMLGLIVYLGMMVGAFLWGGLADRLGRRQCLLISLSVNSVFAFFSSFVQGYGTFLFCRLLSGVGIGGSIPIVFSYFSEFLAQEKRGEHLSWLCMFWMIGGVYAAAMAWAIIPHYGW 320          
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SV2A_PONAB (Synaptic vesicle glycoprotein 2A OS=Pongo abelii GN=SV2A PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14
Identity = 45/159 (28.30%), Postives = 71/159 (44.65%), Query Frame = 1
Query:  196 GKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNY-XXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTW 669
            G+FQ       GL   ++ +EV ++ FV P+ + +          +  +V+ GM+VGA+ WG ++D  GRR  +L    V  V    S+F   Y                   + FS+F EF+    RG+ +     FW  G V  AA+AW ++P   W
Sbjct:  162 GRFQWTLYFVLGLALMADGVEVFVVGFVLPSAEKDMCLSDSNKGMLGLIVYLGMMVGAFLWGGLADRLGRRQCLLISLSVNSVFAFFSSFVQGYGTFLFCRLLSGVGIGGSIPIVFSYFSEFLAQEKRGEHLSWLCMFWMIGGVYAAAMAWAIIPHYGW 320          
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SV2C_RAT (Synaptic vesicle glycoprotein 2C OS=Rattus norvegicus GN=Sv2c PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.346e-13
Identity = 44/179 (24.58%), Postives = 79/179 (44.13%), Query Frame = 1
Query:  136 KMDDHRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNY-XXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTW 669
            + D+  L    +  +   G G+FQ       G+   ++ +EV ++ FV P+ +++          + ++V+ GM+VGA+ WG ++D  GR+ S+L    V      LS+F   Y                     FS+F E +    RG+ +     FW  G +  +A+AW ++P   W
Sbjct:  128 RADEEELAQQYELIIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSGWLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLLCRLLSGFGIGGAIPTVFSYFAEVLAREKRGEHLSWLCMFWMIGGIYASAMAWAIIPHYGW 306          
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SV2C_MOUSE (Synaptic vesicle glycoprotein 2C OS=Mus musculus GN=Sv2c PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.346e-13
Identity = 44/179 (24.58%), Postives = 79/179 (44.13%), Query Frame = 1
Query:  136 KMDDHRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNY-XXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTW 669
            + D+  L    +  +   G G+FQ       G+   ++ +EV ++ FV P+ +++          + ++V+ GM+VGA+ WG ++D  GR+ S+L    V      LS+F   Y                     FS+F E +    RG+ +     FW  G +  +A+AW ++P   W
Sbjct:  128 RADEEELAQQYELIIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSGWLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLVCRLLSGFGIGGAIPTVFSYFAEVLAREKRGEHLSWLCMFWMIGGIYASAMAWAIIPHYGW 306          
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SV2C_HUMAN (Synaptic vesicle glycoprotein 2C OS=Homo sapiens GN=SV2C PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.346e-13
Identity = 44/179 (24.58%), Postives = 79/179 (44.13%), Query Frame = 1
Query:  136 KMDDHRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNY-XXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTW 669
            + D+  L    +  +   G G+FQ       G+   ++ +EV ++ FV P+ +++          + ++V+ GM+VGA+ WG ++D  GR+ S+L    V      LS+F   Y                     FS+F E +    RG+ +     FW  G +  +A+AW ++P   W
Sbjct:  128 RADEEELAQQYELIIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSGWLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLFCRLLSGFGIGGAIPTVFSYFAEVLAREKRGEHLSWLCMFWMIGGIYASAMAWAIIPHYGW 306          
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: YCEI_BACSU (Putative metabolite transport protein yceI OS=Bacillus subtilis GN=yceI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12
Identity = 46/158 (29.11%), Postives = 73/158 (46.20%), Query Frame = 1
Query:  217 LAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNY-XXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLAL 687
            L  +GLGW  +AM+V ILSF+  A+  EW         I +V   GM  GA+ +GL++D  GR+   +   L   +   +SAF  +                    V  +   E V P  RG+ +V+  +FW  G ++ A +++ V+P   W+  L L
Sbjct:   13 LGVAGLGWLFDAMDVGILSFIIAALHVEWNLSPEEMKWIGSVNSIGMAAGAFLFGLLADRIGRKKVFIITLLCFSIGSGISAFVTSLSAFLILRFVIGMGLGGELPVASTLVSEAVVPEKRGRVIVLLESFWAVGWLAAALISYFVIPSFGWQAALLL 170          
The following BLAST results are available for this feature:
BLAST of FC869210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SV2A_RAT1.438e-1527.37Synaptic vesicle glycoprotein 2A OS=Rattus norvegi... [more]
SV2A_MOUSE1.438e-1527.37Synaptic vesicle glycoprotein 2A OS=Mus musculus G... [more]
SV2A_MACFA4.184e-1526.82Synaptic vesicle glycoprotein 2A OS=Macaca fascicu... [more]
SV2A_HUMAN4.184e-1526.82Synaptic vesicle glycoprotein 2A OS=Homo sapiens G... [more]
SV2A_BOVIN4.184e-1526.82Synaptic vesicle glycoprotein 2A OS=Bos taurus GN=... [more]
SV2A_PONAB2.076e-1428.30Synaptic vesicle glycoprotein 2A OS=Pongo abelii G... [more]
SV2C_RAT1.346e-1324.58Synaptic vesicle glycoprotein 2C OS=Rattus norvegi... [more]
SV2C_MOUSE1.346e-1324.58Synaptic vesicle glycoprotein 2C OS=Mus musculus G... [more]
SV2C_HUMAN1.346e-1324.58Synaptic vesicle glycoprotein 2C OS=Homo sapiens G... [more]
YCEI_BACSU9.645e-1229.11Putative metabolite transport protein yceI OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionC31009F12EF AbioticL1 Citrus clementina cDNA clone C31009F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869210 ID=FC869210; Name=FC869210; organism=Citrus clementina; type=EST; length=689bp
AGGGAGCCTCCTTCTTTAGAATTTATGTATTTCATATGATTTTCTGCTGT
ATAGCTTTAAGAATTGAGCTAGGACGTGCCCGTGACTCTGTGAAGGCAAT
AATTTCAAATTAATCTGCATGATACTTGCTATTCAAAGATGGATGATCAT
AGACTTGTGTACACGCTGGATGAAGCACTTACATTCATGGGGTTTGGGAA
GTTCCAAGGTCTCGCGCTTGCTTATTCTGGGCTCGGTTGGTTTTCAGAAG
CAATGGAGGTTATGATTCTCTCCTTTGTGGGACCTGCAGTGAAGTCTGAG
TGGGGATTGTCCTCAAGTGAAGAGAGCCTTATAACAACTGTTGTTTTTGC
TGGAATGTTAGTTGGCGCATATTCATGGGGCCTTATATCTGACATATATG
GAAGAAGGATGAGTATCCTTGGTGGAGCTTTAGTGACTTTTGTAGCTGGG
TTATTAAGTGCTTTTGCCCCTAACTACATATCATTGTTGATTCTTCGTGG
TTTGGCTGGTGCTGGCCTGGGCAGTGGGCATGTCTTCTTCTCCTGGTTTA
TGGAATTTGTTCCTCCTTCAAATCGAGGAAAGTGGATGGTCGTCTTTTCA
ACTTTCTGGACATTTGGGTCGGTTTCTGAGGCTGCACTTGCTTGGATCGT
CATGCCAATATTGACTTGGAGGTGGCTACTTGCTTTGTC
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