FC869210

Overview
NameFC869210
Unique NameFC869210
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SV2B_HUMAN (Synaptic vesicle glycoprotein 2B OS=Homo sapiens GN=SV2B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12
Identity = 41/177 (23.16%), Postives = 77/177 (43.50%), Query Frame = 1
Query:  142 DDHRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNY-XXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTW 669
            D+ +L +  +  +   G G+FQ +     GL   ++ +EV ++SF  P+ + +          +  +V+ GM+ GA+  G ++D  GR+  +     V      LS+F   Y                   + F++F EF+    RG+ +     FW  G +  +A+AW ++P   W
Sbjct:   87 DEEQLAHQYETIMDECGHGRFQWILFFVLGLALMADGVEVFVVSFALPSAEKDMCLSSSKKGMLGMIVYLGMMAGAFILGGLADKLGRKRVLSMSLAVNASFASLSSFVQGYGAFLFCRLISGIGIGGALPIVFAYFSEFLSREKRGEHLSWLGIFWMTGGLYASAMAWSIIPHYGW 263          
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SV2B_MOUSE (Synaptic vesicle glycoprotein 2B OS=Mus musculus GN=Sv2b PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 39/177 (22.03%), Postives = 75/177 (42.37%), Query Frame = 1
Query:  142 DDHRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNY-XXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTW 669
            D+  L +  +  +   G G+FQ       GL   ++ +E+ ++SF  P+ + +          +  +V+ GM+ GA+  G ++D  GR+  +     +      LS+F   Y                   + F++F EF+    RG+ +     FW  G +  +A+AW ++P   W
Sbjct:   87 DEEELAHQYETIIDECGHGRFQWTLFFVLGLALMADGVEIFVVSFALPSAEKDMCLSSSKKGMLGLIVYLGMMAGAFILGGLADKLGRKKVLSMSLAINASFASLSSFVQGYGAFLFCRLISGIGIGGSLPIVFAYFSEFLSREKRGEHLSWLGIFWMTGGIYASAMAWSIIPHYGW 263          
The following BLAST results are available for this feature:
BLAST of FC869210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SV2B_HUMAN9.645e-1223.16Synaptic vesicle glycoprotein 2B OS=Homo sapiens G... [more]
SV2B_MOUSE2.806e-1122.03Synaptic vesicle glycoprotein 2B OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionC31009F12EF AbioticL1 Citrus clementina cDNA clone C31009F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869210 ID=FC869210; Name=FC869210; organism=Citrus clementina; type=EST; length=689bp
AGGGAGCCTCCTTCTTTAGAATTTATGTATTTCATATGATTTTCTGCTGT
ATAGCTTTAAGAATTGAGCTAGGACGTGCCCGTGACTCTGTGAAGGCAAT
AATTTCAAATTAATCTGCATGATACTTGCTATTCAAAGATGGATGATCAT
AGACTTGTGTACACGCTGGATGAAGCACTTACATTCATGGGGTTTGGGAA
GTTCCAAGGTCTCGCGCTTGCTTATTCTGGGCTCGGTTGGTTTTCAGAAG
CAATGGAGGTTATGATTCTCTCCTTTGTGGGACCTGCAGTGAAGTCTGAG
TGGGGATTGTCCTCAAGTGAAGAGAGCCTTATAACAACTGTTGTTTTTGC
TGGAATGTTAGTTGGCGCATATTCATGGGGCCTTATATCTGACATATATG
GAAGAAGGATGAGTATCCTTGGTGGAGCTTTAGTGACTTTTGTAGCTGGG
TTATTAAGTGCTTTTGCCCCTAACTACATATCATTGTTGATTCTTCGTGG
TTTGGCTGGTGCTGGCCTGGGCAGTGGGCATGTCTTCTTCTCCTGGTTTA
TGGAATTTGTTCCTCCTTCAAATCGAGGAAAGTGGATGGTCGTCTTTTCA
ACTTTCTGGACATTTGGGTCGGTTTCTGAGGCTGCACTTGCTTGGATCGT
CATGCCAATATTGACTTGGAGGTGGCTACTTGCTTTGTC
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