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Overview
Name | FC869210 |
Unique Name | FC869210 |
Type | EST |
Organism | Citrus clementina (Clementine) |
Sequence length | 689 |
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SV2B_HUMAN (Synaptic vesicle glycoprotein 2B OS=Homo sapiens GN=SV2B PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12 Identity = 41/177 (23.16%), Postives = 77/177 (43.50%), Query Frame = 1 Query: 142 DDHRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNY-XXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTW 669
D+ +L + + + G G+FQ + GL ++ +EV ++SF P+ + + + +V+ GM+ GA+ G ++D GR+ + V LS+F Y + F++F EF+ RG+ + FW G + +A+AW ++P W
Sbjct: 87 DEEQLAHQYETIMDECGHGRFQWILFFVLGLALMADGVEVFVVSFALPSAEKDMCLSSSKKGMLGMIVYLGMMAGAFILGGLADKLGRKRVLSMSLAVNASFASLSSFVQGYGAFLFCRLISGIGIGGALPIVFAYFSEFLSREKRGEHLSWLGIFWMTGGLYASAMAWSIIPHYGW 263
BLAST of FC869210 vs. ExPASy Swiss-Prot
Match: SV2B_MOUSE (Synaptic vesicle glycoprotein 2B OS=Mus musculus GN=Sv2b PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11 Identity = 39/177 (22.03%), Postives = 75/177 (42.37%), Query Frame = 1 Query: 142 DDHRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNY-XXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTW 669
D+ L + + + G G+FQ GL ++ +E+ ++SF P+ + + + +V+ GM+ GA+ G ++D GR+ + + LS+F Y + F++F EF+ RG+ + FW G + +A+AW ++P W
Sbjct: 87 DEEELAHQYETIIDECGHGRFQWTLFFVLGLALMADGVEIFVVSFALPSAEKDMCLSSSKKGMLGLIVYLGMMAGAFILGGLADKLGRKKVLSMSLAINASFASLSSFVQGYGAFLFCRLISGIGIGGSLPIVFAYFSEFLSREKRGEHLSWLGIFWMTGGIYASAMAWSIIPHYGW 263
The following BLAST results are available for this feature:
BLAST of FC869210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 ( BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match Name | E-value | Identity | Description | |
SV2B_HUMAN | 9.645e-12 | 23.16 | Synaptic vesicle glycoprotein 2B OS=Homo sapiens G... | [more] |
SV2B_MOUSE | 2.806e-11 | 22.03 | Synaptic vesicle glycoprotein 2B OS=Mus musculus G... | [more] |
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Properties
Property Name | Value |
Genbank description | C31009F12EF AbioticL1 Citrus clementina cDNA clone C31009F12, mRNA sequence. |
Sequences
The
following sequences are available for this feature:
EST sequence >FC869210 ID=FC869210; Name=FC869210; organism=Citrus clementina; type=EST; length=689bp AGGGAGCCTCCTTCTTTAGAATTTATGTATTTCATATGATTTTCTGCTGT ATAGCTTTAAGAATTGAGCTAGGACGTGCCCGTGACTCTGTGAAGGCAAT AATTTCAAATTAATCTGCATGATACTTGCTATTCAAAGATGGATGATCAT AGACTTGTGTACACGCTGGATGAAGCACTTACATTCATGGGGTTTGGGAA GTTCCAAGGTCTCGCGCTTGCTTATTCTGGGCTCGGTTGGTTTTCAGAAG CAATGGAGGTTATGATTCTCTCCTTTGTGGGACCTGCAGTGAAGTCTGAG TGGGGATTGTCCTCAAGTGAAGAGAGCCTTATAACAACTGTTGTTTTTGC TGGAATGTTAGTTGGCGCATATTCATGGGGCCTTATATCTGACATATATG GAAGAAGGATGAGTATCCTTGGTGGAGCTTTAGTGACTTTTGTAGCTGGG TTATTAAGTGCTTTTGCCCCTAACTACATATCATTGTTGATTCTTCGTGG TTTGGCTGGTGCTGGCCTGGGCAGTGGGCATGTCTTCTTCTCCTGGTTTA TGGAATTTGTTCCTCCTTCAAATCGAGGAAAGTGGATGGTCGTCTTTTCA ACTTTCTGGACATTTGGGTCGGTTTCTGAGGCTGCACTTGCTTGGATCGT CATGCCAATATTGACTTGGAGGTGGCTACTTGCTTTGTC back to top
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