FC869212 | Citrus Genome Database

Overview


Name	FC869212
Unique Name	FC869212
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	401

Libraries


Library Name	Type
AbioticL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_SINMW (Chaperone protein dnaK OS=Sinorhizobium medicae (strain WSM419) GN=dnaK PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 7.286e-51
Identity = 98/133 (73.68%), Postives = 111/133 (83.46%), Query Frame = 2

Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GK+ KVIEN+EG+RTTPS+VAF + GE LVG PAKRQA TNP NTLF  KRLIGR F+DP TQ++  MV YKIV+A NGDAWVEA+ + YSPSQI A +L KMKETAESYLG+ V KAVITVPAYFNDAQRQA
Sbjct:   21 GKDAKVIENAEGARTTPSMVAFTEDGERLVGQPAKRQAVTNPENTLFAIKRLIGRTFEDPTTQKDKGMVPYKIVKADNGDAWVEAHDKSYSPSQISAMILQKMKETAESYLGEKVEKAVITVPAYFNDAQRQA 153

[Close]

BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: GRP75_PONAB (Stress-70 protein, mitochondrial OS=Pongo abelii GN=HSPA9 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.243e-50
Identity = 95/133 (71.43%), Postives = 112/133 (84.21%), Query Frame = 2

Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GK  KV+EN+EG+RTTPSVVAF   GE LVG PAKRQA TNP NT + TKRLIGR++DDP+ Q++++ V +KIVRA NGDAWVEA+G+ YSPSQIGAFVL KMKETAE+YLG +   AVITVPAYFND+QRQA
Sbjct:   72 GKQAKVLENAEGARTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQA 204

[Close]

BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: GRP75_HUMAN (Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 1.243e-50
Identity = 95/133 (71.43%), Postives = 112/133 (84.21%), Query Frame = 2

Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GK  KV+EN+EG+RTTPSVVAF   GE LVG PAKRQA TNP NT + TKRLIGR++DDP+ Q++++ V +KIVRA NGDAWVEA+G+ YSPSQIGAFVL KMKETAE+YLG +   AVITVPAYFND+QRQA
Sbjct:   72 GKQAKVLENAEGARTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQA 204

[Close]

BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: GRP75_BOVIN (Stress-70 protein, mitochondrial OS=Bos taurus GN=HSPA9 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.243e-50
Identity = 95/133 (71.43%), Postives = 112/133 (84.21%), Query Frame = 2

Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GK  KV+EN+EG+RTTPSVVAF   GE LVG PAKRQA TNP NT + TKRLIGR++DDP+ Q++++ V +KIVRA NGDAWVEA+G+ YSPSQIGAFVL KMKETAE+YLG +   AVITVPAYFND+QRQA
Sbjct:   72 GKQAKVLENAEGARTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQA 204

[Close]

BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_BEII9 (Chaperone protein dnaK OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dnaK PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.243e-50
Identity = 95/133 (71.43%), Postives = 110/133 (82.71%), Query Frame = 2

Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            G  PKVIEN+EG+RTTPS+VAF   GE LVG PAKRQ  TNP  T F  KRLIGR F+DP T++++ +V YKI +APNGDAWVEA+G+ YSPSQI AF+L KMKETAESYLG+ VS+AVITVPAYFNDAQRQA
Sbjct:   21 GTTPKVIENAEGARTTPSIVAFTDDGERLVGQPAKRQGVTNPERTFFAIKRLIGRTFEDPMTKKDIGLVPYKITKAPNGDAWVEADGKPYSPSQISAFILQKMKETAESYLGQPVSQAVITVPAYFNDAQRQA 153

[Close]

BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_METS4 (Chaperone protein dnaK OS=Methylobacterium sp. (strain 4-46) GN=dnaK PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.623e-50
Identity = 96/133 (72.18%), Postives = 111/133 (83.46%), Query Frame = 2

Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            G  PKVIEN+EG+RTTPS+VAF  +GE LVG PAKRQA TNP+ T F  KRLIGR +DDP TQ++  +V Y IVRA NGDAWVEA+G+Q+SPSQI AF L KMKETAESYLG+ V++AVITVPAYFNDAQRQA
Sbjct:   21 GTQPKVIENAEGARTTPSIVAFTDEGERLVGQPAKRQAVTNPSRTFFAIKRLIGRTYDDPMTQKDKGLVPYHIVRAGNGDAWVEADGKQFSPSQISAFTLQKMKETAESYLGQPVTQAVITVPAYFNDAQRQA 153

[Close]

BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: GRP75_RAT (Stress-70 protein, mitochondrial OS=Rattus norvegicus GN=Hspa9 PE=1 SV=3)

HSP 1 Score: 197.208 bits (500), Expect = 2.120e-50
Identity = 95/133 (71.43%), Postives = 111/133 (83.46%), Query Frame = 2

Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GK  KV+EN+EG+RTTPSVVAF   GE LVG PAKRQA TNP NT + TKRLIGR++DDP+ Q++ + V +KIVRA NGDAWVEA+G+ YSPSQIGAFVL KMKETAE+YLG +   AVITVPAYFND+QRQA
Sbjct:   72 GKQAKVLENAEGARTTPSVVAFTPDGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDTKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQA 204

[Close]

BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: GRP75_MOUSE (Stress-70 protein, mitochondrial OS=Mus musculus GN=Hspa9 PE=1 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 2.120e-50
Identity = 95/133 (71.43%), Postives = 111/133 (83.46%), Query Frame = 2

Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GK  KV+EN+EG+RTTPSVVAF   GE LVG PAKRQA TNP NT + TKRLIGR++DDP+ Q++ + V +KIVRA NGDAWVEA+G+ YSPSQIGAFVL KMKETAE+YLG +   AVITVPAYFND+QRQA
Sbjct:   72 GKQAKVLENAEGARTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDTKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQA 204

[Close]

BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: GRP75_CRIGR (Stress-70 protein, mitochondrial OS=Cricetulus griseus GN=HSPA9 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 2.120e-50
Identity = 95/133 (71.43%), Postives = 111/133 (83.46%), Query Frame = 2

Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GK  KV+EN+EG+RTTPSVVAF   GE LVG PAKRQA TNP NT + TKRLIGR++DDP+ Q++ + V +KIVRA NGDAWVEA+G+ YSPSQIGAFVL KMKETAE+YLG +   AVITVPAYFND+QRQA
Sbjct:   72 GKQAKVLENAEGARTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDTKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQA 204

[Close]

BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_XANP2 (Chaperone protein dnaK OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 2.120e-50
Identity = 94/133 (70.68%), Postives = 110/133 (82.71%), Query Frame = 2

Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            G  PKVIEN+EG+RTTPS+VAF + GE LVG PAKRQ+ TNP  T F  KRLIGR++DDP  +++  +V Y IVRA NGDAWVEA+G++YSPSQI AFVL KMKETAES+LG+ V KAVITVPAYFNDAQRQA
Sbjct:   21 GSTPKVIENAEGARTTPSIVAFTEDGERLVGQPAKRQSVTNPERTFFAVKRLIGRRYDDPTVEKDKHLVPYSIVRADNGDAWVEADGKKYSPSQISAFVLQKMKETAESFLGEKVEKAVITVPAYFNDAQRQA 153

The following BLAST results are available for this feature:

BLAST of FC869212 vs. ExPASy Swiss-Prot

BLAST of FC869212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
DNAK_SINMW	7.286e-51	73.68	Chaperone protein dnaK OS=Sinorhizobium medicae (s...	[more]
GRP75_PONAB	1.243e-50	71.43	Stress-70 protein, mitochondrial OS=Pongo abelii G...	[more]
GRP75_HUMAN	1.243e-50	71.43	Stress-70 protein, mitochondrial OS=Homo sapiens G...	[more]
GRP75_BOVIN	1.243e-50	71.43	Stress-70 protein, mitochondrial OS=Bos taurus GN=...	[more]
DNAK_BEII9	1.243e-50	71.43	Chaperone protein dnaK OS=Beijerinckia indica subs...	[more]
DNAK_METS4	1.623e-50	72.18	Chaperone protein dnaK OS=Methylobacterium sp. (st...	[more]
GRP75_RAT	2.120e-50	71.43	Stress-70 protein, mitochondrial OS=Rattus norvegi...	[more]
GRP75_MOUSE	2.120e-50	71.43	Stress-70 protein, mitochondrial OS=Mus musculus G...	[more]
GRP75_CRIGR	2.120e-50	71.43	Stress-70 protein, mitochondrial OS=Cricetulus gri...	[more]
DNAK_XANP2	2.120e-50	70.68	Chaperone protein dnaK OS=Xanthobacter autotrophic...	[more]

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Properties


Property Name	Value
Genbank description	C31009G02EF AbioticL1 Citrus clementina cDNA clone C31009G02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC869212 ID=FC869212; Name=FC869212; organism=Citrus clementina; type=EST; length=401bp
GGGAAAGAACCCCAAAGTTATTGAGAACTCCGAAGGATCTAGGACTACAC
CATCAGTTGTAGCTTTCAATCAGAAGGGAGAGCTACTTGTGGGTACACCA
GCAAAGCGTCAGGCTGCGACCAACCCGACTAACACGCTCTTTGGCACCAA
GCGTTTAATTGGTAGAAAATTTGATGATCCCCAGACGCAAAGAGAAATGC
AGATGGTTTCATATAAGATAGTAAGGGCCCCCAATGGGGATGCTTGGGTT
GAAGCCAATGGGCAGCAGTACTCGCCAAGTCAGATTGGGGCCTTTGTTCT
GACCAAGATGAAAGAAACTGCAGAATCCTACCTTGGAAAGTCAGTTTCAA
AAGCAGTAATCACAGTTCCAGCTTATTTCAACGATGCTCAAAGGCAAGCT
A