FC869212

Overview
NameFC869212
Unique NameFC869212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPS (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisB5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.795e-49
Identity = 91/133 (68.42%), Postives = 110/133 (82.71%), Query Frame = 2 
Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GKN KVIEN+EG RTTPS+VA +  GE LVG PAKRQA TNP  T F  KRL+GR++DDP  +++ ++V YKIV+A NGDAWVEA+GQ YSPSQ+ AF+L KMKETAE++LG+ V +AVITVPAYFNDAQRQA
Sbjct:   21 GKNSKVIENAEGMRTTPSIVAISDDGERLVGQPAKRQAVTNPERTFFAVKRLVGRRYDDPMVEKDKKLVPYKIVKASNGDAWVEADGQTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQA 153
[Close]
BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_MAGSA (Chaperone protein dnaK OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dnaK PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.061e-49
Identity = 93/133 (69.92%), Postives = 109/133 (81.95%), Query Frame = 2 
Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GKN KVIEN+EG RTTPS+ AF + GE LVG PAKRQA TNPT+TLF  KRLIGR+F+DP T+++M +V Y IV   NGDAWVEA   +YSPSQ+ AF+L KMKETAE YLG+ V++AVITVPAYFNDAQRQA
Sbjct:   21 GKNAKVIENAEGMRTTPSMTAFTESGERLVGQPAKRQAVTNPTSTLFAIKRLIGRRFEDPITKKDMNLVPYHIVAGDNGDAWVEARDAKYSPSQVSAFILQKMKETAEGYLGEKVTQAVITVPAYFNDAQRQA 153
[Close]
BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_METNO (Chaperone protein dnaK OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=dnaK PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 3.998e-49
Identity = 94/133 (70.68%), Postives = 108/133 (81.20%), Query Frame = 2 
Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            G  PKVIEN+EG+RTTPS+VAF   GE LVG PAKRQA TNP+ T F  KRLIGR +DDP TQ++  +V Y I RA NGDAWV A+G+Q+SPSQI AF L KMKETAESYLG+ V++AVITVPAYFNDAQRQA
Sbjct:   21 GTQPKVIENAEGARTTPSIVAFTDDGERLVGQPAKRQAVTNPSRTFFAIKRLIGRTYDDPMTQKDKGLVPYAITRAGNGDAWVAADGKQFSPSQISAFTLQKMKETAESYLGQPVTQAVITVPAYFNDAQRQA 153
[Close]
BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_RHOP5 (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisA53) GN=dnaK PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.222e-49
Identity = 91/133 (68.42%), Postives = 108/133 (81.20%), Query Frame = 2 
Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GK PKVIEN+EG RTTPS+VAF+  GE LVG PAKRQA TNP  T F  KRLIGR++DDP  +++ ++V YKIV+A NGDAWVEA+   YSPSQ+ AF+L KMKETAE++LG  V +AVITVPAYFNDAQRQA
Sbjct:   21 GKTPKVIENAEGMRTTPSIVAFSDDGERLVGQPAKRQAVTNPERTFFAVKRLIGRRYDDPMVEKDKKLVPYKIVKASNGDAWVEADANTYSPSQVSAFILQKMKETAEAHLGAKVDQAVITVPAYFNDAQRQA 153
[Close]
BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_CAUSK (Chaperone protein dnaK OS=Caulobacter sp. (strain K31) GN=dnaK PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.222e-49
Identity = 93/133 (69.92%), Postives = 109/133 (81.95%), Query Frame = 2 
Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GK PKVIEN+EG+RTTPSVVAF + GE LVG PAKRQA TNPTNTLF  KRLIGR F DP   ++  MV Y+IV+ P GDAWV+A+G+ YSP ++ AF+L KMKE AES+LG+ V+KAVITVPAYFNDAQRQA
Sbjct:   21 GKTPKVIENAEGARTTPSVVAFLEDGERLVGQPAKRQAVTNPTNTLFAIKRLIGRNFADPVVAKDKAMVPYEIVKGPTGDAWVKAHGKDYSPQEVSAFILQKMKEAAESHLGEPVTKAVITVPAYFNDAQRQA 153
[Close]
BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_RHOCS (Chaperone protein dnaK OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dnaK PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.820e-49
Identity = 92/133 (69.17%), Postives = 111/133 (83.46%), Query Frame = 2 
Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            G   KVIEN+EG+RTTPS+VAF Q GE LVG PAKRQA TNP NT F  KRLIGR++DDP TQ++  +V Y+IV   NGDAWVE++G+QYSPS+I AF+L KMKETAE+YLG+ V++AVITVPAYFND+QRQA
Sbjct:   21 GTQAKVIENAEGARTTPSMVAFTQGGERLVGQPAKRQAVTNPENTFFAIKRLIGRRYDDPLTQKDKGLVPYRIVGGKNGDAWVESHGKQYSPSEISAFILQKMKETAENYLGEKVTQAVITVPAYFNDSQRQA 153
[Close]
BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPB (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisB18) GN=dnaK PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 8.907e-49
Identity = 90/133 (67.67%), Postives = 109/133 (81.95%), Query Frame = 2 
Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GK PKVIEN+EG RTTPS+VAF+  GE LVG PAKRQA TNP  T F  KRL+GR++DDP  +++ ++V YKIV+A NGDAWVEA+ + YSPSQ+ AF+L KMKETAE++LG  V +AVITVPAYFNDAQRQA
Sbjct:   21 GKAPKVIENAEGMRTTPSIVAFSDDGERLVGQPAKRQAVTNPERTFFAVKRLVGRRYDDPMVEKDKKLVPYKIVKASNGDAWVEADAKTYSPSQVSAFILQKMKETAEAHLGAKVDQAVITVPAYFNDAQRQA 153
[Close]
BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_PELUB (Chaperone protein dnaK OS=Pelagibacter ubique GN=dnaK PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 8.907e-49
Identity = 90/133 (67.67%), Postives = 108/133 (81.20%), Query Frame = 2 
Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            G  PKV+EN+EG+RTTPSVVAF + GE LVG PAKRQA TNP NT+F  KRLIGR F+DP  ++++    +KIV +  GDAW+EA G++YSPSQI AF+L KMKETAE YLG+ V+KAVITVPAYFNDAQRQA
Sbjct:   21 GSQPKVLENAEGARTTPSVVAFTEDGEKLVGQPAKRQAVTNPENTIFAVKRLIGRSFEDPTVKKDIAAAPFKIVNSEKGDAWIEAKGEKYSPSQISAFILQKMKETAEKYLGQEVTKAVITVPAYFNDAQRQA 153
[Close]
BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_NITHX (Chaperone protein dnaK OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dnaK PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 8.907e-49
Identity = 91/133 (68.42%), Postives = 108/133 (81.20%), Query Frame = 2 
Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GK PKVIEN+EG RTTPS+VAF+  GE LVG PAKRQA TNP  T+F  KRLIGR++DDP  +++  +V YKI +A NGDAWVE +G+ YSPSQI AF L KMKETAE++LG+ V +AVITVPAYFNDAQRQA
Sbjct:   21 GKTPKVIENAEGMRTTPSIVAFSDDGERLVGQPAKRQAVTNPERTIFAVKRLIGRRYDDPTVEKDKHLVPYKIAKAGNGDAWVEVDGKTYSPSQISAFTLQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQA 153
[Close]
BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_METPB (Chaperone protein dnaK OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=dnaK PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 8.907e-49
Identity = 93/133 (69.92%), Postives = 108/133 (81.20%), Query Frame = 2 
Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            G  P+VIEN+EG+RTTPS+VAF   GE LVG PAKRQA TNP  T F  KRLIGR +DDP TQ++  +V YKI R  NGDAWVEA+G++YSPSQI AF L KMKETAES+LG+ V++AVITVPAYFNDAQRQA
Sbjct:   21 GTQPRVIENAEGARTTPSIVAFTDDGERLVGQPAKRQAVTNPERTFFAIKRLIGRTYDDPLTQKDKGLVPYKIARGDNGDAWVEADGKKYSPSQISAFTLQKMKETAESHLGQPVTQAVITVPAYFNDAQRQA 153
The following BLAST results are available for this feature:
BLAST of FC869212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RHOPS1.795e-4968.42Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_MAGSA3.061e-4969.92Chaperone protein dnaK OS=Magnetospirillum magneti... [more]
DNAK_METNO3.998e-4970.68Chaperone protein dnaK OS=Methylobacterium nodulan... [more]
DNAK_RHOP55.222e-4968.42Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_CAUSK5.222e-4969.92Chaperone protein dnaK OS=Caulobacter sp. (strain ... [more]
DNAK_RHOCS6.820e-4969.17Chaperone protein dnaK OS=Rhodospirillum centenum ... [more]
DNAK_RHOPB8.907e-4967.67Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_PELUB8.907e-4967.67Chaperone protein dnaK OS=Pelagibacter ubique GN=d... [more]
DNAK_NITHX8.907e-4968.42Chaperone protein dnaK OS=Nitrobacter hamburgensis... [more]
DNAK_METPB8.907e-4969.92Chaperone protein dnaK OS=Methylobacterium populi ... [more]

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Properties
Property NameValue
Genbank descriptionC31009G02EF AbioticL1 Citrus clementina cDNA clone C31009G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869212 ID=FC869212; Name=FC869212; organism=Citrus clementina; type=EST; length=401bp
GGGAAAGAACCCCAAAGTTATTGAGAACTCCGAAGGATCTAGGACTACAC
CATCAGTTGTAGCTTTCAATCAGAAGGGAGAGCTACTTGTGGGTACACCA
GCAAAGCGTCAGGCTGCGACCAACCCGACTAACACGCTCTTTGGCACCAA
GCGTTTAATTGGTAGAAAATTTGATGATCCCCAGACGCAAAGAGAAATGC
AGATGGTTTCATATAAGATAGTAAGGGCCCCCAATGGGGATGCTTGGGTT
GAAGCCAATGGGCAGCAGTACTCGCCAAGTCAGATTGGGGCCTTTGTTCT
GACCAAGATGAAAGAAACTGCAGAATCCTACCTTGGAAAGTCAGTTTCAA
AAGCAGTAATCACAGTTCCAGCTTATTTCAACGATGCTCAAAGGCAAGCT
A
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