FC869212

Overview
NameFC869212
Unique NameFC869212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_METEP (Chaperone protein dnaK OS=Methylobacterium extorquens (strain PA1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 8.907e-49
Identity = 93/133 (69.92%), Postives = 108/133 (81.20%), Query Frame = 2 
Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            G  P+VIEN+EG+RTTPS+VAF   GE LVG PAKRQA TNP  T F  KRLIGR +DDP TQ++  +V YKI R  NGDAWVEA+G++YSPSQI AF L KMKETAES+LG+ V++AVITVPAYFNDAQRQA
Sbjct:   21 GTQPRVIENAEGARTTPSIVAFTDDGERLVGQPAKRQAVTNPERTFFAIKRLIGRTYDDPLTQKDKGLVPYKIARGDNGDAWVEADGKKYSPSQISAFTLQKMKETAESHLGQPVTQAVITVPAYFNDAQRQA 153
[Close]
BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_METC4 (Chaperone protein dnaK OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=dnaK PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 8.907e-49
Identity = 93/133 (69.92%), Postives = 108/133 (81.20%), Query Frame = 2 
Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            G  P+VIEN+EG+RTTPS+VAF   GE LVG PAKRQA TNP  T F  KRLIGR +DDP TQ++  +V YKI R  NGDAWVEA+G++YSPSQI AF L KMKETAES+LG+ V++AVITVPAYFNDAQRQA
Sbjct:   21 GTQPRVIENAEGARTTPSIVAFTDDGERLVGQPAKRQAVTNPERTFFAIKRLIGRTYDDPLTQKDKGLVPYKIARGDNGDAWVEADGKKYSPSQISAFTLQKMKETAESHLGQPVTQAVITVPAYFNDAQRQA 153
[Close]
BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_AGRVS (Chaperone protein dnaK OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dnaK PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.163e-48
Identity = 91/133 (68.42%), Postives = 110/133 (82.71%), Query Frame = 2 
Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GK+ KVIENSEG+RTTPS+VAF+  GE LVG PAKRQA TNPTNTLF  KRLIGR+++DP  +++  +V + I++  NGDAWVEA G+ YSP+QI A +L KMKETAE+YLG+ V KAVITVPAYFNDAQRQA
Sbjct:   21 GKDAKVIENSEGARTTPSMVAFSDDGERLVGQPAKRQAVTNPTNTLFAVKRLIGRRYEDPTVEKDKGLVPFPIIKGDNGDAWVEAQGKGYSPAQISAMILQKMKETAEAYLGEKVEKAVITVPAYFNDAQRQA 153
[Close]
BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_AGRT5 (Chaperone protein dnaK OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dnaK PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 1.984e-48
Identity = 91/133 (68.42%), Postives = 110/133 (82.71%), Query Frame = 2 
Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GK+ KVIEN+EG+RTTPS+VAF+  GE LVG PAKRQA TNPTNTLF  KRLIGR+++DP  +++  +V ++IV+  NGDAWV+A  + YSPSQI A +L KMKETAESYLG+ V KAVITVPAYFNDAQRQA
Sbjct:   21 GKDTKVIENAEGARTTPSMVAFSDDGERLVGQPAKRQAVTNPTNTLFAVKRLIGRRYEDPTVEKDKALVPFEIVKGDNGDAWVKAQDKNYSPSQISAMILQKMKETAESYLGEKVEKAVITVPAYFNDAQRQA 153
[Close]
BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_BRUSU (Chaperone protein dnaK OS=Brucella suis GN=dnaK PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 2.591e-48
Identity = 90/133 (67.67%), Postives = 108/133 (81.20%), Query Frame = 2 
Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GKN KVIEN+EG+RTTPS++AF    E L G PAKRQA TNP  TLF  KRLIGR++DDP   ++  +V YKIV+  NGDAWVE +G++YSPSQI A +L KMKETAESYLG++V++AVITVPAYFNDAQRQA
Sbjct:   21 GKNAKVIENAEGARTTPSIIAFTDGDERLAGQPAKRQAVTNPEGTLFAVKRLIGRRYDDPMVTKDKDLVPYKIVKGDNGDAWVEVHGKKYSPSQISAMILQKMKETAESYLGETVTQAVITVPAYFNDAQRQA 153
[Close]
BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_BRUO2 (Chaperone protein dnaK OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=dnaK PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 2.591e-48
Identity = 90/133 (67.67%), Postives = 108/133 (81.20%), Query Frame = 2 
Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GKN KVIEN+EG+RTTPS++AF    E L G PAKRQA TNP  TLF  KRLIGR++DDP   ++  +V YKIV+  NGDAWVE +G++YSPSQI A +L KMKETAESYLG++V++AVITVPAYFNDAQRQA
Sbjct:   21 GKNAKVIENAEGARTTPSIIAFTDGDERLAGQPAKRQAVTNPEGTLFAVKRLIGRRYDDPMVTKDKDLVPYKIVKGDNGDAWVEVHGKKYSPSQISAMILQKMKETAESYLGETVTQAVITVPAYFNDAQRQA 153
[Close]
BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_BRUME (Chaperone protein dnaK OS=Brucella melitensis GN=dnaK PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 2.591e-48
Identity = 90/133 (67.67%), Postives = 108/133 (81.20%), Query Frame = 2 
Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GKN KVIEN+EG+RTTPS++AF    E L G PAKRQA TNP  TLF  KRLIGR++DDP   ++  +V YKIV+  NGDAWVE +G++YSPSQI A +L KMKETAESYLG++V++AVITVPAYFNDAQRQA
Sbjct:   21 GKNAKVIENAEGARTTPSIIAFTDGDERLAGQPAKRQAVTNPEGTLFAVKRLIGRRYDDPMVTKDKDLVPYKIVKGDNGDAWVEVHGKKYSPSQISAMILQKMKETAESYLGETVTQAVITVPAYFNDAQRQA 153
[Close]
BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_BRUAB (Chaperone protein dnaK OS=Brucella abortus GN=dnaK PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 2.591e-48
Identity = 90/133 (67.67%), Postives = 108/133 (81.20%), Query Frame = 2 
Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GKN KVIEN+EG+RTTPS++AF    E L G PAKRQA TNP  TLF  KRLIGR++DDP   ++  +V YKIV+  NGDAWVE +G++YSPSQI A +L KMKETAESYLG++V++AVITVPAYFNDAQRQA
Sbjct:   21 GKNAKVIENAEGARTTPSIIAFTDGDERLAGQPAKRQAVTNPEGTLFAVKRLIGRRYDDPMVTKDKDLVPYKIVKGDNGDAWVEVHGKKYSPSQISAMILQKMKETAESYLGETVTQAVITVPAYFNDAQRQA 153
[Close]
BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: HSP7E_YEAST (Heat shock protein SSC3, mitochondrial OS=Saccharomyces cerevisiae GN=ECM10 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.384e-48
Identity = 91/133 (68.42%), Postives = 108/133 (81.20%), Query Frame = 2 
Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GK P++IEN+EGSRTTPSVVAF + GE LVG PAKRQ+  N  NTLF TKRLIGR+F+D + QR++  V +KIV+  NGDAWVEA  + YSP+QIG F+L KMKETAE+YL KSV  AV+TVPAYFNDAQRQA
Sbjct:   46 GKVPRIIENAEGSRTTPSVVAFTKDGERLVGEPAKRQSVINSENTLFATKRLIGRRFEDAEVQRDINQVPFKIVKHSNGDAWVEARNRTYSPAQIGGFILNKMKETAEAYLAKSVKNAVVTVPAYFNDAQRQA 178
[Close]
BLAST of FC869212 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS7 (Chaperone protein dnaK OS=Rhodopseudomonas sp. (strain No.7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 4.420e-48
Identity = 90/133 (67.67%), Postives = 108/133 (81.20%), Query Frame = 2 
Query:    2 GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAATNPTNTLFGTKRLIGRKFDDPQTQREMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 400
            GK+ KVIEN+EG RTTPS+VA    GE LVG PAKRQA TNP  T F  KRLIGR++DDP  +++  +V YKIV+A NGDAWVEA+G+ YSPSQ+ AF+L KMKETAE++LG+ V +AVITVPAYFNDAQRQA
Sbjct:   21 GKSAKVIENAEGMRTTPSIVAITDDGERLVGQPAKRQAVTNPERTFFAVKRLIGRRYDDPMVEKDKGLVPYKIVKASNGDAWVEADGKTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQA 153
The following BLAST results are available for this feature:
BLAST of FC869212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_METEP8.907e-4969.92Chaperone protein dnaK OS=Methylobacterium extorqu... [more]
DNAK_METC48.907e-4969.92Chaperone protein dnaK OS=Methylobacterium chlorom... [more]
DNAK_AGRVS1.163e-4868.42Chaperone protein dnaK OS=Agrobacterium vitis (str... [more]
DNAK_AGRT51.984e-4868.42Chaperone protein dnaK OS=Agrobacterium tumefacien... [more]
DNAK_BRUSU2.591e-4867.67Chaperone protein dnaK OS=Brucella suis GN=dnaK PE... [more]
DNAK_BRUO22.591e-4867.67Chaperone protein dnaK OS=Brucella ovis (strain AT... [more]
DNAK_BRUME2.591e-4867.67Chaperone protein dnaK OS=Brucella melitensis GN=d... [more]
DNAK_BRUAB2.591e-4867.67Chaperone protein dnaK OS=Brucella abortus GN=dnaK... [more]
HSP7E_YEAST3.384e-4868.42Heat shock protein SSC3, mitochondrial OS=Saccharo... [more]
DNAK_RHOS74.420e-4867.67Chaperone protein dnaK OS=Rhodopseudomonas sp. (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31009G02EF AbioticL1 Citrus clementina cDNA clone C31009G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869212 ID=FC869212; Name=FC869212; organism=Citrus clementina; type=EST; length=401bp
GGGAAAGAACCCCAAAGTTATTGAGAACTCCGAAGGATCTAGGACTACAC
CATCAGTTGTAGCTTTCAATCAGAAGGGAGAGCTACTTGTGGGTACACCA
GCAAAGCGTCAGGCTGCGACCAACCCGACTAACACGCTCTTTGGCACCAA
GCGTTTAATTGGTAGAAAATTTGATGATCCCCAGACGCAAAGAGAAATGC
AGATGGTTTCATATAAGATAGTAAGGGCCCCCAATGGGGATGCTTGGGTT
GAAGCCAATGGGCAGCAGTACTCGCCAAGTCAGATTGGGGCCTTTGTTCT
GACCAAGATGAAAGAAACTGCAGAATCCTACCTTGGAAAGTCAGTTTCAA
AAGCAGTAATCACAGTTCCAGCTTATTTCAACGATGCTCAAAGGCAAGCT
A
back to top