FC869221

Overview
NameFC869221
Unique NameFC869221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RL10_PROM1 (50S ribosomal protein L10 OS=Prochlorococcus marinus (strain NATL1A) GN=rplJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 41/129 (31.78%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  298 LENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEG-TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGAL 678
            L+N  +   + YKG + K+  DLR  L ++  +  V KNTL+ +AI+G   W  L   ++G NA++ +  + + +A+K  + FQKE +  E    G +FEGK  +  + KA+  +P++  +  +  GAL
Sbjct:   19 LDNSEMALVLDYKGLSTKEMSDLRSRLQQSDGVCKVTKNTLMRQAIKGKNSWTGLDSLLTGTNAFVLIKGD-VGSAVKAVQAFQKETQKSETK--GGLFEGKLLSQDEIKAIAKLPSKEALMGQIAGAL 144          
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RL10_GLOVI (50S ribosomal protein L10 OS=Gloeobacter violaceus GN=rplJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 42/129 (32.56%), Postives = 70/129 (54.26%), Query Frame = 1
Query:  298 LENCHLIAAIKYKGFTVKQFQDLRRSLPENT-KLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGALQ 681
            LE   ++  I Y+G +V +   LRR + E+    +VAKNTL+  A   T W  + P ++G +A+LF   E++   +K Y +F +E K  + +F GAV +G        KA+  +P +  + A+  GAL+
Sbjct:   18 LEKSSVVMVIDYRGLSVAEITGLRRRMREHGGTCVVAKNTLMGVATRETAWRNIDPLLAGPSAFLF-GNEKLKEMLKTYEDFARETK--KTEFRGAVVDGTLVTLDGLKAIADLPPKEVLLAQFAGALK 143          
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RL10_SYNS3 (50S ribosomal protein L10 OS=Synechococcus sp. (strain CC9311) GN=rplJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 40/129 (31.01%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  298 LENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEGTQ-WEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGAL 678
            L    +   + Y+G ++K+  DLR  L  +  +  V KNTL+ +AI+G   W +L   ++G NA++ +  + +  A+K  ++FQKE K  E    G +FEGK  +  + KA+  +P++  + A+  GA+
Sbjct:   19 LGEAEMALVLDYQGLSIKEMSDLRTRLQASNGVCKVTKNTLMRRAIDGDSVWSSLDSLLNGTNAFVLIKGD-VGGAVKAVQSFQKETKKSETK--GGLFEGKLLSQDEIKAIGELPSKEVLMAQIAGAI 144          
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RL10_CYAP4 (50S ribosomal protein L10 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  298 LENCHLIAAIKYKGFTVKQFQDLRRSL-PENTKLIVAKNTLVYKAIEGTQ-WEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGALQGPA 690
            L    L   I YKG TV +  DLR+ L P  T   V KN  +  A++G Q W+ L+      +A+L V  +++  AIK Y++FQK  K  + +  G V EG+       KA+  +P++ ++ A+  GA+ G A
Sbjct:   19 LSQSQLTLVIDYKGLTVAEITDLRKRLRPTGTLCKVTKNAFMRIAVDGNQTWQPLQSFCQETSAFLLVK-DDLGGAIKAYQDFQKATK--KTELRGGVMEGRSLNADQVKAIGDLPSKDQLMAQIAGAINGVA 148          
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RL10_PROMM (50S ribosomal protein L10 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 42/133 (31.58%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  298 LENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEGT-QWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGALQGPA 690
            L    +   + Y+G ++K+  DLR  L  +  +  V KNTL+  AI G   W  L+  ++G NA++ +  + +  A+K  + FQK+ K  E    G +FEGK  + G+ KA+  +PT+  + A+  G+L   A
Sbjct:   19 LGEAEMALVLDYQGLSIKEMSDLRTRLQASNGVCKVTKNTLMRHAINGNGAWSNLESLLTGTNAFVLIKGD-VGGAVKAVQAFQKDTKKSETK--GGLFEGKLLSQGEIKAIGDLPTKEVLMAQIAGSLNALA 148          
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RL10_PROM3 (50S ribosomal protein L10 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 42/133 (31.58%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  298 LENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEGT-QWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGALQGPA 690
            L    +   + Y+G ++K+  DLR  L  +  +  V KNTL+  AI G   W  L+  ++G NA++ +  + +  A+K  + FQK+ K  E    G +FEGK  + G+ KA+  +PT+  + A+  G+L   A
Sbjct:   19 LGEAEMALVLDYQGLSIKEMSDLRTRLQASNGVCKVTKNTLMRHAINGNGAWSNLESLLTGTNAFVLIKGD-VGGAVKAVQAFQKDTKKSETK--GGLFEGKLLSQGEIKAIGDLPTKEVLMAQIAGSLNALA 148          
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RL10_MICAN (50S ribosomal protein L10 OS=Microcystis aeruginosa (strain NIES-843) GN=rplJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 48/137 (35.04%), Postives = 72/137 (52.55%), Query Frame = 1
Query:  298 LENCHLIAAIKYKGFTVKQFQDLRRSL-PENTKLIVAKNTLVYKAI-EGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVF----EGKFYAPGDFKALESMPTRAEIYAKXLGALQGPA 690
            L    L   I Y+G TV +  +LRR L P  T   V KNTL+  AI E + WE +K  +SG +A+L V  E+I  A K Y+ F+KE K  + +  G V     +G+       KA+  +P++ ++ A+  GA+   A
Sbjct:   19 LSEAQLTMVIDYQGLTVAEISNLRRKLRPTGTICKVTKNTLMGLAIAEDSGWEPMKSLLSGTSAFLLV-KEDIGGAFKAYQEFKKESK--KTELRGGVLKEGTKGQLLTEEQLKAIADLPSKEQLIAQVAGAINAIA 152          
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RL10_SYNP6 (50S ribosomal protein L10 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 41/133 (30.83%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  298 LENCHLIAAIKYKGFTVKQFQDLRRSLP-ENTKLIVAKNTLVYKAI-EGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGALQGPA 690
            ++   +   + Y+G TV +  DLR  L   N+   V KNTL+ +AI +   W+ L   + G NA++ V  ++  +AIK Y+ FQK+ K  + +  G + EG+  +  + KA+  +P++  + A+  GA+ G A
Sbjct:   19 VDEAQMAFVVDYQGLTVAEITDLRNRLEASNSVCKVTKNTLMRRAIADADDWQPLTELLKGTNAFVLVK-DDPGSAIKAYQAFQKDTK--KTELRGGLLEGRLLSSDELKAIGDLPSKEVLIAQIAGAINGVA 148          
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RL10_SYNE7 (50S ribosomal protein L10 OS=Synechococcus elongatus (strain PCC 7942) GN=rplJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 41/133 (30.83%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  298 LENCHLIAAIKYKGFTVKQFQDLRRSLP-ENTKLIVAKNTLVYKAI-EGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGALQGPA 690
            ++   +   + Y+G TV +  DLR  L   N+   V KNTL+ +AI +   W+ L   + G NA++ V  ++  +AIK Y+ FQK+ K  + +  G + EG+  +  + KA+  +P++  + A+  GA+ G A
Sbjct:   19 VDEAQMAFVVDYQGLTVAEITDLRNRLEASNSVCKVTKNTLMRRAIADADDWQPLTELLKGTNAFVLVK-DDPGSAIKAYQAFQKDTK--KTELRGGLLEGRLLSSDELKAIGDLPSKEVLIAQIAGAINGVA 148          
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RL10_SYNY3 (50S ribosomal protein L10 OS=Synechocystis sp. (strain PCC 6803) GN=rplJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 41/132 (31.06%), Postives = 70/132 (53.03%), Query Frame = 1
Query:  301 ENCHLIAAIKYKGFTVKQFQDLRRSL-PENTKLIVAKNTLVYKAIEGTQ-WEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGALQGPA 690
            ++  +   I Y+G TV +  DLR  L P      +AKNTLV +A+ G + W  ++  ++G  A + V  E++  AIK Y+ FQK+ K  + +  G V EGK     D +A+  +P++ ++  +  G +   A
Sbjct:   20 QDAQMTVIIDYQGLTVAEITDLRNRLRPLGGTCKIAKNTLVRRALAGQEAWSPMEEFLTGTTA-ILVLKEDLGGAIKAYKKFQKDTK--KTELRGGVLEGKSLTQADVEAIGDLPSKEQLMGQIAGGINALA 148          
The following BLAST results are available for this feature:
BLAST of FC869221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RL10_PROM14.404e-1231.7850S ribosomal protein L10 OS=Prochlorococcus marin... [more]
RL10_GLOVI7.512e-1232.5650S ribosomal protein L10 OS=Gloeobacter violaceus... [more]
RL10_SYNS39.811e-1231.0150S ribosomal protein L10 OS=Synechococcus sp. (st... [more]
RL10_CYAP49.811e-1233.8350S ribosomal protein L10 OS=Cyanothece sp. (strai... [more]
RL10_PROMM1.281e-1131.5850S ribosomal protein L10 OS=Prochlorococcus marin... [more]
RL10_PROM31.281e-1131.5850S ribosomal protein L10 OS=Prochlorococcus marin... [more]
RL10_MICAN1.281e-1135.0450S ribosomal protein L10 OS=Microcystis aeruginos... [more]
RL10_SYNP61.674e-1130.8350S ribosomal protein L10 OS=Synechococcus sp. (st... [more]
RL10_SYNE71.674e-1130.8350S ribosomal protein L10 OS=Synechococcus elongat... [more]
RL10_SYNY32.186e-1131.0650S ribosomal protein L10 OS=Synechocystis sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionC31009G12EF AbioticL1 Citrus clementina cDNA clone C31009G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869221 ID=FC869221; Name=FC869221; organism=Citrus clementina; type=EST; length=693bp
GAGAACTGATATACGCATCATAATGATAAGATAAGCCCTCCAAGAAACAG
GACAGCTGAGCCTCTGGTCTGCTGATCTGCACTTATCCTTCTCCCGCAGC
CTCTATTTTTTTTCAATTCCACCATGGAAGTTTCTCTCCTTTCTTTATCT
TCCTCTCAAAACCTAACCCTAAAACCAAGCACTAACCCACTTTTCCATTT
CCACCCTTCAAAACGCAGCAAACCACCACCAACCCACATCAGGGCCGCCA
TTTCCAGGACCAAGAAAGAAGAAACAGTTGACACTGTCAAAACCCATCTC
GAAAATTGCCATTTAATTGCTGCTATCAAGTACAAAGGCTTCACTGTTAA
GCAATTTCAAGATTTGAGACGGTCATTGCCAGAAAACACTAAGCTTATTG
TGGCTAAAAACACTCTTGTCTATAAAGCCATTGAAGGGACCCAATGGGAA
GCTCTGAAGCCTTGCATGAGTGGAATGAATGCTTGGCTTTTCGTTCACAC
TGAGGAGATTCCTGCGGCTATTAAGCCGTACAGGAACTTTCAGAAAGAGA
AGAAATTGGAAGAAAATGATTTTGCTGGGGCGGTTTTTGAAGGCAAGTTT
TATGCGCCTGGTGATTTTAAAGCTTTGGAGAGTATGCCCACGAGAGCTGA
GATTTATGCTAAGNTGTTGGGGGCATTGCAGGGGCCGGCTATT
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