FC869221

Overview
NameFC869221
Unique NameFC869221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RL10_SYNPW (50S ribosomal protein L10 OS=Synechococcus sp. (strain WH7803) GN=rplJ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 42/133 (31.58%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  298 LENCHLIAAIKYKGFTVKQFQDLRRSLPE-NTKLIVAKNTLVYKAIEG-TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGALQGPA 690
            L    +   + Y+G ++K+  DLR  L   N    V KNTL+ +AI+G + W  L   ++G NA++ V  + +  A+K  + FQK+ K  E    G +FEGK  +  + KA+  +P++  + A+  GA+   A
Sbjct:   19 LGEAEMALVLDYQGLSIKEMSDLRTRLQAANGVCKVTKNTLMRRAIDGDSAWSNLDSLLTGTNAFVLVKGD-VGGAVKAVQAFQKDTKKSETK--GGLFEGKLLSQDEIKAIGDLPSKEALMAQIAGAINAVA 148          
BLAST of FC869221 vs. ExPASy Swiss-Prot
Match: RL10_ACAM1 (50S ribosomal protein L10 OS=Acaryochloris marina (strain MBIC 11017) GN=rplJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 41/130 (31.54%), Postives = 73/130 (56.15%), Query Frame = 1
Query:  295 HLENCHLIAAIKYKGFTVKQFQDLRRSL-PENTKLIVAKNTLVYKAIEGTQ-WEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKXLGAL 678
            +L +  +   I Y+G TV +  +LR  L P   +  + KNTL+ +AI+G + WE L   +S  +A+L +  +++  AIK Y+ FQK  K  + +  G V +G+  +  D KA+  +P++  + A+  GA+
Sbjct:   18 NLSDTVMTIVIDYQGLTVAEITELRNKLRPAGAQCKITKNTLMRRAIKGDEKWEPLSDWLSDSSAFLLIK-DDLGGAIKAYQAFQKATK--KTELRGGVMDGQPLSKEDIKAIGDLPSQEVLVAQIAGAI 144          
The following BLAST results are available for this feature:
BLAST of FC869221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RL10_SYNPW3.728e-1131.5850S ribosomal protein L10 OS=Synechococcus sp. (st... [more]
RL10_ACAM18.306e-1131.5450S ribosomal protein L10 OS=Acaryochloris marina ... [more]

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Properties
Property NameValue
Genbank descriptionC31009G12EF AbioticL1 Citrus clementina cDNA clone C31009G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869221 ID=FC869221; Name=FC869221; organism=Citrus clementina; type=EST; length=693bp
GAGAACTGATATACGCATCATAATGATAAGATAAGCCCTCCAAGAAACAG
GACAGCTGAGCCTCTGGTCTGCTGATCTGCACTTATCCTTCTCCCGCAGC
CTCTATTTTTTTTCAATTCCACCATGGAAGTTTCTCTCCTTTCTTTATCT
TCCTCTCAAAACCTAACCCTAAAACCAAGCACTAACCCACTTTTCCATTT
CCACCCTTCAAAACGCAGCAAACCACCACCAACCCACATCAGGGCCGCCA
TTTCCAGGACCAAGAAAGAAGAAACAGTTGACACTGTCAAAACCCATCTC
GAAAATTGCCATTTAATTGCTGCTATCAAGTACAAAGGCTTCACTGTTAA
GCAATTTCAAGATTTGAGACGGTCATTGCCAGAAAACACTAAGCTTATTG
TGGCTAAAAACACTCTTGTCTATAAAGCCATTGAAGGGACCCAATGGGAA
GCTCTGAAGCCTTGCATGAGTGGAATGAATGCTTGGCTTTTCGTTCACAC
TGAGGAGATTCCTGCGGCTATTAAGCCGTACAGGAACTTTCAGAAAGAGA
AGAAATTGGAAGAAAATGATTTTGCTGGGGCGGTTTTTGAAGGCAAGTTT
TATGCGCCTGGTGATTTTAAAGCTTTGGAGAGTATGCCCACGAGAGCTGA
GATTTATGCTAAGNTGTTGGGGGCATTGCAGGGGCCGGCTATT
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