FC869224

Overview
NameFC869224
Unique NameFC869224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: YJMD_BACSU (Uncharacterized zinc-type alcohol dehydrogenase-like protein yjmD OS=Bacillus subtilis GN=yjmD PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 35/108 (32.41%), Postives = 52/108 (48.15%), Query Frame = 2
Query:   65 VAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSV 388
            V  E  KP++ +D EV         +K+K   +C +D++ +         PR+ GHE  G VE++G  V  L+ GDHV+      CG C  CR    N+C  L +  V
Sbjct:   13 VTAEVKKPVLSKDDEVL--------VKVKRVGICGSDMHIYHGTNPLATLPRVIGHEVTGQVEAVGANVQSLKPGDHVVIEPISYCGSCYACRKGRPNVCAKLSVFGV 112          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: TDH_XANAC (L-threonine 3-dehydrogenase OS=Xanthomonas axonopodis pv. citri GN=tdh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 39/106 (36.79%), Postives = 55/106 (51.89%), Query Frame = 2
Query:   56 KAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDL--YFWESKGQTPLFPRI-FGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMC 364
            KA V  EA K + ++ V V  P   EV IK++ T++C TDL  Y W+   Q  + P +  GHE  G V  LG  V+  ++G  V       CG CR+CR    ++C
Sbjct:    2 KALVKREANKGIWLEQVPVPTPGPNEVLIKLEKTAICGTDLHIYLWDEWSQRTIEPGLTIGHEFVGRVAELGSAVTGYQIGQRVSAEGHIVCGHCRNCRGGRPHLC 107          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: DOIAD_STRRY (2-deoxy-scyllo-inosamine dehydrogenase OS=Streptomyces rimosus subsp. paromomycinus GN=parE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 56/191 (29.32%), Postives = 88/191 (46.07%), Query Frame = 2
Query:   62 AVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMC-DLLRINSVRGVMLADGQS--RFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAV 625
            A+ ++A    ++ + +V  P   E  +K+ Y S+C +DL F++       +P + GHE +G V   G G +DL VG +V+   T  CG CRHC      +C DL  +   R    A+  +    +++  P    L  +T  E   V    V ++   A  +KV I   G   G+G  L  A   RG+ V V
Sbjct:    3 ALMFKAPLQAVLTERDVPEPAPGEALVKLAYNSICGSDLSFYKGVWHGFTYPVVPGHEWSGTVVEAGGGAADL-VGQNVVGDLTVACGSCRHCTVGKPTLCADLQELGFTRDGACAEYMTVPTGNLHRLPEGLSLREATQVEPLAVALNAVDRLAVTAG-EKVAITGAG---GIGLLLAQAVRLRGAEVTV 188          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 50/171 (29.24%), Postives = 70/171 (40.94%), Query Frame = 2
Query:   56 KAAVAWEAGKP---LIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINSVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSC 556
            KAAV W A      L   +      K  +V IK+ Y  +C TDL+  ++     ++P + GHE  GVV  +G GV+  + GD V +  F G C  C  C     N C  + I S               NG+          FS+  VV+   V ++    PLD    L C
Sbjct:   81 KAAVGWAARDDSGVLSPYNFSRRAQKDDDVTIKVLYCGICHTDLHVVKNDWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGFFVGSCRTCDSCGKGYENYCPTMVITS---------------NGKDYGGAATQGGFSDAIVVNEHYVLRVPAGLPLDGAAPLLC 236          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: TDH_PYRKO (Probable L-threonine 3-dehydrogenase OS=Pyrococcus kodakaraensis GN=tdh PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = 2
Query:  101 DVEVAPPKTMEVRIKIKYTSLCRTDL--YFWESKGQTPLFP-RIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSV 388
            +V+V  P   EV IK+  TS+C TDL  Y W    Q+ + P +I GHE AG V  +G GV DL+VGD++       CG C  C+ +  ++C   +I  V
Sbjct:   21 EVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGVEDLQVGDYISVETHIVCGKCYACKHNRYHVCQNTKIFGV 119          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: TDH_PYRFU (Probable L-threonine 3-dehydrogenase OS=Pyrococcus furiosus GN=tdh PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 44/108 (40.74%), Postives = 57/108 (52.78%), Query Frame = 2
Query:   74 EAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDL--YFWESKGQTPLFP-RIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSV 388
            E G  L+  +V+V  P   EV IKI  TS+C TDL  Y W    QT + P +I GHE AG V  +G GV  +EVGD+V       CG C  C+    ++C   +I  V
Sbjct:   14 EYGAELV--EVDVPKPGPGEVLIKILATSICGTDLHIYEWNEWAQTRIRPPQIMGHEVAGEVVEVGPGVEGIEVGDYVSVETHIVCGKCYACKRGQYHVCQNTKIFGV 119          
The following BLAST results are available for this feature:
BLAST of FC869224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
YJMD_BACSU6.927e-1132.41Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
TDH_XANAC6.927e-1136.79L-threonine 3-dehydrogenase OS=Xanthomonas axonopo... [more]
DOIAD_STRRY6.927e-1129.322-deoxy-scyllo-inosamine dehydrogenase OS=Streptom... [more]
CAD8B_ORYSJ6.927e-1129.24Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]
TDH_PYRKO9.047e-1139.39Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
TDH_PYRFU9.047e-1140.74Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]

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Properties
Property NameValue
Genbank descriptionC31009H03EF AbioticL1 Citrus clementina cDNA clone C31009H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869224 ID=FC869224; Name=FC869224; organism=Citrus clementina; type=EST; length=633bp
ATTCTCATTGGGAACCTCACCAATGTCGAGCACTGCTGGTCTTATTCTTA
CCTGCAAAGCGGCGGTTGCTTGGGAAGCAGGGAAGCCGCTGATCATTCAG
GATGTGGAGGTTGCTCCTCCAAAGACCATGGAAGTGAGGATCAAGATCAA
ATACACCTCTCTTTGCCGCACTGATCTCTATTTCTGGGAGTCCAAGGGTC
AGACACCCTTGTTTCCTCGCATATTTGGGCATGAAGCAGCAGGGGTTGTG
GAAAGTCTTGGGGAAGGTGTTTCAGACCTTGAAGTAGGGGATCATGTACT
CCCGGTATTTACAGGGGAGTGTGGGGATTGTAGACACTGCAGGTCCGATG
TAAGCAATATGTGTGACCTTTTGAGAATAAACTCAGTCAGGGGAGTCATG
CTTGCTGATGGACAATCTAGGTTTTCGATCAATGGGGAGCCTGTAAATCA
CTTCCTTGGAACATCCACCTTTAGCGAGTACACTGTCGTTCATTCAGGCT
GCGTTGCAAAGATCAATCCTCTGGCACCTTTGGATAAAGTCTGCATTCTC
AGTTGTGGCGTCTCAACAGGGCTAGGTGCAACTCTAAATGTGGCAAAACC
TGAAAGGGGTTCGTCAGTCGCTGTCTTTGGCCT
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