FC869224

Overview
NameFC869224
Unique NameFC869224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9483 contig Ccv1_Contig9483:1..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: ADH1A_PONAB (Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A PE=2 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 5.601e-53
Identity = 105/201 (52.24%), Postives = 138/201 (68.66%), Query Frame = 2
Query:   29 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 631
            STAG ++ CKAAV WE  KP  I++VEVAPPK  EVRIK+    +C TD +       TPL P I GHEAAG+VES+GEGV+ ++ GD V+P+   +CG CR C++  SN C    +++ +G  L DG SRF+  G+P++HFLG STFS+YTVV    VAKI+  +PL KVC++ CG STG G+ +NVAK   GS+ AVFG
Sbjct:    2 STAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAQEVRIKMVAVGICGTDDHVVSGTMVTPL-PAILGHEAAGIVESVGEGVTTVKPGDKVIPLAVPQCGKCRICKNPESNYCLKNDVSNPQGT-LQDGTSRFTCRGKPIHHFLGISTFSQYTVVDENAVAKIDAASPLAKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFG 200          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: ADH1A_MACMU (Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1A PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 5.601e-53
Identity = 105/201 (52.24%), Postives = 137/201 (68.16%), Query Frame = 2
Query:   29 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 631
            STAG ++ CKAAV WE  KP  I+DVEVAPPK  EVRIK+    +C TD +       TPL P I GHEAAG+VES+GEGV+ +E GD V+P+   +CG CR C++   N C    +++ RG  L DG SRF+  G+P++HFLG STFS+YTVV    VAKI+  +P++KVC++ CG STG G+ + VAK   GS+ AVFG
Sbjct:    2 STAGKVIKCKAAVLWEVMKPFSIEDVEVAPPKAYEVRIKMVTVGICGTDDHVVSGTMVTPL-PVILGHEAAGIVESVGEGVTTVEPGDKVIPLALPQCGKCRICKTPERNYCLKNDVSNPRGT-LQDGTSRFTCRGKPIHHFLGVSTFSQYTVVDENAVAKIDAASPMEKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFG 200          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: FADH_PICPA (S-(hydroxymethyl)glutathione dehydrogenase OS=Pichia pastoris GN=FLD1 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.315e-53
Identity = 98/201 (48.76%), Postives = 134/201 (66.67%), Query Frame = 2
Query:   29 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 631
            ST G I+ CKAAVAWEAGK L I+++EV PP+  EVR+K+++T +C TD Y          FP +FGHE AGVVES+GEGV  ++VGD V+ ++T EC +C+ C S  +N+C  +R    +G +L DG SRF   G+ + H++G S+FS+YTVV    V K+   AP DK C+L CGV+TG GA +N AK  +G  + VFG
Sbjct:    2 STEGQIIKCKAAVAWEAGKDLSIEEIEVLPPRAHEVRVKVEFTGVCHTDAYTLSGADAEGSFPVVFGHEGAGVVESVGEGVESVKVGDSVVLLYTPECRECKFCLSGKTNLCGKIRATQGKG-LLPDGTSRFRCKGKDLFHYMGCSSFSQYTVVADISVVKVQDEAPKDKTCLLGCGVTTGYGAAINTAKISKGDKIGVFG 201          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: ADHX_MYXGL (Alcohol dehydrogenase class-3 OS=Myxine glutinosa PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 9.554e-53
Identity = 97/202 (48.02%), Postives = 136/202 (67.33%), Query Frame = 2
Query:   26 SSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 631
            S   G ++ CKAAVAWEA KPL ++++EVAPPK  EVR+K+  T++C TD Y          FP + GHE AG+VES+GEGV+  + GD V+P++  +CG+C+ C +  +N+C  +R+   +G M+ DG SR +  G+ + HF+G STFSEY VV    + ++ P AP D+VC+L CGVSTG GA LN AK E GS+ A+FG
Sbjct:    1 SKMDGQVIHCKAAVAWEAKKPLSLEEIEVAPPKAHEVRMKVLATAVCHTDAYTLSGVDPEGSFPVVLGHEGAGIVESVGEGVTKFKPGDSVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-MMPDGTSRLTCRGKSLYHFMGASTFSEYAVVADISLCRVAPEAPPDRVCLLGCGVSTGYGAPLNTAKVEPGSTCAIFG 201          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: ADH1_GADCA (Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.630e-52
Identity = 103/201 (51.24%), Postives = 135/201 (67.16%), Query Frame = 2
Query:   29 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 631
            +T G ++ CKAAVAWEA KPL+I+++EV  P   E+RIKI  T +C TDLY          FP + GHE AG+VES+G GV++ + G+ V+P+F  +CG+CR C+S  +N C     N    VM +  ++RF+  G  V  FLGTSTFS+YTVV+   VAKI+P APLD VC+L CGVSTG GA +N AK E GS+ AVFG
Sbjct:    1 ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVM-SPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFG 200          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: ADH1_MOUSE (Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE=2 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 3.631e-52
Identity = 103/201 (51.24%), Postives = 138/201 (68.66%), Query Frame = 2
Query:   29 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 631
            STAG ++ CKAAV WE  KP  I+D+EVAPPK  EVRIK+  T +CR+D +       TPL P + GHE AG+VES+GEGV+ ++ GD V+P+F+ +CG+CR C+   SN C    +   RG  L +G SRFS  G+ +++F+ TSTFS+YTVV    VAKI+  +PLDKVC++ CG STG G+ + VAK   GS+ AVFG
Sbjct:    2 STAGKVIKCKAAVLWELHKPFTIEDIEVAPPKAHEVRIKMVATGVCRSDDHVVSGTLVTPL-PAVLGHEGAGIVESVGEGVTCVKPGDKVIPLFSPQCGECRICKHPESNFCSRSDLLMPRGT-LREGTSRFSCKGKQIHNFISTSTFSQYTVVDDIAVAKIDGASPLDKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFG 200          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: ADH1S_HORSE (Alcohol dehydrogenase S chain OS=Equus caballus PE=1 SV=3)

HSP 1 Score: 204.527 bits (519), Expect = 3.631e-52
Identity = 105/201 (52.24%), Postives = 138/201 (68.66%), Query Frame = 2
Query:   29 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 631
            STAG ++ CKAAV WE  KP  I++VEVAPPK  EVRIK+    +CR+D +        PL P I GHEAAG+VES+GEGV+ +  GD V+P+F  +CG C  C+    N+C L  ++  RG M  DG SRF+  G+P++HFLGTSTFS+YTVV    VAKI+  +PL+KVC++ CG STG G+ + VAK  +GS+ AVFG
Sbjct:    2 STAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTLVAPL-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLC-LKNLSMPRGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGSAVKVAKVTQGSTCAVFG 199          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: ADH1A_HUMAN (Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 6.193e-52
Identity = 104/201 (51.74%), Postives = 138/201 (68.66%), Query Frame = 2
Query:   29 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 631
            STAG ++ CKAAV WE  KP  I++VEVAPPK  EVRIK+    +C TD +       TPL P I GHEAAG+VES+GEGV+ ++ GD V+P+   +CG CR C++  SN C    +++ +G  L DG SRF+   +P++HFLG STFS+YTVV    VAKI+  +PL+KVC++ CG STG G+ +NVAK   GS+ AVFG
Sbjct:    2 STAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAVGICGTDDHVVSGTMVTPL-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYCLKNDVSNPQGT-LQDGTSRFTCRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFG 200          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: FRMA_SYNY3 (S-(hydroxymethyl)glutathione dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=frmA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.088e-52
Identity = 99/192 (51.56%), Postives = 133/192 (69.27%), Query Frame = 2
Query:   56 KAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 631
            +AAVA+E GKPL I +++VAPP+  EV +KI +T +C TD +         LFP + GHE AG+V  +GEGV+ +++GDHV+P++T ECG C  CRS  +N+C  +R    +GVM  DG SRFS NG+ + H++G STFSEYTVV    +AKINP A  + VC+L CGV+TG+GA  N AK + G SVAVFG
Sbjct:    4 RAAVAFEVGKPLQIVEIDVAPPQQGEVLVKITHTGVCHTDAFTLSGDDPEGLFPVVLGHEGAGIVVEVGEGVTSVQLGDHVIPLYTAECGKCLFCRSGKTNLCVAVRATQGKGVM-PDGTSRFSYNGQSLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFG 194          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.056e-51
Identity = 103/202 (50.99%), Postives = 132/202 (65.35%), Query Frame = 2
Query:   26 SSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 631
            S TAG I+ CKAAVAW+   PL I++V+V PP+  EVRIKI  + +C TD Y    K    LFP I GHE AG+VES+G  V+ ++VGD V+ ++T EC  C+ C+S  +N+C  +R    +G+M  DG SRFS NG  + HF+G STFSEYTVV    V  I  LAPLD VC+L CG++TG GA    A  + G SVAVFG
Sbjct:    4 SPTAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIALYTPECKTCKFCKSGKTNLCGRIRTTQGKGLM-PDGTSRFSCNGNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSVCLLGCGITTGYGAATITADIKEGDSVAVFG 204          
The following BLAST results are available for this feature:
BLAST of FC869224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
ADH1A_PONAB5.601e-5352.24Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A ... [more]
ADH1A_MACMU5.601e-5352.24Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1... [more]
FADH_PICPA7.315e-5348.76S-(hydroxymethyl)glutathione dehydrogenase OS=Pich... [more]
ADHX_MYXGL9.554e-5348.02Alcohol dehydrogenase class-3 OS=Myxine glutinosa ... [more]
ADH1_GADCA1.630e-5251.24Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV... [more]
ADH1_MOUSE3.631e-5251.24Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE... [more]
ADH1S_HORSE3.631e-5252.24Alcohol dehydrogenase S chain OS=Equus caballus PE... [more]
ADH1A_HUMAN6.193e-5251.74Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A ... [more]
FRMA_SYNY38.088e-5251.56S-(hydroxymethyl)glutathione dehydrogenase OS=Syne... [more]
FADH2_SCHPO1.056e-5150.99Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]

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Properties
Property NameValue
Genbank descriptionC31009H03EF AbioticL1 Citrus clementina cDNA clone C31009H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869224 ID=FC869224; Name=FC869224; organism=Citrus clementina; type=EST; length=633bp
ATTCTCATTGGGAACCTCACCAATGTCGAGCACTGCTGGTCTTATTCTTA
CCTGCAAAGCGGCGGTTGCTTGGGAAGCAGGGAAGCCGCTGATCATTCAG
GATGTGGAGGTTGCTCCTCCAAAGACCATGGAAGTGAGGATCAAGATCAA
ATACACCTCTCTTTGCCGCACTGATCTCTATTTCTGGGAGTCCAAGGGTC
AGACACCCTTGTTTCCTCGCATATTTGGGCATGAAGCAGCAGGGGTTGTG
GAAAGTCTTGGGGAAGGTGTTTCAGACCTTGAAGTAGGGGATCATGTACT
CCCGGTATTTACAGGGGAGTGTGGGGATTGTAGACACTGCAGGTCCGATG
TAAGCAATATGTGTGACCTTTTGAGAATAAACTCAGTCAGGGGAGTCATG
CTTGCTGATGGACAATCTAGGTTTTCGATCAATGGGGAGCCTGTAAATCA
CTTCCTTGGAACATCCACCTTTAGCGAGTACACTGTCGTTCATTCAGGCT
GCGTTGCAAAGATCAATCCTCTGGCACCTTTGGATAAAGTCTGCATTCTC
AGTTGTGGCGTCTCAACAGGGCTAGGTGCAACTCTAAATGTGGCAAAACC
TGAAAGGGGTTCGTCAGTCGCTGTCTTTGGCCT
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