FC869224

Overview
NameFC869224
Unique NameFC869224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: FRMA_ECOHS (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=frmA PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.353e-51
Identity = 98/192 (51.04%), Postives = 133/192 (69.27%), Query Frame = 2
Query:   56 KAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 631
            +AAVA+  GKPL I +++VAPPK  EV IK+ +T +C TD +         +FP + GHE AGVV  +GEGV+ ++ GDHV+P++T ECG+C  CRS  +N+C  +R    +G+M  DG +RFS NG+P+ H++G STFSEYTVV    +AKINP A  + VC+L CGV+TG+GA  N AK + G SVAVFG
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFG 194          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: FRMA_ECO57 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O157:H7 GN=frmA PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.353e-51
Identity = 98/192 (51.04%), Postives = 133/192 (69.27%), Query Frame = 2
Query:   56 KAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 631
            +AAVA+  GKPL I +++VAPPK  EV IK+ +T +C TD +         +FP + GHE AGVV  +GEGV+ ++ GDHV+P++T ECG+C  CRS  +N+C  +R    +G+M  DG +RFS NG+P+ H++G STFSEYTVV    +AKINP A  + VC+L CGV+TG+GA  N AK + G SVAVFG
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFG 194          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: FRMA_ECO24 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.353e-51
Identity = 98/192 (51.04%), Postives = 133/192 (69.27%), Query Frame = 2
Query:   56 KAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 631
            +AAVA+  GKPL I +++VAPPK  EV IK+ +T +C TD +         +FP + GHE AGVV  +GEGV+ ++ GDHV+P++T ECG+C  CRS  +N+C  +R    +G+M  DG +RFS NG+P+ H++G STFSEYTVV    +AKINP A  + VC+L CGV+TG+GA  N AK + G SVAVFG
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFG 194          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: ADH6_PONAB (Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.353e-51
Identity = 98/201 (48.76%), Postives = 133/201 (66.17%), Query Frame = 2
Query:   29 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 631
            ST G ++ CKAA+ W+ G P  I++VEVAPPK  EVRIK+  T LC T++    SK    L+P I GHE AG+VES+GEGVS ++ GD V+ +F  +CG+C  C +   N C  ++       +++DG SRF+  G+ + HF  TSTF EYTV+    VAKI+ +APL+KVC++SCG STG GA +N AK   GS+ AVFG
Sbjct:    2 STTGQVIRCKAAILWKPGAPFSIEEVEVAPPKAKEVRIKVVATGLCGTEMKVLGSKHLDLLYPTILGHEGAGIVESIGEGVSTVKPGDKVITLFLPQCGECTSCLNSEGNFC--IQFKQSETQLMSDGTSRFTCKGKSIYHFGNTSTFCEYTVIKEISVAKIDAVAPLEKVCLISCGFSTGFGAAINTAKVTPGSTCAVFG 200          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: ADH4_HUMAN (Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE=1 SV=4)

HSP 1 Score: 201.445 bits (511), Expect = 3.073e-51
Identity = 104/205 (50.73%), Postives = 142/205 (69.27%), Query Frame = 2
Query:   32 TAGLILTCKAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSVRG-----VMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 631
            T G ++ CKAA+AWEAGKPL I++VEVAPPK  EVRI+I  TSLC TD    +SK +   FP I GHEAAG+VES+G GV++++ GD V+P++   C  C+ C S ++N+C   +I++++       ++ D  SRF+  G+PV HF GTSTFS+YTVV    +AKI+  A L++VC+L CG STG GA +N AK   GS+ AVFG
Sbjct:    3 TKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCG--KISNLKSPASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTGYGAAINNAKVTPGSTCAVFG 205          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: ADH6_HUMAN (Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE=2 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 4.014e-51
Identity = 97/200 (48.50%), Postives = 133/200 (66.50%), Query Frame = 2
Query:   32 TAGLILTCKAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 631
            T G ++ CKAA+ W+ G P  I++VEVAPPK  EVRIK+  T LC T++    SK    L+P I GHE AG+VES+GEGVS ++ GD V+ +F  +CG+C  C +   N C  ++    +  +++DG SRF+  G+ + HF  TSTF EYTV+    VAKI+ +APL+KVC++SCG STG GA +N AK   GS+ AVFG
Sbjct:    3 TTGQVIRCKAAILWKPGAPFSIEEVEVAPPKAKEVRIKVVATGLCGTEMKVLGSKHLDLLYPTILGHEGAGIVESIGEGVSTVKPGDKVITLFLPQCGECTSCLNSEGNFC--IQFKQSKTQLMSDGTSRFTCKGKSIYHFGNTSTFCEYTVIKEISVAKIDAVAPLEKVCLISCGFSTGFGAAINTAKVTPGSTCAVFG 200          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: ADH1_GEOKN (Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=ADH1 PE=2 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 4.014e-51
Identity = 98/195 (50.26%), Postives = 132/195 (67.69%), Query Frame = 2
Query:   29 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGS 613
            STAG ++ C+AAV WE  KP  I++VEV PPK  EVRIKI  T +CR+D +       TPL P I GHEA G+VES+GEGV+ ++ GD V+P+F  +CG CR C+   SN+C    +   +G ++ DG SRF+  G+P++HFLG +TFSEYTVV    V KI+  +PL+KVC++ CG STG G+ + V K  RGS
Sbjct:    2 STAGKVIKCRAAVLWEKNKPFSIEEVEVVPPKAYEVRIKIVATGICRSDDHVVNGSIITPL-PAILGHEAGGIVESIGEGVTTVKPGDKVIPLFVPQCGKCRACKHPESNLCTHGDLGRAQGTLM-DGTSRFTCKGKPIHHFLGVTTFSEYTVVSEISVTKIDAASPLEKVCLIGCGFSTGYGSAVKVGKVARGS 194          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: FRMA_PASPI (S-(hydroxymethyl)glutathione dehydrogenase OS=Pasteurella piscicida GN=frmA PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.242e-51
Identity = 98/192 (51.04%), Postives = 131/192 (68.23%), Query Frame = 2
Query:   56 KAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 631
            +AAVA+  G PL I +++VAPPK  EV +KI +T +C TD Y         LFP + GHE AGVV  +GEGV+ ++ GDHV+P++T ECG+C  C S  +N+C  +R    +GVM  D  SRF +NG+P+ H++G STFSEYTVV    +AKINP A  ++VC+L CGV+TG+GA  N AK + G SVAVFG
Sbjct:    4 RAAVAFGPGLPLEIVEIDVAPPKKGEVLVKISHTGVCHTDAYTLSGDDPEGLFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECDFCTSGKTNLCVAVRETQGKGVM-PDATSRFFVNGQPLYHYMGCSTFSEYTVVAEVSLAKINPQANAEQVCLLGCGVTTGIGAVHNTAKVQEGDSVAVFG 194          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 6.847e-51
Identity = 102/200 (51.00%), Postives = 135/200 (67.50%), Query Frame = 2
Query:   32 TAGLILTCKAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 631
            TAG ++ CKAAV WE  +P  I+++EVAPPKT EVRIKI  T +CRTD +  +       FP I GHEA G+VES+GEGV+ ++ GD V+P+F  +C +C  CR+   N+C    I   RGV LADG +RF+  G+PV+HF+ TSTF+EYTVV    VAKI+  AP +KVC++ CG STG GA +   K + GS+  VFG
Sbjct:    3 TAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGT-MVSKFPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDITG-RGV-LADGTTRFTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFG 199          
BLAST of FC869224 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.168e-50
Identity = 98/203 (48.28%), Postives = 134/203 (66.01%), Query Frame = 2
Query:   26 SSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPKTMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESLGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINSVRGVMLADGQSRF-SINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 631
            ++T G  + C AAVA++A KPL ++++ V  PK  EVRIKI+YT++C TD Y         LFP + GHE AG+VES+G+ V  ++ GDHV+ ++T ECG C+ C S  +N+C  +R    +GVM  DG +RF +  GE + HF+G STFSEYTVV    V  I+P APLD  C+L CGV+TG GA L  A  ++G +VAVFG
Sbjct:    3 AATVGKPIKCIAAVAYDAKKPLSVEEITVDAPKAHEVRIKIEYTAVCHTDAYTLSGSDPEGLFPCVLGHEGAGIVESVGDDVITVKPGDHVIALYTAECGKCKFCTSGKTNLCGAVRATQGKGVM-PDGTTRFHNAKGEDIYHFMGCSTFSEYTVVADVSVVAIDPKAPLDAACLLGCGVTTGFGAALKTANVQKGDTVAVFG 204          
The following BLAST results are available for this feature:
BLAST of FC869224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
FRMA_ECOHS2.353e-5151.04S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO572.353e-5151.04S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO242.353e-5151.04S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADH6_PONAB2.353e-5148.76Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE... [more]
ADH4_HUMAN3.073e-5150.73Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE... [more]
ADH6_HUMAN4.014e-5148.50Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE... [more]
ADH1_GEOKN4.014e-5150.26Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=AD... [more]
FRMA_PASPI5.242e-5151.04S-(hydroxymethyl)glutathione dehydrogenase OS=Past... [more]
ADH7_HUMAN6.847e-5151.00Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]
FADH_YEAST1.168e-5048.28S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31009H03EF AbioticL1 Citrus clementina cDNA clone C31009H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869224 ID=FC869224; Name=FC869224; organism=Citrus clementina; type=EST; length=633bp
ATTCTCATTGGGAACCTCACCAATGTCGAGCACTGCTGGTCTTATTCTTA
CCTGCAAAGCGGCGGTTGCTTGGGAAGCAGGGAAGCCGCTGATCATTCAG
GATGTGGAGGTTGCTCCTCCAAAGACCATGGAAGTGAGGATCAAGATCAA
ATACACCTCTCTTTGCCGCACTGATCTCTATTTCTGGGAGTCCAAGGGTC
AGACACCCTTGTTTCCTCGCATATTTGGGCATGAAGCAGCAGGGGTTGTG
GAAAGTCTTGGGGAAGGTGTTTCAGACCTTGAAGTAGGGGATCATGTACT
CCCGGTATTTACAGGGGAGTGTGGGGATTGTAGACACTGCAGGTCCGATG
TAAGCAATATGTGTGACCTTTTGAGAATAAACTCAGTCAGGGGAGTCATG
CTTGCTGATGGACAATCTAGGTTTTCGATCAATGGGGAGCCTGTAAATCA
CTTCCTTGGAACATCCACCTTTAGCGAGTACACTGTCGTTCATTCAGGCT
GCGTTGCAAAGATCAATCCTCTGGCACCTTTGGATAAAGTCTGCATTCTC
AGTTGTGGCGTCTCAACAGGGCTAGGTGCAACTCTAAATGTGGCAAAACC
TGAAAGGGGTTCGTCAGTCGCTGTCTTTGGCCT
back to top