FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9484 contig Ccv1_Contig9484:1..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SHIFL (Porphobilinogen deaminase OS=Shigella flexneri GN=hemC PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 70/132 (53.03%), Postives = 88/132 (66.67%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ECOSE (Porphobilinogen deaminase OS=Escherichia coli (strain SE11) GN=hemC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 70/132 (53.03%), Postives = 88/132 (66.67%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ECOLU (Porphobilinogen deaminase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=hemC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 70/132 (53.03%), Postives = 88/132 (66.67%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ECOLI (Porphobilinogen deaminase OS=Escherichia coli (strain K12) GN=hemC PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 70/132 (53.03%), Postives = 88/132 (66.67%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ECOL6 (Porphobilinogen deaminase OS=Escherichia coli O6 GN=hemC PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 70/132 (53.03%), Postives = 88/132 (66.67%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNTYDSLDALPAGSIVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ECODH (Porphobilinogen deaminase OS=Escherichia coli (strain K12 / DH10B) GN=hemC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 70/132 (53.03%), Postives = 88/132 (66.67%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ECOBW (Porphobilinogen deaminase OS=Escherichia coli (strain K12 / BW2952) GN=hemC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 70/132 (53.03%), Postives = 88/132 (66.67%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ECO8A (Porphobilinogen deaminase OS=Escherichia coli O8 (strain IAI1) GN=hemC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 70/132 (53.03%), Postives = 88/132 (66.67%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ECO7I (Porphobilinogen deaminase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=hemC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 70/132 (53.03%), Postives = 88/132 (66.67%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDNLDALPAGSIVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ECO57 (Porphobilinogen deaminase OS=Escherichia coli O157:H7 GN=hemC PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 70/132 (53.03%), Postives = 88/132 (66.67%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRR 132
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_SHIFL3.510e-2953.03Porphobilinogen deaminase OS=Shigella flexneri GN=... [more]
HEM3_ECOSE3.510e-2953.03Porphobilinogen deaminase OS=Escherichia coli (str... [more]
HEM3_ECOLU3.510e-2953.03Porphobilinogen deaminase OS=Escherichia coli O17:... [more]
HEM3_ECOLI3.510e-2953.03Porphobilinogen deaminase OS=Escherichia coli (str... [more]
HEM3_ECOL63.510e-2953.03Porphobilinogen deaminase OS=Escherichia coli O6 G... [more]
HEM3_ECODH3.510e-2953.03Porphobilinogen deaminase OS=Escherichia coli (str... [more]
HEM3_ECOBW3.510e-2953.03Porphobilinogen deaminase OS=Escherichia coli (str... [more]
HEM3_ECO8A3.510e-2953.03Porphobilinogen deaminase OS=Escherichia coli O8 (... [more]
HEM3_ECO7I3.510e-2953.03Porphobilinogen deaminase OS=Escherichia coli O7:K... [more]
HEM3_ECO573.510e-2953.03Porphobilinogen deaminase OS=Escherichia coli O157... [more]

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Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
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