FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_MARAV (Porphobilinogen deaminase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=hemC PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.354e-25
Identity = 64/131 (48.85%), Postives = 83/131 (63.36%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RI TR S LAL QA   + +L  LH  +     ++++ IKT GDKIL  PLA IGGKGLF KE++EA+++ + D+AVHSMKDVP   PE   L    +RED  DAF+          P G++VGTASLRR
Sbjct:    6 LRIATRSSALALWQAEFIKAELERLHDNVD----VELIKIKTQGDKILDVPLAKIGGKGLFVKELEEAMLDGRADLAVHSMKDVPMEFPEGLGLVAICEREDPTDAFVSNQYEHIDQLPEGAVVGTASLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_VIBVY (Porphobilinogen deaminase OS=Vibrio vulnificus (strain YJ016) GN=hemC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.075e-25
Identity = 63/131 (48.09%), Postives = 81/131 (61.83%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR SPLAL QA+  ++ L   HP L     +++V + T GD IL  PLA +GGKGLF KE++ A++  + D+AVHSMKDVP   PE   L    +RED RDAF+          P G++VGT SLRR
Sbjct:    7 IRIATRKSPLALWQAYYVKDALQKAHPGLE----VELVTMVTKGDVILDTPLAKVGGKGLFVKELEVAMLEGRADLAVHSMKDVPVDFPEGLGLVTICEREDPRDAFVSNTYHHVDELPQGAVVGTCSLRR 133          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_VIBVU (Porphobilinogen deaminase OS=Vibrio vulnificus GN=hemC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.075e-25
Identity = 63/131 (48.09%), Postives = 81/131 (61.83%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR SPLAL QA+  ++ L   HP L     +++V + T GD IL  PLA +GGKGLF KE++ A++  + D+AVHSMKDVP   PE   L    +RED RDAF+          P G++VGT SLRR
Sbjct:    7 IRIATRKSPLALWQAYYVKDALQKAHPGLE----VELVTMVTKGDVILDTPLAKVGGKGLFVKELEVAMLEGRADLAVHSMKDVPVDFPEGLGLVTICEREDPRDAFVSNTYHHVDELPQGAVVGTCSLRR 133          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_KLEP7 (Porphobilinogen deaminase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hemC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.075e-25
Identity = 63/132 (47.73%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +++I TR SPLAL QA   + +L   HP L     +++V + T GD IL  PLA +GGKGLF KE++ A++  + DIAVHSMKDVP   PE   L    +R+D RDAF+          PAGS+VGT+SLRR
Sbjct:    5 VLKIATRQSPLALWQAQYVKARLEQAHPGLK----VELVPMVTRGDVILDTPLAKVGGKGLFVKELELAMLEGRADIAVHSMKDVPVEFPEGLGLVTICERDDPRDAFVSNRYASIDELPAGSVVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_DESHY (Porphobilinogen deaminase OS=Desulfitobacterium hafniense (strain Y51) GN=hemC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.075e-25
Identity = 64/131 (48.85%), Postives = 82/131 (62.60%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++IGTR S LAL QA   + KL   +PE        +V +KT GDKIL  PLA IG KGLFTKE++  L+N +ID AVHS+KD+PT LP    +    +RE+ RD F+          PAGSI+GT+SLRR
Sbjct:    4 VKIGTRDSQLALWQAEWVKRKLEEYYPERE----FVLVPMKTKGDKILDVPLAKIGDKGLFTKELEVGLLNGEIDCAVHSLKDLPTVLPPGLEIAAFCEREEPRDVFLSKDGTPLGSLPAGSIIGTSSLRR 130          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_DESHD (Porphobilinogen deaminase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=hemC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.075e-25
Identity = 64/131 (48.85%), Postives = 82/131 (62.60%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++IGTR S LAL QA   + KL   +PE        +V +KT GDKIL  PLA IG KGLFTKE++  L+N +ID AVHS+KD+PT LP    +    +RE+ RD F+          PAGSI+GT+SLRR
Sbjct:    4 VKIGTRDSQLALWQAEWVKRKLEEYYPERE----FVLVPMKTKGDKILDVPLAKIGDKGLFTKELEVGLLNGEIDCAVHSLKDLPTVLPPGLEIAAFCEREEPRDVFLSKDGTPLGSLPAGSIIGTSSLRR 130          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_BACP2 (Porphobilinogen deaminase OS=Bacillus pumilus (strain SAFR-032) GN=hemC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.075e-25
Identity = 64/132 (48.48%), Postives = 84/132 (63.64%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS 728
            I++G+R S LA+ Q      KL  L+P  + E    I  I T GD+IL   L+ +GGKGLF KEI++A++N  ID+AVHSMKD+P  LPE  ++ C  +REDVRDA I          P G+IVGT+SLRRS
Sbjct:    4 IKVGSRRSKLAITQTKWVIQKLSELNPSYSFE----IKEIVTKGDQILDVTLSKVGGKGLFVKEIEQAMLNHDIDMAVHSMKDMPAALPEGLVIGCIPEREDVRDALISKDHLHLHELPKGAIVGTSSLRRS 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_THISH (Porphobilinogen deaminase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=hemC PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.016e-25
Identity = 65/141 (46.10%), Postives = 83/141 (58.87%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLKYSIDIHH 755
            +RI TR SPLA+ QA      + A HP +     +++V + T GD+IL  PLA +GGKGLF KE++  L+  + DIAVHSMKDVP  LPE   LP  L RED RDAF+          P  + VGT+SLRR  +   D  H
Sbjct:    6 LRIATRKSPLAVWQAEHVAALVKARHPGVR----VELVGMTTQGDRILDTPLAKVGGKGLFVKELETGLLEGRADIAVHSMKDVPMELPEGLCLPVILDREDPRDAFVSNTFKSLDELPRDARVGTSSLRRQCQLRHDHPH 142          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PELPD (Porphobilinogen deaminase OS=Pelobacter propionicus (strain DSM 2379) GN=hemC PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.016e-25
Identity = 65/131 (49.62%), Postives = 85/131 (64.89%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RIGTR S LAL QA+  +++L   +P +     + +  IKT GD+IL  PLA +GGKGLF KEI+EA++  +IDIAVHSMKDVPT  PE   L C  +RED RDA +          P G+ VGT++LRR
Sbjct:    6 LRIGTRASQLALWQANWVKSELEKRYPAME----VTLTKIKTMGDRILDVPLAQVGGKGLFVKEIEEAMLRGEIDIAVHSMKDVPTEFPEGLGLYCITEREDPRDA-VVSRAARFSHLPPGARVGTSALRR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_KLEP3 (Porphobilinogen deaminase OS=Klebsiella pneumoniae (strain 342) GN=hemC PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.016e-25
Identity = 63/132 (47.73%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +++I TR SPLAL QA   + +L   HP L     +++V + T GD IL  PLA +GGKGLF KE++ A++  + DIAVHSMKDVP   PE   L    +R+D RDAF+          PAGS+VGT+SLRR
Sbjct:    5 VLKIATRQSPLALWQAQYVKARLEQAHPGLN----VELVPMVTRGDVILDTPLAKVGGKGLFVKELELAMLEGRADIAVHSMKDVPVEFPEGLGLVTICERDDPRDAFVSNHYASIDELPAGSVVGTSSLRR 132          
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_MARAV2.354e-2548.85Porphobilinogen deaminase OS=Marinobacter aquaeole... [more]
HEM3_VIBVY3.075e-2548.09Porphobilinogen deaminase OS=Vibrio vulnificus (st... [more]
HEM3_VIBVU3.075e-2548.09Porphobilinogen deaminase OS=Vibrio vulnificus GN=... [more]
HEM3_KLEP73.075e-2547.73Porphobilinogen deaminase OS=Klebsiella pneumoniae... [more]
HEM3_DESHY3.075e-2548.85Porphobilinogen deaminase OS=Desulfitobacterium ha... [more]
HEM3_DESHD3.075e-2548.85Porphobilinogen deaminase OS=Desulfitobacterium ha... [more]
HEM3_BACP23.075e-2548.48Porphobilinogen deaminase OS=Bacillus pumilus (str... [more]
HEM3_THISH4.016e-2546.10Porphobilinogen deaminase OS=Thioalkalivibrio sp. ... [more]
HEM3_PELPD4.016e-2549.62Porphobilinogen deaminase OS=Pelobacter propionicu... [more]
HEM3_KLEP34.016e-2547.73Porphobilinogen deaminase OS=Klebsiella pneumoniae... [more]

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Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
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